Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

25084160 .. 25084834

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGGATGGTCGATACAGAGGTGGAATAAGTTTTATCAGGATCTACCCAGTAGGCAGCTTAAGGTTAAGGTTGTGGACAGAACTGCTGTTGTTACAGAAAATGCAGAAACTGTGGCTGTGACAACCCCTGGCATTCAAGAAGCCATTGATGCTGTTAAATACCCTAGAGGCCGATGTTTTATACGACCATCAGGAACAGAAGATGTTATACGCGTATATGCAGAGGCATCCACACAGAATGCAGCAGACAGCTTGGCAAACTCTGTAGCAGAACTAGTAGACCGGTTTCTTGGGTTTGGAAGCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006040 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009987 GO:0018130 GO:0019438 GO:0030054 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0055044 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko01130 map00520 map01100 map01130

Pfam Domains

Protein Families

PGM_PMM_I PGM_PMM_III PGM_PMM_IV

Protein Analysis

103

Amino Acids

11.27

Weight (kDa)

6.22

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGM_PMM_IV	PF00408	21 - 91	4.4e-14	Phosphoglucomutase/phosphomannomutase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	1 cut(s)	213
AclWI	GGATC	1 cut(s)	48
AflII	CTTAAG	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	211
AgeI	ACCGGT	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	137
AhlI	ACTAGT	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	3 cut(s)	58, 252, 303
AluI	AGCT	3 cut(s)	58, 252, 303
AlwI	GGATC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	55, 242
AsiGI	ACCGGT	1 cut(s)	282
BaeI	ACNNNNGTAYC	1 cut(s)	38
BarI	GAAGNNNNNNTAC	2 cut(s)	192, 224
BbvI	GCAGC	2 cut(s)	67, 254
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	129
BcuI	ACTAGT	1 cut(s)	274
BfaI	CTAG	3 cut(s)	165, 275, 307
BfmI	CTRYAG	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	59
BisI	GCNGC	2 cut(s)	56, 243
BlsI	GCNGC	2 cut(s)	57, 244
Bme1390I	CCNGG	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	129
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	2 cut(s)	139, 236
BmuI	ACTGGG	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	282
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	11, 227
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	67, 254
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	171
BshTI	ACCGGT	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	283
BsmI	GAATGC	2 cut(s)	132, 244
BsnI	GGCC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	213
BspPI	GGATC	1 cut(s)	48
BspTI	CTTAAG	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	112
BstAFI	CTTAAG	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	11, 227
BstFNI	CGCG	1 cut(s)	213
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	67, 254
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	11, 227
CaiI	CAGNNNCTG	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	282
CspAI	ACCGGT	1 cut(s)	282
CviJI	RGCY	6 cut(s)	58, 116, 143, 171, 252, 303
CviKI_1	RGCY	6 cut(s)	58, 116, 143, 171, 252, 303
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	127
FaiI	YATR	4 cut(s)	182, 209, 217, 219
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	56, 243
FokI	GGATG	2 cut(s)	18, 214
Fsp4HI	GCNGC	2 cut(s)	56, 243
FspBI	CTAG	3 cut(s)	165, 275, 307
GluI	GCNGC	2 cut(s)	56, 243
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	283
HpaII	CCGG	1 cut(s)	283
Hpy166II	GTNNAC	2 cut(s)	76, 280
Hpy188III	TCNNGA	3 cut(s)	38, 137, 192
Hpy8I	GTNNAC	2 cut(s)	76, 280
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	3 cut(s)	104, 221, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	308
LpnPI	CCDG	6 cut(s)	23, 61, 114, 141, 177, 296
Lsp1109I	GCAGC	2 cut(s)	67, 254
LweI	GCATC	2 cut(s)	139, 236
MaeI	CTAG	3 cut(s)	165, 275, 307
MaeIII	GTNAC	2 cut(s)	91, 118
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	1 cut(s)	212
MflI	RGATCY	1 cut(s)	40
MluI	ACGCGT	1 cut(s)	211
MnlI	CCTC	3 cut(s)	12, 161, 217
MseI	TTAA	3 cut(s)	60, 66, 156
MspCI	CTTAAG	1 cut(s)	59
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	129
Mva1269I	GAATGC	2 cut(s)	132, 244
MvaI	CCWGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	118
PctI	GAATGC	2 cut(s)	132, 244
PinAI	ACCGGT	1 cut(s)	282
PkrI	GCNGC	2 cut(s)	57, 244
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	40
SaqAI	TTAA	3 cut(s)	60, 66, 156
SatI	GCNGC	2 cut(s)	56, 243
Sau3AI	GATC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	6 cut(s)	23, 60, 66, 72, 254, 305
SfaNI	GCATC	2 cut(s)	139, 236
SfcI	CTRYAG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SpeI	ACTAGT	1 cut(s)	274
SspMI	CTAG	3 cut(s)	165, 275, 307
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	11
Tru1I	TTAA	3 cut(s)	60, 66, 156
Tru9I	TTAA	3 cut(s)	60, 66, 156
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	55, 242
Tsp45I	GTSAC	1 cut(s)	118
Vha464I	CTTAAG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	3 cut(s)	165, 275, 307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.