Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

25865606 .. 25865869

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGATTTGTGGTTGTAGATGTGCAGTGAACGGCTACGTTGATTTGATTTCTATGATCCTTAGGGCATTCTCATTTGTTATTGAAGGCCTATACAAGCAGCAGCTGGCTTTAGCACAACCATTTTCTGTGAGGAAGAAAAGTGAGCAAGTTCGTCCCTTGGTGCTCGCCCTTCAACTTTCTCTCCTGGGAGAACAAAAAGCGAGTTTCACCTTCTTTTGGAATTCCTTTAAGAATCGCAAGAAGGGCACTTCTCACCCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

88

Amino Acids

9.83

Weight (kDa)

9.95

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	2 cut(s)	83, 173
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw21I	GWGCWC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	49
AlwNI	CAGNNNCTG	1 cut(s)	103
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	97, 100
ApoI	RAATTY	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	199, 245
AxyI	CCTNAGG	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	109, 112
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	185
BisI	GCNGC	2 cut(s)	98, 101
BlsI	GCNGC	2 cut(s)	99, 102
Bme1390I	CCNGG	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	156, 184
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse21I	CCTNAGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	156, 184
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	109, 112
BseYI	CCCAGC	1 cut(s)	256
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	165, 248
Bsp143I	GATC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	156, 184
BssMI	GATC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	105, 165
BstDEI	CTNAG	1 cut(s)	59
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	109, 112
Bsu36I	CCTNAGG	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	105, 165
CaiI	CAGNNNCTG	1 cut(s)	103
CviJI	RGCY	5 cut(s)	33, 87, 103, 107, 260
CviKI_1	RGCY	5 cut(s)	33, 87, 103, 107, 260
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	87
Eco81I	CCTNAGG	1 cut(s)	59
EcoRI	GAATTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaiI	YATR	2 cut(s)	53, 91
FaqI	GGGAC	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	98, 101
Fsp4HI	GCNGC	2 cut(s)	98, 101
GluI	GCNGC	2 cut(s)	98, 101
GsaI	CCCAGC	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	87
HinfI	GANTC	1 cut(s)	232
HphI	GGTGA	2 cut(s)	199, 245
Hpy166II	GTNNAC	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	4 cut(s)	77, 179, 220, 235
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	54
LpnPI	CCDG	3 cut(s)	89, 170, 197
Lsp1109I	GCAGC	2 cut(s)	109, 112
MaeII	ACGT	1 cut(s)	36
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	1 cut(s)	145
MhlI	GDGCHC	2 cut(s)	165, 248
MluCI	AATT	1 cut(s)	220
MnlI	CCTC	1 cut(s)	123
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	243
NdeII	GATC	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	87
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	99, 102
Psp6I	CCWGG	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	98, 101
Sau3AI	GATC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	2 cut(s)	165, 248
SetI	ASST	3 cut(s)	39, 105, 212
SgeI	CNNG	9 cut(s)	106, 116, 158, 169, 176, 196, 197, 213, 250
Sse9I	AATT	1 cut(s)	220
SseBI	AGGCCT	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	156
TaiI	ACGT	1 cut(s)	39
TasI	AATT	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	97, 100
TspRI	CASTG	1 cut(s)	30
XapI	RAATTY	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.