Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22673433 .. 22674069

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGACACCGTCGCCCAACGCCACTTCGCTGACGGCTGGGAAAAGAAGAAGCAAGTTGAAGTTTTGCCCTTGCCAAGAAGTAACTACACATTTCGGCTTGCTGCACGGTCATTTGTGAGCCTGGAGGACTCGGTTGAGATCGCCAAGCTAGGTGATCCGTTCGCAGTTTTGGCCTCGGGAATCATATCGATCCCTCGGGATTTCCCGGGGACTCCGTTTCACAAAGCGATCAAGGCGTCAAACTTCATCAGGGAGGAGCTGACGAAGATCATCAAGCAGAGGAAGATAGACTTGGCGGAGGGCAAAGCGTCGCCGACGCAAGACATATTGTGTCACATGTTGATATTGTGCGACGAGCACAGAAGTCACTTGAAGGAACACGATATCGCCGATAAGATTTTGGGGCAGCTGATCGGTGGCCATGACACCGCCAGCGCTACCAGCAATTTTGTTGTCAAGTATCTTGCCGACCTTCCTCACGAAAATTTTTCCAAAGTTCCGCGCTCATTAGTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

173

Amino Acids

19.21

Weight (kDa)

7.84

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	68 - 159	5.1e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	502
AciI	CCGC	3 cut(s)	296, 429, 500
AclWI	GGATC	2 cut(s)	149, 184
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	1 cut(s)	484
AcyI	GRCGYC	1 cut(s)	236
AfeI	AGCGCT	1 cut(s)	436
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	2 cut(s)	59, 373
AjnI	CCWGG	1 cut(s)	120
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	4 cut(s)	148, 259, 409, 516
AluI	AGCT	4 cut(s)	148, 259, 409, 516
Alw21I	GWGCWC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	149, 184
Ama87I	CYCGRG	3 cut(s)	175, 195, 205
Aor51HI	AGCGCT	1 cut(s)	436
AoxI	GGCC	2 cut(s)	171, 418
ApeKI	GCWGC	2 cut(s)	101, 406
ApoI	RAATTY	1 cut(s)	484
AspLEI	GCGC	2 cut(s)	437, 504
AsuC2I	CCSGG	2 cut(s)	206, 207
AsuHPI	GGTGA	1 cut(s)	164
AvaI	CYCGRG	3 cut(s)	175, 195, 205
BalI	TGGCCA	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	88, 418
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	122
BcnI	CCSGG	2 cut(s)	206, 207
BfaI	CTAG	1 cut(s)	149
BfoI	RGCGCY	1 cut(s)	438
BisI	GCNGC	2 cut(s)	102, 407
BlsI	GCNGC	2 cut(s)	103, 408
Bme1390I	CCNGG	3 cut(s)	122, 206, 207
BmeT110I	CYCGRG	3 cut(s)	175, 195, 205
BmrFI	CCNGG	3 cut(s)	122, 206, 207
BpmI	CTGGAG	1 cut(s)	143
BpuMI	CCSGG	2 cut(s)	206, 207
Bsa29I	ATCGAT	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	236
BsaJI	CCNNGG	4 cut(s)	174, 194, 205, 206
BseBI	CCWGG	1 cut(s)	122
BseCI	ATCGAT	1 cut(s)	188
BseDI	CCNNGG	4 cut(s)	174, 194, 205, 206
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	88, 418
BseYI	CCCAGC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	502
BshFI	GGCC	2 cut(s)	173, 420
BshVI	ATCGAT	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	3 cut(s)	175, 195, 205
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	173, 420
BsoBI	CYCGRG	3 cut(s)	175, 195, 205
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	6 cut(s)	138, 154, 189, 228, 267, 411
BspACI	CCGC	3 cut(s)	296, 429, 500
BspANI	GGCC	2 cut(s)	173, 420
BspDI	ATCGAT	1 cut(s)	188
BspFNI	CGCG	1 cut(s)	502
BspPI	GGATC	2 cut(s)	149, 184
BssECI	CCNNGG	4 cut(s)	174, 194, 205, 206
BssMI	GATC	6 cut(s)	138, 154, 189, 228, 267, 411
BssNI	GRCGYC	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	10, 108
BstACI	GRCGYC	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	99, 433
BstFNI	CGCG	1 cut(s)	502
BstH2I	RGCGCY	1 cut(s)	438
BstHHI	GCGC	2 cut(s)	437, 504
BstKTI	GATC	6 cut(s)	141, 157, 192, 231, 270, 414
BstMBI	GATC	6 cut(s)	138, 154, 189, 228, 267, 411
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 233, 441
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	3 cut(s)	120, 204, 205
BstUI	CGCG	1 cut(s)	502
BstV1I	GCAGC	2 cut(s)	88, 418
Bsu15I	ATCGAT	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	173, 420
BsuTUI	ATCGAT	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	99, 433
CfoI	GCGC	2 cut(s)	437, 504
Cfr9I	CCCGGG	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	188
CseI	GACGC	3 cut(s)	225, 297, 325
CviAII	CATG	2 cut(s)	337, 422
CviJI	RGCY	9 cut(s)	36, 97, 120, 148, 173, 259, 409, 420, 516
CviKI_1	RGCY	9 cut(s)	36, 97, 120, 148, 173, 259, 409, 420, 516
DpnI	GATC	6 cut(s)	140, 156, 191, 230, 269, 413
DpnII	GATC	6 cut(s)	138, 154, 189, 228, 267, 411
EaeI	YGGCCR	1 cut(s)	418
EciI	GGCGGA	1 cut(s)	311
Eco32I	GATATC	1 cut(s)	385
Eco47III	AGCGCT	1 cut(s)	436
Eco88I	CYCGRG	3 cut(s)	175, 195, 205
EcoRII	CCWGG	1 cut(s)	120
EcoRV	GATATC	1 cut(s)	385
FaeI	CATG	2 cut(s)	340, 425
FaiI	YATR	4 cut(s)	185, 326, 338, 423
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	2 cut(s)	336, 421
Fnu4HI	GCNGC	2 cut(s)	102, 407
Fsp4HI	GCNGC	2 cut(s)	102, 407
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	2 cut(s)	436, 503
GluI	GCNGC	2 cut(s)	102, 407
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	438
HaeIII	GGCC	2 cut(s)	173, 420
HapII	CCGG	1 cut(s)	206
HgaI	GACGC	3 cut(s)	225, 297, 325
HhaI	GCGC	2 cut(s)	437, 504
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	2 cut(s)	340, 425
Hin6I	GCGC	2 cut(s)	435, 502
HinP1I	GCGC	2 cut(s)	435, 502
HinfI	GANTC	3 cut(s)	128, 180, 211
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	164
Hpy188III	TCNNGA	3 cut(s)	177, 197, 479
Hpy99I	CGWCG	4 cut(s)	14, 313, 319, 356
HpyAV	CCTTC	2 cut(s)	367, 482
HpyCH4III	ACNGT	2 cut(s)	10, 108
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 233, 441
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	2 cut(s)	340, 425
HspAI	GCGC	2 cut(s)	435, 502
Kzo9I	GATC	6 cut(s)	138, 154, 189, 228, 267, 411
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	7 cut(s)	22, 107, 134, 219, 235, 445, 454
Lsp1109I	GCAGC	2 cut(s)	88, 418
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	3 cut(s)	80, 332, 365
MalI	GATC	6 cut(s)	140, 156, 191, 230, 269, 413
MboI	GATC	6 cut(s)	138, 154, 189, 228, 267, 411
MboII	GAAGA	3 cut(s)	58, 277, 295
MhlI	GDGCHC	1 cut(s)	360
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	2 cut(s)	445, 484
MluNI	TGGCCA	1 cut(s)	420
MlyI	GAGTC	2 cut(s)	122, 205
MnlI	CCTC	7 cut(s)	118, 184, 204, 247, 273, 292, 486
Mox20I	TGGCCA	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	3 cut(s)	122, 206, 207
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	502
MwoI	GCNNNNNNNGC	3 cut(s)	170, 233, 441
NciI	CCSGG	2 cut(s)	206, 207
NdeII	GATC	6 cut(s)	138, 154, 189, 228, 267, 411
NlaIII	CATG	2 cut(s)	340, 425
NmuCI	GTSAC	2 cut(s)	332, 365
NspI	RCATGY	1 cut(s)	340
PciI	ACATGT	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	180
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	103, 408
PleI	GAGTC	2 cut(s)	122, 205
PpsI	GAGTC	2 cut(s)	122, 205
PscI	ACATGT	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	120
PsyI	GACNNNGTC	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	409
SatI	GCNGC	2 cut(s)	102, 407
Sau3AI	GATC	6 cut(s)	138, 154, 189, 228, 267, 411
SchI	GAGTC	2 cut(s)	122, 205
ScrFI	CCNGG	3 cut(s)	122, 206, 207
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	6 cut(s)	150, 154, 261, 411, 474, 518
SmaI	CCCGGG	1 cut(s)	207
Sse9I	AATT	2 cut(s)	445, 484
SsiI	CCGC	3 cut(s)	296, 429, 500
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	3 cut(s)	120, 204, 205
TaaI	ACNGT	2 cut(s)	10, 108
TaqI	TCGA	1 cut(s)	188
TasI	AATT	2 cut(s)	445, 484
TfiI	GAWTC	1 cut(s)	180
TseFI	GTSAC	2 cut(s)	332, 365
TseI	GCWGC	2 cut(s)	101, 406
Tsp45I	GTSAC	2 cut(s)	332, 365
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	2 cut(s)	147, 204
TspMI	CCCGGG	1 cut(s)	205
Tth111I	GACNNNGTC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	484
XceI	RCATGY	1 cut(s)	340
XmaI	CCCGGG	1 cut(s)	205
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.