pycom16g23610

FGGY carbohydrate kinase domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Reverse (-)
24767524 .. 24767965
442 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
ATGAAATTATCCATGGACCATCTTCTGCAGCTTCTATGGGTGAAAGAAAATCTTCCCGAGTCTTGGTCAATGGTCTTCAAGTGGATGGACCTGAGTGATTGGTTATCATACGGTTGTACATCTTTGGCCACAGGAGATGATACACGGAGTCTCTGTACGATAGTATGCAAGTGGACATATCTTGGTCATGCACATATGCAGAAGATTGGATTGGGTGATCTTGTAGATGGTCATCATGCTAAGATAGGTAAGGACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FGGY_C FGGY_N

Protein Analysis

87

Amino Acids

9.82

Weight (kDa)

6.15

Isoelectric Point (pI)

22.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 126
AfaI GTAC 2 cut(s) 118, 157
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 1 cut(s) 79
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 28
Asp700I GAANNNNTTC 1 cut(s) 51
AspS9I GGNCC 2 cut(s) 16, 88
AsuHPI GGTGA 2 cut(s) 52, 227
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 2 cut(s) 16, 88
BalI TGGCCA 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 40
BccI CCATC 3 cut(s) 27, 79, 221
BcoDI GTCTC 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme18I GGWCC 2 cut(s) 16, 88
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 16, 88
BpiI GAAGAC 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse8I GATNNNNATC 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 90
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 116
Bsp143I GATC 1 cut(s) 217
Bsp19I CCATGG 1 cut(s) 12
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 84
BspMAI CTGCAG 1 cut(s) 30
BsrGI TGTACA 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 113
BstAUI TGTACA 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 92, 240
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 16, 88
Csp6I GTAC 2 cut(s) 117, 156
CviAII CATG 3 cut(s) 13, 188, 236
CviJI RGCY 2 cut(s) 31, 128
CviKI_1 RGCY 2 cut(s) 31, 128
CviQI GTAC 2 cut(s) 117, 156
DdeI CTNAG 2 cut(s) 92, 240
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 12
Eco47I GGWCC 2 cut(s) 16, 88
Eco88I CYCGRG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 3 cut(s) 16, 191, 239
FaiI YATR 9 cut(s) 14, 37, 109, 166, 178, 189, 195, 197, 237
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 3 cut(s) 12, 187, 235
FauNDI CATATG 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 128
Hin1II CATG 3 cut(s) 16, 191, 239
HinfI GANTC 2 cut(s) 59, 148
HphI GGTGA 2 cut(s) 52, 227
Hpy166II GTNNAC 1 cut(s) 174
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 174
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 4 cut(s) 28, 168, 191, 199
HpyF3I CTNAG 2 cut(s) 92, 240
Hsp92II CATG 3 cut(s) 16, 191, 239
Kzo9I GATC 1 cut(s) 217
LpnPI CCDG 2 cut(s) 104, 117
Lsp1109I GCAGC 1 cut(s) 40
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 4 cut(s) 14, 44, 67, 214
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 128
MlyI GAGTC 2 cut(s) 68, 157
Mox20I TGGCCA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 51
MscI TGGCCA 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 128
NcoI CCATGG 1 cut(s) 12
NdeI CATATG 1 cut(s) 195
NdeII GATC 1 cut(s) 217
NlaIII CATG 3 cut(s) 16, 191, 239
PdmI GAANNNNTTC 1 cut(s) 51
PkrI GCNGC 1 cut(s) 30
PleI GAGTC 2 cut(s) 67, 156
PpsI GAGTC 2 cut(s) 67, 156
PspPI GGNCC 2 cut(s) 16, 88
PstI CTGCAG 1 cut(s) 30
RsaI GTAC 2 cut(s) 118, 157
RsaNI GTAC 2 cut(s) 117, 156
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 2 cut(s) 16, 88
SchI GAGTC 2 cut(s) 68, 157
SetI ASST 3 cut(s) 33, 93, 250
SfcI CTRYAG 1 cut(s) 26
SinI GGWCC 2 cut(s) 16, 88
Sse9I AATT 1 cut(s) 5
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 113
TasI AATT 1 cut(s) 5
TatI WGTACW 1 cut(s) 116
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 16, 88
XmnI GAANNNNTTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.