Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

23168057 .. 23168395

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGACGCCATGGGAGGTAAAGGGGGCCTGATCTACATAGTCATCGATTCGTCGGATTCCAACCTGGCCAACCTAACTCCGGGCACGCTTTGCCATGCCGTTAACCAAATCGAGCCCCTTTGGATTATCTTCTTCACTGACATGACCATCAAGCTCAAATGCGAGCTCATTGTCAACAGCTTTAAGACTATCGACGACCATGGCTACAGTGTCCACGTCACCGGTGGCGGATACACCACCTGTGGACCATTCCTCCTTCCTTTCTCACCTCCCTGCGATCTCACTCCCTTTCTCTCTCGACAGTCAACGTGCATTGTCTTCCCTGACATAGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009814 GO:0009825 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016829 GO:0016835 GO:0016837 GO:0030570 GO:0031224 GO:0031225 GO:0031226 GO:0040007 GO:0042545 GO:0042547 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045229 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00040 ko02024 map00040 map02024

Pfam Domains

Protein Families

Pec_lyase_C

Protein Analysis

113

Amino Acids

12.14

Weight (kDa)

4.68

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	6
AfiI	CCNNNNNNNGG	2 cut(s)	79, 329
AgeI	ACCGGT	1 cut(s)	221
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	3 cut(s)	154, 166, 180
AluI	AGCT	3 cut(s)	154, 166, 180
Alw21I	GWGCWC	1 cut(s)	168
AoxI	GGCC	2 cut(s)	25, 66
AsiGI	ACCGGT	1 cut(s)	221
AspS9I	GGNCC	2 cut(s)	25, 245
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	2 cut(s)	211, 258
AvaII	GGWCC	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	68
BanII	GRGCYC	2 cut(s)	117, 168
BbsI	GAAGAC	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	168
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	65
BciVI	GTATCC	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	205
BfuI	GTATCC	1 cut(s)	224
Bme1390I	CCNGG	2 cut(s)	65, 81
Bme18I	GGWCC	1 cut(s)	245
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	25, 245
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	65, 81
BpiI	GAAGAC	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	81
Bsa29I	ATCGAT	1 cut(s)	45
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	9, 199
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 329
Bse118I	RCCGGY	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	65
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	9, 199
BseLI	CCNNNNNNNGG	2 cut(s)	79, 329
BseSI	GKGCMC	1 cut(s)	86
BshFI	GGCC	2 cut(s)	27, 68
BshTI	ACCGGT	1 cut(s)	221
BshVI	ATCGAT	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	80, 222
BslI	CCNNNNNNNGG	2 cut(s)	79, 329
BsnI	GGCC	2 cut(s)	27, 68
Bsp1286I	GDGCHC	3 cut(s)	86, 117, 168
Bsp143I	GATC	2 cut(s)	30, 277
Bsp19I	CCATGG	2 cut(s)	9, 199
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	2 cut(s)	27, 68
BspDI	ATCGAT	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	2 cut(s)	9, 199
BssMI	GATC	2 cut(s)	30, 277
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	9, 199
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	209, 303
BstACI	GRCGYC	1 cut(s)	6
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	86, 164
BstDSI	CCRYGG	2 cut(s)	9, 199
BstENI	CCTNNNNNAGG	1 cut(s)	327
BstKTI	GATC	2 cut(s)	33, 280
BstMBI	GATC	2 cut(s)	30, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	63, 79
BstSFI	CTRYAG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	27, 68
BsuTUI	ATCGAT	1 cut(s)	45
BtgI	CCRYGG	2 cut(s)	9, 199
BtrI	CACGTC	1 cut(s)	217
BtsIMutI	CAGTG	2 cut(s)	135, 214
Cac8I	GCNNGC	2 cut(s)	86, 164
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	25, 245
ClaI	ATCGAT	1 cut(s)	45
CseI	GACGC	1 cut(s)	14
CspAI	ACCGGT	1 cut(s)	221
CviAII	CATG	4 cut(s)	10, 95, 142, 200
CviJI	RGCY	7 cut(s)	27, 68, 115, 154, 166, 180, 204
CviKI_1	RGCY	7 cut(s)	27, 68, 115, 154, 166, 180, 204
DpnI	GATC	2 cut(s)	32, 279
DpnII	GATC	2 cut(s)	30, 277
EaeI	YGGCCR	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	2 cut(s)	9, 199
Eco24I	GRGCYC	2 cut(s)	117, 168
Eco47I	GGWCC	1 cut(s)	245
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	63
EcoT14I	CCWWGG	2 cut(s)	9, 199
EcoT38I	GRGCYC	2 cut(s)	117, 168
ErhI	CCWWGG	2 cut(s)	9, 199
FaeI	CATG	4 cut(s)	13, 98, 145, 203
FaiI	YATR	6 cut(s)	11, 38, 96, 143, 201, 329
FatI	CATG	4 cut(s)	9, 94, 141, 199
FriOI	GRGCYC	2 cut(s)	117, 168
HaeIII	GGCC	2 cut(s)	27, 68
HapII	CCGG	2 cut(s)	80, 222
HgaI	GACGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	13, 98, 145, 203
HincII	GTYRAC	3 cut(s)	103, 175, 306
HindII	GTYRAC	3 cut(s)	103, 175, 306
HinfI	GANTC	2 cut(s)	47, 56
HpaI	GTTAAC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	80, 222
HphI	GGTGA	2 cut(s)	211, 258
Hpy166II	GTNNAC	5 cut(s)	103, 175, 214, 245, 306
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	297
Hpy8I	GTNNAC	5 cut(s)	103, 175, 214, 245, 306
Hpy99I	CGWCG	2 cut(s)	55, 197
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	209, 303
HpyCH4IV	ACGT	2 cut(s)	216, 308
HpyCH4V	TGCA	1 cut(s)	312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpySE526I	ACGT	2 cut(s)	216, 308
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	13, 98, 145, 203
KspAI	GTTAAC	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	30, 277
LpnPI	CCDG	7 cut(s)	41, 50, 77, 93, 235, 253, 286
MaeII	ACGT	2 cut(s)	216, 308
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	32, 279
MboI	GATC	2 cut(s)	30, 277
MboII	GAAGA	3 cut(s)	121, 124, 310
MhlI	GDGCHC	3 cut(s)	86, 117, 168
MlsI	TGGCCA	1 cut(s)	68
MluNI	TGGCCA	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	33, 84
MnlI	CCTC	3 cut(s)	8, 263, 279
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	2 cut(s)	102, 183
MslI	CAYNNNNRTG	1 cut(s)	140
Msp20I	TGGCCA	1 cut(s)	68
MspI	CCGG	2 cut(s)	80, 222
MspR9I	CCNGG	2 cut(s)	65, 81
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	81
NcoI	CCATGG	2 cut(s)	9, 199
NdeII	GATC	2 cut(s)	30, 277
NlaIII	CATG	4 cut(s)	13, 98, 145, 203
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	47, 56
PinAI	ACCGGT	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	2 cut(s)	25, 245
RseI	CAYNNNNRTG	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	102, 183
Sau3AI	GATC	2 cut(s)	30, 277
Sau96I	GGNCC	2 cut(s)	25, 245
ScrFI	CCNGG	2 cut(s)	65, 81
SduI	GDGCHC	3 cut(s)	86, 117, 168
SfcI	CTRYAG	1 cut(s)	205
SgrAI	CRCCGGYG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	140
SsiI	CCGC	1 cut(s)	228
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	63, 79
StyI	CCWWGG	2 cut(s)	9, 199
TaaI	ACNGT	2 cut(s)	209, 303
TaiI	ACGT	2 cut(s)	219, 311
TaqI	TCGA	4 cut(s)	45, 111, 192, 298
TfiI	GAWTC	2 cut(s)	47, 56
Tru1I	TTAA	2 cut(s)	102, 183
Tru9I	TTAA	2 cut(s)	102, 183
TscAI	CASTG	2 cut(s)	142, 214
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspRI	CASTG	2 cut(s)	142, 214
VpaK11BI	GGWCC	1 cut(s)	245
XagI	CCTNNNNNAGG	1 cut(s)	327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.