Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

26095058 .. 26095312

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGAGGAACACCGGAATTTGTTGTGCCAAAGCTGCTATTCTCTCTTCGCTCAAATCATCGCCCAATTGCCGCCGGCGACCCGTCTCTTTCGTCTTTCCCAACCCTTTCCCCAACTCCGCCCAAAAGACGGAGGCGAGGACCTCTTCATGCACCAGTCATCGATCAGATCCGACGGCTTCCGCACCATCTCTGAAGGCAAGTCCTTCGAATTCCTCATCTACTTCGGCGATGACAGAAAGACCAACAAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010501 GO:0016043 GO:0016049 GO:0016070 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0034641 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0060560 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

85

Amino Acids

9.79

Weight (kDa)

7.82

Isoelectric Point (pI)

72.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	40 - 76	6.8e-08	'Cold-shock' DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	71, 118, 181
AclWI	GGATC	1 cut(s)	162
AcsI	RAATTY	2 cut(s)	16, 209
AcuI	CTGAAG	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	128
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	2 cut(s)	16, 209
AspS9I	GGNCC	1 cut(s)	139
AsuII	TTCGAA	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BcoDI	GTCTC	1 cut(s)	89
BisI	GCNGC	2 cut(s)	34, 71
BlsI	GCNGC	2 cut(s)	35, 72
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
Bpu14I	TTCGAA	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	154
BseCI	ATCGAT	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	13, 74
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	162, 167
BspACI	CCGC	3 cut(s)	71, 118, 181
BspDI	ATCGAT	1 cut(s)	161
BspPI	GGATC	1 cut(s)	162
BspT104I	TTCGAA	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	73
BssMI	GATC	2 cut(s)	162, 167
Bst6I	CTCTTC	2 cut(s)	50, 149
BstBI	TTCGAA	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	75
BstKTI	GATC	2 cut(s)	165, 170
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	2 cut(s)	162, 167
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
Bsu15I	ATCGAT	1 cut(s)	161
BsuTUI	ATCGAT	1 cut(s)	161
BtgZI	GCGATG	2 cut(s)	43, 243
Cac8I	GCNNGC	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	161
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	2 cut(s)	33, 177
CviKI_1	RGCY	2 cut(s)	33, 177
DpnI	GATC	2 cut(s)	164, 169
DpnII	GATC	2 cut(s)	162, 167
Eam1104I	CTCTTC	2 cut(s)	50, 149
EarI	CTCTTC	2 cut(s)	50, 149
EciI	GGCGGA	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRI	GAATTC	1 cut(s)	209
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	1 cut(s)	151
FaiI	YATR	1 cut(s)	149
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	34, 71
Fsp4HI	GCNGC	2 cut(s)	34, 71
GluI	GCNGC	2 cut(s)	34, 71
HapII	CCGG	2 cut(s)	13, 74
Hin1II	CATG	1 cut(s)	151
HpaII	CCGG	2 cut(s)	13, 74
Hpy188I	TCNGA	3 cut(s)	167, 172, 193
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	188, 214
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	162, 167
LpnPI	CCDG	3 cut(s)	26, 87, 167
Lsp1109I	GCAGC	1 cut(s)	20
MalI	GATC	2 cut(s)	164, 169
MboI	GATC	2 cut(s)	162, 167
MboII	GAAGA	2 cut(s)	37, 136
MfeI	CAATTG	1 cut(s)	65
MflI	RGATCY	1 cut(s)	167
MluCI	AATT	3 cut(s)	16, 65, 209
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	4 cut(s)	125, 130, 152, 224
MreI	CGCCGGCG	1 cut(s)	73
MroNI	GCCGGC	1 cut(s)	73
MspI	CCGG	2 cut(s)	13, 74
MunI	CAATTG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	33
NaeI	GCCGGC	1 cut(s)	75
NdeII	GATC	2 cut(s)	162, 167
NgoMIV	GCCGGC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	207
PdiI	GCCGGC	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	35, 72
PpuMI	RGGWCCY	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	139
PspPPI	RGGWCCY	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	167
SatI	GCNGC	2 cut(s)	34, 71
Sau3AI	GATC	2 cut(s)	162, 167
Sau96I	GGNCC	1 cut(s)	139
SetI	ASST	2 cut(s)	35, 144
SfuI	TTCGAA	1 cut(s)	207
SgeI	CNNG	7 cut(s)	25, 86, 93, 148, 160, 166, 211
SgrAI	CRCCGGYG	1 cut(s)	73
SinI	GGWCC	1 cut(s)	139
Sse9I	AATT	3 cut(s)	16, 65, 209
SsiI	CCGC	3 cut(s)	71, 118, 181
TaqI	TCGA	2 cut(s)	161, 207
TasI	AATT	3 cut(s)	16, 65, 209
TauI	GCSGC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	2 cut(s)	16, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.