Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

26858621 .. 26862315

Gene Structure 3695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGAGCAAAAGGAGAGAGAAAGCTGGAAGGAATCGGTGAGAAAGATGCTTCCACCGAGTGCTTCAATCCCTGAAGATGCTGCCAATCTTGATTACTCTTTAGCCATGGAGTATGAGGGCCCTCATGTCCCTTATGATGTACCTAGGGTCAAACCCCTTGATGTTAATTCACATGGAATCCCAACTGCAGATGCGCTATCTGAATCACAAAGATCGGTTACCAGTACCGATCCACCAGTTATTGAACCAATGCCTCTGCCAGTGTCTCGTATTGCTGGTGTCACAAAGTTCCCCTACTCAAAGTCCAAGGTTATCGGGAAGCTCAGAATCTGTAGTGTCTGTCTTGCAAAACCCAGATTATTCTTCAGCTTCACCTTCAAAGCCGGCTTTCCAGCTTATGTTGGGGTTTCTAAGGAGAAAAAGAAGAATAAAAGTAGAGTTTGTTACCGTTGCCGAAAAGGAAAATGGGAAACTAAGGAGTCGTGTCTGGTTTGTGATGCTAAGTACTGCAGCAATTGTGTGCTTAGGGCTATGGGTTCCATGCCCGAAGGGCGTAAGTGTGTGACATGTATTGGTCAGCCGATTGATGAATCAAAGCAGTTAAAATTGGGTAAACAGTCAAGGGTGTTGTCCAGATTGCTTAGCCCATTGGAAGTTAAGCAGATAATGAAACTGATAGTGAATGGGTTCCCTCTAAAGTCAGAAAAGATGGCTGAATTACTTGGATGCCCCTTACTTCCCCGGAATTTGAAGCCCGGTAGATATTGGTATGATAAAGAATCTGGTCTGTGGGGAAAGGAGGGAGAAAGACCAGATAGAATCATGAGTTCAAACCTAAATTTTTCCGAGAAACTCAGCCCAGATGCAAGCAATGGAAACACTGAGGTTTATATCAATGGTCAGAATAATATCAGAGGAAATATTTGGGAGAAGGCAACTCCTCGGTTTGTCTGTTCCCTATTCTCTTTGCCTGTGCCTCAAGGTCAACCTAATGGACCAAAAGATGAGGCTAGCAATTATACCACTGTTCCAAATTATTTGGAGCAGAAAAAAGTTCAGAAGCTGATTCTTCTTGGACTTCAAGGGTCTGGGACCAGCATATCTTCAAACAGATGCAGCCCTTTATTTAAAATCTTTAGTAACATGTACAAATATCTAAGCATTTTGCTTTATGGACGAGAGCGCTTTGAAGAAGAGGCTTTGTCTCGGATGGAAGGACGTTCTCATGATCAAAACGCTGAAGCAGGTACTTTTGCAAATACAGATACAATATTGAATTTTCAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009898 GO:0009987 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

430

Amino Acids

48.18

Weight (kDa)

9.28

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1235
AclWI	GGATC	1 cut(s)	224
AcsI	RAATTY	3 cut(s)	745, 838, 1276
AcuI	CTGAAG	3 cut(s)	93, 349, 1260
AdeI	CACNNNGTG	1 cut(s)	59
AfaI	GTAC	5 cut(s)	141, 226, 506, 1148, 1249
AfeI	AGCGCT	1 cut(s)	1184
AflIII	ACRYGT	2 cut(s)	566, 1143
AluBI	AGCT	5 cut(s)	24, 322, 369, 395, 1063
AluI	AGCT	5 cut(s)	24, 322, 369, 395, 1063
Alw26I	GTCTC	2 cut(s)	270, 1209
AlwI	GGATC	1 cut(s)	224
AlwNI	CAGNNNCTG	2 cut(s)	330, 1063
Aor51HI	AGCGCT	1 cut(s)	1184
AoxI	GGCC	1 cut(s)	118
ApaI	GGGCCC	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	80, 510, 1116
ApoI	RAATTY	3 cut(s)	745, 838, 1276
Asp700I	GAANNNNTTC	1 cut(s)	686
AspA2I	CCTAGG	1 cut(s)	143
AspLEI	GCGC	2 cut(s)	196, 1185
AspS9I	GGNCC	4 cut(s)	118, 119, 995, 1092
AsuC2I	CCSGG	2 cut(s)	742, 756
AsuHPI	GGTGA	2 cut(s)	49, 364
AsuNHI	GCTAGC	1 cut(s)	1010
AvaII	GGWCC	2 cut(s)	995, 1092
AvrII	CCTAGG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	67, 522, 1128
BccI	CCATC	2 cut(s)	703, 1204
BclI	TGATCA	1 cut(s)	1228
BcnI	CCSGG	2 cut(s)	742, 756
BcoDI	GTCTC	2 cut(s)	270, 1209
BfaI	CTAG	2 cut(s)	144, 1011
BfmI	CTRYAG	3 cut(s)	186, 331, 508
BfoI	RGCGCY	1 cut(s)	1186
BfuAI	ACCTGC	1 cut(s)	1235
BglI	GCCNNNNNGGC	1 cut(s)	550
BisI	GCNGC	3 cut(s)	81, 511, 1117
BlnI	CCTAGG	1 cut(s)	143
BlpI	GCTNAGC	1 cut(s)	641
BlsI	GCNGC	3 cut(s)	82, 512, 1118
BmcAI	AGTACT	1 cut(s)	506
Bme1390I	CCNGG	2 cut(s)	742, 756
Bme18I	GGWCC	2 cut(s)	995, 1092
BmgT120I	GGNCC	4 cut(s)	118, 119, 995, 1092
BmiI	GGNNCC	4 cut(s)	120, 538, 689, 1093
BmrFI	CCNGG	2 cut(s)	742, 756
BmsI	GCATC	7 cut(s)	36, 67, 181, 487, 716, 853, 1103
BmtI	GCTAGC	1 cut(s)	1014
Bpu10I	CCTNAGC	1 cut(s)	524
Bpu1102I	GCTNAGC	1 cut(s)	641
BpuEI	CTTGAG	1 cut(s)	963
BpuMI	CCSGG	2 cut(s)	742, 756
BsaJI	CCNNGG	5 cut(s)	105, 143, 306, 740, 941
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	3 cut(s)	222, 236, 260
Bse3DI	GCAATG	1 cut(s)	877
BseDI	CCNNGG	5 cut(s)	105, 143, 306, 740, 941
BseGI	GGATG	2 cut(s)	731, 1215
BseMI	GCAATG	1 cut(s)	877
BseMII	CTCAG	3 cut(s)	337, 868, 873
BseNI	ACTGG	3 cut(s)	222, 236, 260
BseRI	GAGGAG	1 cut(s)	930
BseSI	GKGCMC	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	67, 522, 1128
BshFI	GGCC	1 cut(s)	120
BsiSI	CCGG	3 cut(s)	384, 742, 756
BslFI	GGGAC	2 cut(s)	113, 1105
BsmAI	GTCTC	2 cut(s)	270, 1209
BsmFI	GGGAC	2 cut(s)	113, 1105
BsnI	GGCC	1 cut(s)	120
Bsp120I	GGGCCC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp1407I	TGTACA	1 cut(s)	1146
Bsp143I	GATC	3 cut(s)	212, 229, 1228
Bsp1720I	GCTNAGC	1 cut(s)	641
Bsp19I	CCATGG	1 cut(s)	105
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	3 cut(s)	336, 867, 874
BspHI	TCATGA	2 cut(s)	822, 1225
BspLI	GGNNCC	4 cut(s)	120, 538, 689, 1093
BspMAI	CTGCAG	2 cut(s)	190, 512
BspMI	ACCTGC	1 cut(s)	1235
BspOI	GCTAGC	1 cut(s)	1014
BspPI	GGATC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	877
BsrFI	RCCGGY	1 cut(s)	383
BsrGI	TGTACA	1 cut(s)	1146
BsrI	ACTGG	3 cut(s)	222, 236, 260
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	5 cut(s)	105, 143, 306, 740, 941
BssMI	GATC	3 cut(s)	212, 229, 1228
BssT1I	CCWWGG	3 cut(s)	105, 143, 306
Bst4CI	ACNGT	3 cut(s)	449, 618, 1027
Bst6I	CTCTTC	1 cut(s)	1188
BstAUI	TGTACA	1 cut(s)	1146
BstC8I	GCNNGC	3 cut(s)	385, 868, 1012
BstDEI	CTNAG	9 cut(s)	323, 411, 474, 501, 524, 641, 854, 882, 1157
BstDSI	CCRYGG	1 cut(s)	105
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	731, 1215
BstH2I	RGCGCY	1 cut(s)	1186
BstHHI	GCGC	2 cut(s)	196, 1185
BstKTI	GATC	3 cut(s)	215, 232, 1231
BstMAI	GTCTC	2 cut(s)	270, 1209
BstMBI	GATC	3 cut(s)	212, 229, 1228
BstMWI	GCNNNNNNNGC	1 cut(s)	550
BstNSI	RCATGY	2 cut(s)	570, 1147
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	740, 754
BstSFI	CTRYAG	3 cut(s)	186, 331, 508
BstSLI	GKGCMC	1 cut(s)	122
BstV1I	GCAGC	3 cut(s)	67, 522, 1128
BsuRI	GGCC	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	731, 1215
BtsIMutI	CAGTG	3 cut(s)	267, 879, 1023
BveI	ACCTGC	1 cut(s)	1235
Cac8I	GCNNGC	3 cut(s)	385, 868, 1012
CaiI	CAGNNNCTG	2 cut(s)	330, 1063
CciI	TCATGA	2 cut(s)	822, 1225
CfoI	GCGC	2 cut(s)	196, 1185
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	4 cut(s)	118, 119, 995, 1092
Csp6I	GTAC	5 cut(s)	140, 225, 505, 1147, 1248
CviAII	CATG	8 cut(s)	106, 125, 173, 541, 567, 823, 1144, 1226
CviQI	GTAC	5 cut(s)	140, 225, 505, 1147, 1248
DdeI	CTNAG	9 cut(s)	323, 411, 474, 501, 524, 641, 854, 882, 1157
DpnI	GATC	3 cut(s)	214, 231, 1230
DpnII	GATC	3 cut(s)	212, 229, 1228
DraI	TTTAAA	1 cut(s)	1129
DraIII	CACNNNGTG	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	1188
EarI	CTCTTC	1 cut(s)	1188
Eco130I	CCWWGG	3 cut(s)	105, 143, 306
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	2 cut(s)	995, 1092
Eco47III	AGCGCT	1 cut(s)	1184
Eco57I	CTGAAG	3 cut(s)	93, 349, 1260
Eco91I	GGTNACC	1 cut(s)	217
EcoO109I	RGGNCCY	2 cut(s)	118, 119
EcoO65I	GGTNACC	1 cut(s)	217
EcoT14I	CCWWGG	3 cut(s)	105, 143, 306
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	3 cut(s)	105, 143, 306
FaeI	CATG	8 cut(s)	109, 128, 176, 544, 570, 826, 1147, 1229
FaqI	GGGAC	2 cut(s)	113, 1105
FatI	CATG	8 cut(s)	105, 124, 172, 540, 566, 822, 1143, 1225
FbaI	TGATCA	1 cut(s)	1228
Fnu4HI	GCNGC	3 cut(s)	81, 511, 1117
FokI	GGATG	2 cut(s)	738, 1222
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	3 cut(s)	81, 511, 1117
FspBI	CTAG	2 cut(s)	144, 1011
GlaI	GCGC	2 cut(s)	195, 1184
GluI	GCNGC	3 cut(s)	81, 511, 1117
HaeII	RGCGCY	1 cut(s)	1186
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	3 cut(s)	384, 742, 756
HhaI	GCGC	2 cut(s)	196, 1185
Hin1II	CATG	8 cut(s)	109, 128, 176, 544, 570, 826, 1147, 1229
Hin6I	GCGC	2 cut(s)	194, 1183
HinP1I	GCGC	2 cut(s)	194, 1183
HincII	GTYRAC	1 cut(s)	986
HindII	GTYRAC	1 cut(s)	986
HinfI	GANTC	9 cut(s)	32, 177, 203, 327, 479, 590, 779, 819, 1066
HpaII	CCGG	3 cut(s)	384, 742, 756
HphI	GGTGA	2 cut(s)	49, 364
Hpy166II	GTNNAC	2 cut(s)	614, 986
Hpy188I	TCNGA	8 cut(s)	202, 326, 703, 847, 903, 914, 1059, 1209
Hpy188III	TCNNGA	5 cut(s)	89, 316, 633, 823, 1226
Hpy8I	GTNNAC	2 cut(s)	614, 986
HpyAV	CCTTC	5 cut(s)	22, 385, 542, 925, 1208
HpyCH4III	ACNGT	3 cut(s)	449, 618, 1027
HpyCH4IV	ACGT	1 cut(s)	1219
HpyCH4V	TGCA	6 cut(s)	188, 347, 510, 866, 1116, 1256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	550
HpyF3I	CTNAG	9 cut(s)	323, 411, 474, 501, 524, 641, 854, 882, 1157
HpySE526I	ACGT	1 cut(s)	1219
Hsp92II	CATG	8 cut(s)	109, 128, 176, 544, 570, 826, 1147, 1229
HspAI	GCGC	2 cut(s)	194, 1183
KroI	GCCGGC	1 cut(s)	383
KroNI	GCCGGC	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	1228
Kzo9I	GATC	3 cut(s)	212, 229, 1228
LmnI	GCTCC	2 cut(s)	4, 1042
Lsp1109I	GCAGC	3 cut(s)	67, 522, 1128
LweI	GCATC	7 cut(s)	36, 67, 181, 487, 716, 853, 1103
MaeI	CTAG	2 cut(s)	144, 1011
MaeII	ACGT	1 cut(s)	1219
MaeIII	GTNAC	5 cut(s)	217, 280, 443, 562, 1139
MalI	GATC	3 cut(s)	214, 231, 1230
MboI	GATC	3 cut(s)	212, 229, 1228
MboII	GAAGA	7 cut(s)	86, 355, 436, 1061, 1095, 1202, 1205
MfeI	CAATTG	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	488
MroNI	GCCGGC	1 cut(s)	383
MroXI	GAANNNNTTC	1 cut(s)	686
MseI	TTAA	5 cut(s)	165, 602, 657, 1128, 1288
MspI	CCGG	3 cut(s)	384, 742, 756
MspR9I	CCNGG	2 cut(s)	742, 756
MunI	CAATTG	1 cut(s)	514
MwoI	GCNNNNNNNGC	1 cut(s)	550
NaeI	GCCGGC	1 cut(s)	385
NciI	CCSGG	2 cut(s)	742, 756
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	3 cut(s)	212, 229, 1228
NgoMIV	GCCGGC	1 cut(s)	383
NheI	GCTAGC	1 cut(s)	1010
NlaIII	CATG	8 cut(s)	109, 128, 176, 544, 570, 826, 1147, 1229
NlaIV	GGNNCC	4 cut(s)	120, 538, 689, 1093
NmuCI	GTSAC	2 cut(s)	280, 562
NspI	RCATGY	2 cut(s)	570, 1147
PagI	TCATGA	2 cut(s)	822, 1225
PciI	ACATGT	2 cut(s)	566, 1143
PdiI	GCCGGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	686
PfeI	GAWTC	8 cut(s)	32, 177, 203, 327, 590, 779, 819, 1066
PkrI	GCNGC	3 cut(s)	82, 512, 1118
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PscI	ACATGT	2 cut(s)	566, 1143
PspEI	GGTNACC	1 cut(s)	217
PspN4I	GGNNCC	4 cut(s)	120, 538, 689, 1093
PspOMI	GGGCCC	1 cut(s)	118
PspPI	GGNCC	4 cut(s)	118, 119, 995, 1092
PstI	CTGCAG	2 cut(s)	190, 512
PstNI	CAGNNNCTG	2 cut(s)	330, 1063
RsaI	GTAC	5 cut(s)	141, 226, 506, 1148, 1249
RsaNI	GTAC	5 cut(s)	140, 225, 505, 1147, 1248
SaqAI	TTAA	5 cut(s)	165, 602, 657, 1128, 1288
SatI	GCNGC	3 cut(s)	81, 511, 1117
Sau3AI	GATC	3 cut(s)	212, 229, 1228
Sau96I	GGNCC	4 cut(s)	118, 119, 995, 1092
ScaI	AGTACT	1 cut(s)	506
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	742, 756
SduI	GDGCHC	1 cut(s)	122
SfaNI	GCATC	7 cut(s)	36, 67, 181, 487, 716, 853, 1103
SfcI	CTRYAG	3 cut(s)	186, 331, 508
SinI	GGWCC	2 cut(s)	995, 1092
SmlI	CTYRAG	1 cut(s)	978
SmoI	CTYRAG	1 cut(s)	978
SspI	AATATT	2 cut(s)	922, 1272
SspMI	CTAG	2 cut(s)	144, 1011
StyD4I	CCNGG	2 cut(s)	740, 754
StyI	CCWWGG	3 cut(s)	105, 143, 306
TaaI	ACNGT	3 cut(s)	449, 618, 1027
TaiI	ACGT	1 cut(s)	1222
TatI	WGTACW	2 cut(s)	504, 1146
TfiI	GAWTC	8 cut(s)	32, 177, 203, 327, 590, 779, 819, 1066
Tru1I	TTAA	5 cut(s)	165, 602, 657, 1128, 1288
Tru9I	TTAA	5 cut(s)	165, 602, 657, 1128, 1288
TscAI	CASTG	3 cut(s)	267, 886, 1030
TseFI	GTSAC	2 cut(s)	280, 562
TseI	GCWGC	3 cut(s)	80, 510, 1116
Tsp45I	GTSAC	2 cut(s)	280, 562
TspDTI	ATGAA	2 cut(s)	603, 683
TspRI	CASTG	3 cut(s)	267, 886, 1030
VpaK11BI	GGWCC	2 cut(s)	995, 1092
XapI	RAATTY	3 cut(s)	745, 838, 1276
XceI	RCATGY	2 cut(s)	570, 1147
XmaJI	CCTAGG	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	686
XspI	CTAG	2 cut(s)	144, 1011
ZrmI	AGTACT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.