Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23539345 .. 23541660

Gene Structure 2316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCTTTTCCTCACAAGAAATCGTCGGATCATCCAACAGGGCGTTGATTTCAAGCAGATTGACAAAGAATGGCACTGGGATAATTTCATAATTCTTCAAGTGATAATTGCGTCCATTGCCTGCTGTTTGCTTCTGTCGCTAGTGCAGAAGCTTCCCTTGCGGAGTACAATAGGATTTATTGCTGGAAATGCAACCCTATTGGAGCATCTGATATTGAGCATTATTATTGGAGTTCCAGTTTGTTGTACGAATCTGATGGGTTATGGATCAGTGTGCACCATCTATGGCTACGTTTTGGTTTTCGATTTTCTGAGATGTTTGGGGCATTCCAATGTTGAGGTCGTTCCTCATCAACTCTTTGAGAAAAACCCCTTCCTCGGATATCTTCTCTATACTCCAACATACCACAGCCTGCACAATACTGAGATGGACACCAACTTCTGCCTTTTCATGCCTCTCTTTGATGCACTGGGGAAGACACTAAACGCAAAATCACAGGGACTACACAAAGAGATTAGCTTAAATGCAGGTAAAAATGGCAAGGAACCGTATTTCGTTTTCCTCGCACATGTGGTTGATTTGTCGTCGTCTTTGCACGTGCCGTTTGTCTTACGATCATTCTCATCGGTACCATTCTCAATGAGATTCTTCCTAGTGTTTGCTTGGCCTTCAAGCATGGTAACCATGCTAGCAATGTGGGCATGGGCTAAAACTTTCCTAGTTTCATTTTACAACCTCAGAGGCCGCTTGCACCAGACATGGGTTGTGCCTCGATACGGCTTTCAGGTTTGCCCTCCTATATATATATACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006723 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016491 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0042175 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043446 GO:0043447 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0055114 GO:0071704 GO:0071944 GO:0098827 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

272

Amino Acids

31.05

Weight (kDa)

8.89

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	61 - 160	2.8e-07	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	518
Acc65I	GGTACC	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	628
AciI	CCGC	2 cut(s)	160, 745
AclWI	GGATC	2 cut(s)	35, 274
AcvI	CACGTG	1 cut(s)	598
AfaI	GTAC	3 cut(s)	166, 247, 630
AfiI	CCNNNNNNNGG	3 cut(s)	377, 760, 776
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	3 cut(s)	52, 98, 672
AluBI	AGCT	2 cut(s)	151, 519
AluI	AGCT	2 cut(s)	151, 519
Alw21I	GWGCWC	1 cut(s)	278
Alw44I	GTGCAC	1 cut(s)	274
AlwI	GGATC	2 cut(s)	35, 274
AoxI	GGCC	2 cut(s)	665, 742
ApaLI	GTGCAC	1 cut(s)	274
Asp718I	GGTACC	1 cut(s)	628
AsuNHI	GCTAGC	1 cut(s)	688
BaeGI	GKGCMC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	628
BbrPI	CACGTG	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	278
BccI	CCATC	3 cut(s)	250, 287, 421
BceAI	ACGGC	2 cut(s)	586, 793
BfaI	CTAG	4 cut(s)	140, 653, 689, 719
BfuAI	ACCTGC	1 cut(s)	518
BisI	GCNGC	1 cut(s)	745
BlsI	GCNGC	1 cut(s)	746
BmiI	GGNNCC	2 cut(s)	546, 630
BmrI	ACTGGG	2 cut(s)	85, 479
BmsI	GCATC	2 cut(s)	214, 454
BmtI	GCTAGC	1 cut(s)	692
BmuI	ACTGGG	2 cut(s)	85, 479
BpiI	GAAGAC	1 cut(s)	482
BsaAI	YACGTR	1 cut(s)	598
BsaJI	CCNNGG	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 760, 776
Bse1I	ACTGG	3 cut(s)	80, 236, 474
Bse3DI	GCAATG	2 cut(s)	114, 699
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	3 cut(s)	377, 760, 776
BseMI	GCAATG	2 cut(s)	114, 699
BseMII	CTCAG	3 cut(s)	302, 414, 751
BseNI	ACTGG	3 cut(s)	80, 236, 474
BseSI	GKGCMC	1 cut(s)	278
BsgI	GTGCAG	2 cut(s)	164, 398
BshFI	GGCC	2 cut(s)	667, 744
BshNI	GGYRCC	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	3 cut(s)	377, 760, 776
BsmFI	GGGAC	1 cut(s)	513
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	2 cut(s)	667, 744
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	27, 266, 614
BspACI	CCGC	2 cut(s)	160, 745
BspANI	GGCC	2 cut(s)	667, 744
BspCNI	CTCAG	3 cut(s)	303, 415, 750
BspLI	GGNNCC	2 cut(s)	546, 630
BspMI	ACCTGC	1 cut(s)	518
BspOI	GCTAGC	1 cut(s)	692
BspPI	GGATC	2 cut(s)	35, 274
BspT107I	GGYRCC	1 cut(s)	628
BsrDI	GCAATG	2 cut(s)	114, 699
BsrI	ACTGG	3 cut(s)	80, 236, 474
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	3 cut(s)	27, 266, 614
Bst4CI	ACNGT	1 cut(s)	549
BstBAI	YACGTR	1 cut(s)	598
BstC8I	GCNNGC	4 cut(s)	121, 413, 690, 749
BstDEI	CTNAG	3 cut(s)	311, 423, 737
BstEII	GGTNACC	1 cut(s)	679
BstF5I	GGATG	1 cut(s)	30
BstKTI	GATC	3 cut(s)	30, 269, 617
BstMBI	GATC	3 cut(s)	27, 266, 614
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 136, 157, 188, 698
BstNSI	RCATGY	1 cut(s)	572
BstPI	GGTNACC	1 cut(s)	679
BstSLI	GKGCMC	1 cut(s)	278
BstV2I	GAAGAC	1 cut(s)	482
BsuRI	GGCC	2 cut(s)	667, 744
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	3 cut(s)	73, 276, 467
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	4 cut(s)	121, 413, 690, 749
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	3 cut(s)	165, 246, 629
CviAII	CATG	6 cut(s)	451, 569, 676, 685, 702, 759
CviJI	RGCY	8 cut(s)	151, 288, 411, 519, 667, 707, 744, 780
CviKI_1	RGCY	8 cut(s)	151, 288, 411, 519, 667, 707, 744, 780
CviQI	GTAC	3 cut(s)	165, 246, 629
DdeI	CTNAG	3 cut(s)	311, 423, 737
DpnI	GATC	3 cut(s)	29, 268, 616
DpnII	GATC	3 cut(s)	27, 266, 614
Eco32I	GATATC	1 cut(s)	383
Eco72I	CACGTG	1 cut(s)	598
Eco91I	GGTNACC	1 cut(s)	679
EcoO65I	GGTNACC	1 cut(s)	679
EcoRV	GATATC	1 cut(s)	383
FaeI	CATG	6 cut(s)	454, 572, 679, 688, 705, 762
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	6 cut(s)	450, 568, 675, 684, 701, 758
Fnu4HI	GCNGC	1 cut(s)	745
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	745
FspBI	CTAG	4 cut(s)	140, 653, 689, 719
GluI	GCNGC	1 cut(s)	745
HaeIII	GGCC	2 cut(s)	667, 744
HgaI	GACGC	1 cut(s)	99
Hin1II	CATG	6 cut(s)	454, 572, 679, 688, 705, 762
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	250, 645
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	6 cut(s)	27, 210, 255, 312, 380, 740
Hpy8I	GTNNAC	1 cut(s)	276
Hpy99I	CGWCG	2 cut(s)	27, 589
HpyAV	CCTTC	2 cut(s)	382, 678
HpyCH4III	ACNGT	1 cut(s)	549
HpyCH4IV	ACGT	2 cut(s)	291, 597
HpyCH4V	TGCA	8 cut(s)	145, 191, 276, 415, 467, 527, 595, 751
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 136, 157, 188, 698
HpyF3I	CTNAG	3 cut(s)	311, 423, 737
HpySE526I	ACGT	2 cut(s)	291, 597
Hsp92II	CATG	6 cut(s)	454, 572, 679, 688, 705, 762
KpnI	GGTACC	1 cut(s)	632
Kzo9I	GATC	3 cut(s)	27, 266, 614
LmnI	GCTCC	1 cut(s)	202
LweI	GCATC	2 cut(s)	214, 454
MaeI	CTAG	4 cut(s)	140, 653, 689, 719
MaeII	ACGT	2 cut(s)	291, 597
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	3 cut(s)	29, 268, 616
MboI	GATC	3 cut(s)	27, 266, 614
MboII	GAAGA	4 cut(s)	86, 377, 487, 640
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	3 cut(s)	82, 90, 105
MmeI	TCCRAC	3 cut(s)	5, 58, 422
MseI	TTAA	1 cut(s)	521
MslI	CAYNNNNRTG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	325
MwoI	GCNNNNNNNGC	5 cut(s)	116, 136, 157, 188, 698
NdeII	GATC	3 cut(s)	27, 266, 614
NheI	GCTAGC	1 cut(s)	688
NlaIII	CATG	6 cut(s)	454, 572, 679, 688, 705, 762
NlaIV	GGNNCC	2 cut(s)	546, 630
NspI	RCATGY	1 cut(s)	572
PciI	ACATGT	1 cut(s)	568
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	250, 645
PkrI	GCNGC	1 cut(s)	746
PmaCI	CACGTG	1 cut(s)	598
PmlI	CACGTG	1 cut(s)	598
Ppu21I	YACGTR	1 cut(s)	598
PscI	ACATGT	1 cut(s)	568
PspCI	CACGTG	1 cut(s)	598
PspEI	GGTNACC	1 cut(s)	679
PspN4I	GGNNCC	2 cut(s)	546, 630
RsaI	GTAC	3 cut(s)	166, 247, 630
RsaNI	GTAC	3 cut(s)	165, 246, 629
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	1 cut(s)	745
Sau3AI	GATC	3 cut(s)	27, 266, 614
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	8 cut(s)	153, 294, 342, 521, 532, 600, 738, 789
SfaNI	GCATC	2 cut(s)	214, 454
SmiMI	CAYNNNNRTG	1 cut(s)	330
Sse9I	AATT	3 cut(s)	82, 90, 105
SsiI	CCGC	2 cut(s)	160, 745
SspMI	CTAG	4 cut(s)	140, 653, 689, 719
TaaI	ACNGT	1 cut(s)	549
TaiI	ACGT	2 cut(s)	294, 600
TaqI	TCGA	2 cut(s)	303, 772
TasI	AATT	3 cut(s)	82, 90, 105
TatI	WGTACW	1 cut(s)	164
TauI	GCSGC	1 cut(s)	747
TfiI	GAWTC	2 cut(s)	250, 645
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	3 cut(s)	80, 276, 474
TspDTI	ATGAA	3 cut(s)	76, 439, 714
TspRI	CASTG	3 cut(s)	80, 276, 474
VneI	GTGCAC	1 cut(s)	274
XceI	RCATGY	1 cut(s)	572
XspI	CTAG	4 cut(s)	140, 653, 689, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.