Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

25088178 .. 25088607

Gene Structure 430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAATGAAGACCAACGTTCACTCCTCCTCAGCTCCTCATCTCGCTTCCTGCCTCCACAAGGTGTGAAACTATCGTATGGAACGGCTGGCAGAGCTGACGCCTCAATCCTCCAATCCACAGTTTACAGGGTGGGAATTTTGGCTGCTCTAAGGGCCCTCAAGACCCAATCAATGATCGGCCTGATGATCACAACATCTCACAACAAAGTCTCTAATAATGGAGTCAAAGTTGCTGACCCGAGTGGTGGAATGCTTTCTCAAGACTGGAAGCCATTCACAGATACCTTCGCCAATGCTCCTGATCCCCAACAGCTTATTCATGTTTGTTTTTCTTTTTCTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006040 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009987 GO:0018130 GO:0019438 GO:0030054 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0055044 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko01130 map00520 map01100 map01130

Pfam Domains

Protein Families

PGM_PMM_I PGM_PMM_III PGM_PMM_IV

Protein Analysis

115

Amino Acids

12.3

Weight (kDa)

9.36

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	16
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	99
AdeI	CACNNNGTG	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	59, 245
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
AluBI	AGCT	3 cut(s)	33, 95, 313
AluI	AGCT	3 cut(s)	33, 95, 313
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	238
AoxI	GGCC	2 cut(s)	153, 178
ApaI	GGGCCC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	135
Asp700I	GAANNNNTTC	2 cut(s)	253, 272
AspS9I	GGNCC	2 cut(s)	153, 154
AvaI	CYCGRG	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	99
BclI	TGATCA	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	153, 154
BmiI	GGNNCC	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	29
BpuEI	CTTGAG	2 cut(s)	143, 243
BsaHI	GRCGYC	1 cut(s)	99
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 213, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 245
Bse1I	ACTGG	1 cut(s)	269
BseLI	CCNNNNNNNGG	2 cut(s)	59, 245
BseMII	CTCAG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	3 cut(s)	14, 17, 25
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	130
BshFI	GGCC	2 cut(s)	155, 180
BsiHKCI	CYCGRG	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	59, 245
BsmAI	GTCTC	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	255
BsnI	GGCC	2 cut(s)	155, 180
BsoBI	CYCGRG	1 cut(s)	238
Bsp120I	GGGCCC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	174, 186, 301
BspANI	GGCC	2 cut(s)	155, 180
BspCNI	CTCAG	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	269
BssMI	GATC	3 cut(s)	174, 186, 301
BssNI	GRCGYC	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	2 cut(s)	29, 149
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstKTI	GATC	3 cut(s)	177, 189, 304
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	3 cut(s)	174, 186, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 152
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	155, 180
Cac8I	GCNNGC	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	153, 154
CseI	GACGC	1 cut(s)	107
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	8 cut(s)	33, 86, 95, 143, 155, 180, 271, 313
CviKI_1	RGCY	8 cut(s)	33, 86, 95, 143, 155, 180, 271, 313
DdeI	CTNAG	2 cut(s)	29, 149
DpnI	GATC	3 cut(s)	176, 188, 303
DpnII	GATC	3 cut(s)	174, 186, 301
DraIII	CACNNNGTG	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	238
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	2 cut(s)	153, 154
EcoT38I	GRGCYC	1 cut(s)	157
FaeI	CATG	1 cut(s)	323
FaiI	YATR	4 cut(s)	78, 321, 341, 343
FatI	CATG	1 cut(s)	319
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	144
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	155, 180
HgaI	GACGC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	323
HinfI	GANTC	1 cut(s)	222
Hpy166II	GTNNAC	2 cut(s)	20, 124
Hpy188III	TCNNGA	3 cut(s)	160, 260, 299
Hpy8I	GTNNAC	2 cut(s)	20, 124
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 152
HpyF3I	CTNAG	2 cut(s)	29, 149
HpySE526I	ACGT	1 cut(s)	16
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	3 cut(s)	174, 186, 301
LmnI	GCTCC	2 cut(s)	38, 301
LpnPI	CCDG	6 cut(s)	62, 72, 112, 194, 250, 312
Lsp1109I	GCAGC	1 cut(s)	130
MaeII	ACGT	1 cut(s)	16
MalI	GATC	3 cut(s)	176, 188, 303
MboI	GATC	3 cut(s)	174, 186, 301
MboII	GAAGA	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	231
MnlI	CCTC	7 cut(s)	35, 38, 46, 63, 112, 119, 167
MroXI	GAANNNNTTC	2 cut(s)	253, 272
Mva1269I	GAATGC	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	92, 152
NdeII	GATC	3 cut(s)	174, 186, 301
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	1 cut(s)	155
PctI	GAATGC	1 cut(s)	255
PdmI	GAANNNNTTC	2 cut(s)	253, 272
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Psp1406I	AACGTT	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	155
PspOMI	GGGCCC	1 cut(s)	153
PspPI	GGNCC	2 cut(s)	153, 154
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	3 cut(s)	174, 186, 301
Sau96I	GGNCC	2 cut(s)	153, 154
SchI	GAGTC	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	6 cut(s)	19, 35, 64, 97, 287, 315
SmlI	CTYRAG	2 cut(s)	158, 258
SmoI	CTYRAG	2 cut(s)	158, 258
Sse9I	AATT	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	19
TasI	AATT	1 cut(s)	135
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	3 cut(s)	17, 21, 308
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	135
XmnI	GAANNNNTTC	2 cut(s)	253, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.