Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

27001620 .. 27003113

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGAGGCCTCAAATCCGGCCTCCCGTTCGGACTTCTACGCATATCAGCTGCAAGCAAGCCTCAGAAAGCGAGACTTATTTGCCGGAAAATCAATCCATGCCCAGGTCATCAAATCCGGCCTTCACCTCTGCAGTGTGTTTTTGATGAACAACCTCATGACCGTGTACCTCAAAACCGGCTCTGTTTCCGATGCCCACCGCGTGTTCGACGAAATGCCCCTAAGGAATACGCTCTCATGGAACACTATTCTCTCCGCTTATGCAAAGCAGGGAAGGTTTGACGAAGCACTGAGCGTTTTCAATGCAATGCCGCAACGGGACTCCGTTTCCTGGACCGCAATGATCGTGGGTTACAATCAGATGGGTCGTTACGGGAATGCCATTCAGATGTTTGTGCAGATGATTGCGGACGGAGTTCCGATGACCCAGTTCACCCTTACTAACATTCTTTCCGCATGTGGTGCTGTTAAGGCTTTGGAGATTGGTAGAAAGGTTCATTCGTTTGTTGTTAAACTTGCAGTTGGCGGTTATGTTTCTGTTGCCAACTGTCTTTTAAACATGTATGCAAAATCTGGTGATCCCAGGACCGCGAAGATTGTTTTCGATAGGATGAGGTTGAAAAACACATCGAGCTGGAATGCTATGATTTCTTTGCATATGCAATGCGGTTGTGCTGACCTTGCTCTTGCTCAGTTTAAGCAAATGAAGGAGCGCGACATTGTTTCTTGGAATTCGTTGATTGCAGGATACAATCAGCATGGCCTTGACATGGAAGCACTGACTACCTTCTCATGTATGCTTCAGGGTTCTGTTCTACAGCCCGACAAGTTCACCTTAGCAAGCATTCTGTCAGCTTGTGCTAACCTTGAGAAGTTGGAACTTGGGAAGCAAATCCATGCCCATATTGTAAGAGCTGAGCTGGGCACATATGATGCGGTGAAAAATGCTTTGATCACAATGTATGCTAAATCTGGTGGGTTGGCAATCGCTCAAAGGATTTTAGAGCAATGCGCGACTTCCGATCTCAATGTTATAGCTTTTACCGCCCTATTGCATGGGTACATAAAGCTTGGGGATATAATGCCAGCCAGGCAGATATTTGACTCGTTGAGAGACCGTGATGTGGTTGCATGGACAGCAATGATTGTTGGTTATGTACAGAACGGGTTGAATAATGATGCTTTGGAGCTCTTCATGTCAATGATAAAACAAGGCCCCAAGCCGAACAGCTACACCTTAGCAGCTATGTTAAGTGTCAGTTCGAGCTTGGCTTCTTTAGACTATGGAAAACAAATTCATGCAAGTGCCATGAGGTCGGGGGAAGTGCATTCAGTTTCTGTAAGCAATGCTCTAATTTCAATGTATTCCAAAGCTGGAAGCATCGGTGGTGCAAAGAAAGTATTCAATTTGATTTACTTGAATAGAGATACGGTTTCTTGGACTTCGATCGATCATAGCCCTGGCTCAACATGGTCACGGGGAAGATGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

498

Amino Acids

54.55

Weight (kDa)

9.18

Isoelectric Point (pI)

29.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	76 - 106	3.1e-07	PPR repeat family
PPR	PF01535	79 - 106	2.3e-07	PPR repeat
PPR_2	PF13041	107 - 153	1.3e-06	PPR repeat family
PPR_2	PF13041	373 - 417	1.4e-10	PPR repeat family
PPR	PF01535	376 - 405	5.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	201, 590, 714, 1013
AclWI	GGATC	1 cut(s)	572
AcsI	RAATTY	2 cut(s)	730, 1293
AcuI	CTGAAG	1 cut(s)	785
AdeI	CACNNNGTG	1 cut(s)	202
AfaI	GTAC	3 cut(s)	167, 1061, 1158
AfiI	CCNNNNNNNGG	4 cut(s)	103, 330, 769, 1123
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	6 cut(s)	301, 619, 1171, 1359, 1405, 1420
AjnI	CCWGG	5 cut(s)	102, 329, 581, 1088, 1459
Alw21I	GWGCWC	1 cut(s)	1191
Alw26I	GTCTC	2 cut(s)	66, 1107
AlwI	GGATC	1 cut(s)	572
AlwNI	CAGNNNCTG	1 cut(s)	1337
AoxI	GGCC	5 cut(s)	6, 18, 118, 760, 1213
ApeKI	GCWGC	2 cut(s)	49, 1241
ApoI	RAATTY	2 cut(s)	730, 1293
Asp700I	GAANNNNTTC	1 cut(s)	1400
AspLEI	GCGC	2 cut(s)	714, 1013
AspS9I	GGNCC	3 cut(s)	333, 585, 1214
AsuHPI	GGTGA	5 cut(s)	116, 424, 587, 823, 949
AvaII	GGWCC	2 cut(s)	333, 585
AxyI	CCTNAGG	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	926
BanII	GRGCYC	1 cut(s)	1191
Bbv12I	GWGCWC	1 cut(s)	1191
BbvI	GCAGC	2 cut(s)	36, 1253
BccI	CCATC	1 cut(s)	355
BciT130I	CCWGG	5 cut(s)	104, 331, 583, 1090, 1461
BciVI	GTATCC	1 cut(s)	740
BclI	TGATCA	1 cut(s)	951
BcoDI	GTCTC	2 cut(s)	66, 1107
BfmI	CTRYAG	2 cut(s)	130, 815
BfuI	GTATCC	1 cut(s)	740
BglI	GCCNNNNNGGC	1 cut(s)	1090
BisI	GCNGC	3 cut(s)	50, 311, 1242
BlpI	GCTNAGC	1 cut(s)	915
BlsI	GCNGC	3 cut(s)	51, 312, 1243
Bme1390I	CCNGG	5 cut(s)	104, 331, 583, 1090, 1461
Bme18I	GGWCC	2 cut(s)	333, 585
BmgT120I	GGNCC	3 cut(s)	333, 585, 1214
BmiI	GGNNCC	1 cut(s)	1216
BmrFI	CCNGG	5 cut(s)	104, 331, 583, 1090, 1461
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	5 cut(s)	181, 922, 1168, 1389, 1475
BmuI	ACTGGG	1 cut(s)	421
Bpu10I	CCTNAGC	2 cut(s)	835, 1237
Bpu1102I	GCTNAGC	1 cut(s)	915
BpuEI	CTTGAG	1 cut(s)	887
Bsa29I	ATCGAT	1 cut(s)	1449
BsaI	GGTCTC	1 cut(s)	1107
BsaJI	CCNNGG	3 cut(s)	102, 581, 1459
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 330, 769, 1123
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	427
Bse21I	CCTNAGG	1 cut(s)	221
Bse3DI	GCAATG	6 cut(s)	312, 345, 668, 1013, 1146, 1351
BseBI	CCWGG	5 cut(s)	104, 331, 583, 1090, 1461
BseCI	ATCGAT	1 cut(s)	1449
BseDI	CCNNGG	3 cut(s)	102, 581, 1459
BseGI	GGATG	1 cut(s)	615
BseLI	CCNNNNNNNGG	4 cut(s)	103, 330, 769, 1123
BseMI	GCAATG	6 cut(s)	312, 345, 668, 1013, 1146, 1351
BseMII	CTCAG	4 cut(s)	76, 281, 704, 906
BseNI	ACTGG	1 cut(s)	427
BseSI	GKGCMC	1 cut(s)	926
BseXI	GCAGC	2 cut(s)	36, 1253
BseYI	CCCAGC	1 cut(s)	919
BsgI	GTGCAG	1 cut(s)	416
Bsh1236I	CGCG	4 cut(s)	201, 590, 714, 1013
Bsh1285I	CGRYCG	1 cut(s)	1449
BshFI	GGCC	5 cut(s)	8, 20, 120, 762, 1215
BshVI	ATCGAT	1 cut(s)	1449
BsiEI	CGRYCG	1 cut(s)	1449
BsiHKAI	GWGCWC	1 cut(s)	1191
BsiSI	CCGG	4 cut(s)	17, 84, 117, 177
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	4 cut(s)	103, 330, 769, 1123
BsmAI	GTCTC	2 cut(s)	66, 1107
BsmFI	GGGAC	1 cut(s)	332
BsmI	GAATGC	4 cut(s)	382, 643, 843, 1327
BsnI	GGCC	5 cut(s)	8, 20, 120, 762, 1215
Bso31I	GGTCTC	1 cut(s)	1107
Bsp1286I	GDGCHC	2 cut(s)	926, 1191
Bsp1407I	TGTACA	1 cut(s)	1156
Bsp143I	GATC	6 cut(s)	342, 577, 951, 1021, 1446, 1450
Bsp1720I	GCTNAGC	1 cut(s)	915
BspANI	GGCC	5 cut(s)	8, 20, 120, 762, 1215
BspCNI	CTCAG	4 cut(s)	75, 282, 703, 907
BspDI	ATCGAT	1 cut(s)	1449
BspFNI	CGCG	4 cut(s)	201, 590, 714, 1013
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	1216
BspMAI	CTGCAG	1 cut(s)	134
BspPI	GGATC	1 cut(s)	572
BspQI	GCTCTTC	1 cut(s)	1196
BspTNI	GGTCTC	1 cut(s)	1107
BsrDI	GCAATG	6 cut(s)	312, 345, 668, 1013, 1146, 1351
BsrFI	RCCGGY	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	1156
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	102, 581, 1459
BssMI	GATC	6 cut(s)	342, 577, 951, 1021, 1446, 1450
Bst2UI	CCWGG	5 cut(s)	104, 331, 583, 1090, 1461
Bst4CI	ACNGT	4 cut(s)	163, 548, 1118, 1432
Bst6I	CTCTTC	1 cut(s)	1196
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	1156
BstC8I	GCNNGC	4 cut(s)	54, 58, 841, 1086
BstDEI	CTNAG	7 cut(s)	62, 221, 290, 690, 835, 915, 1237
BstF5I	GGATG	1 cut(s)	615
BstFNI	CGCG	4 cut(s)	201, 590, 714, 1013
BstHHI	GCGC	2 cut(s)	714, 1013
BstKTI	GATC	6 cut(s)	345, 580, 954, 1024, 1449, 1453
BstMAI	GTCTC	2 cut(s)	66, 1107
BstMBI	GATC	6 cut(s)	342, 577, 951, 1021, 1446, 1450
BstMCI	CGRYCG	1 cut(s)	1449
BstMWI	GCNNNNNNNGC	6 cut(s)	461, 470, 680, 1043, 1090, 1136
BstNI	CCWGG	5 cut(s)	104, 331, 583, 1090, 1461
BstNSI	RCATGY	2 cut(s)	459, 562
BstSCI	CCNGG	5 cut(s)	102, 329, 581, 1088, 1459
BstSFI	CTRYAG	2 cut(s)	130, 815
BstSLI	GKGCMC	1 cut(s)	926
BstUI	CGCG	4 cut(s)	201, 590, 714, 1013
BstV1I	GCAGC	2 cut(s)	36, 1253
Bsu15I	ATCGAT	1 cut(s)	1449
Bsu36I	CCTNAGG	1 cut(s)	221
BsuI	GTATCC	1 cut(s)	740
BsuRI	GGCC	5 cut(s)	8, 20, 120, 762, 1215
BsuTUI	ATCGAT	1 cut(s)	1449
BtsCI	GGATG	1 cut(s)	615
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	139, 287, 776
Cac8I	GCNNGC	4 cut(s)	54, 58, 841, 1086
CaiI	CAGNNNCTG	1 cut(s)	1337
CciI	TCATGA	1 cut(s)	156
CfoI	GCGC	2 cut(s)	714, 1013
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	3 cut(s)	333, 585, 1214
ClaI	ATCGAT	1 cut(s)	1449
Csp6I	GTAC	3 cut(s)	166, 1060, 1157
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviQI	GTAC	3 cut(s)	166, 1060, 1157
DdeI	CTNAG	7 cut(s)	62, 221, 290, 690, 835, 915, 1237
DpnI	GATC	6 cut(s)	344, 579, 953, 1023, 1448, 1452
DpnII	GATC	6 cut(s)	342, 577, 951, 1021, 1446, 1450
DraI	TTTAAA	1 cut(s)	555
DraIII	CACNNNGTG	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	1196
EarI	CTCTTC	1 cut(s)	1196
Ecl136II	GAGCTC	1 cut(s)	1189
Eco147I	AGGCCT	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	1191
Eco31I	GGTCTC	1 cut(s)	1107
Eco47I	GGWCC	2 cut(s)	333, 585
Eco53kI	GAGCTC	1 cut(s)	1189
Eco57I	CTGAAG	1 cut(s)	785
Eco81I	CCTNAGG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	1189
EcoO109I	RGGNCCY	1 cut(s)	1214
EcoRI	GAATTC	1 cut(s)	730
EcoRII	CCWGG	5 cut(s)	102, 329, 581, 1088, 1459
EcoT38I	GRGCYC	1 cut(s)	1191
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 818, 850
FaqI	GGGAC	1 cut(s)	332
FauNDI	CATATG	2 cut(s)	657, 928
FbaI	TGATCA	1 cut(s)	951
Fnu4HI	GCNGC	3 cut(s)	50, 311, 1242
FokI	GGATG	1 cut(s)	622
FriOI	GRGCYC	1 cut(s)	1191
Fsp4HI	GCNGC	3 cut(s)	50, 311, 1242
GlaI	GCGC	2 cut(s)	713, 1012
GluI	GCNGC	3 cut(s)	50, 311, 1242
GsaI	CCCAGC	1 cut(s)	923
HaeIII	GGCC	5 cut(s)	8, 20, 120, 762, 1215
HapII	CCGG	4 cut(s)	17, 84, 117, 177
HhaI	GCGC	2 cut(s)	714, 1013
Hin6I	GCGC	2 cut(s)	712, 1011
HinP1I	GCGC	2 cut(s)	712, 1011
HindIII	AAGCTT	1 cut(s)	1067
HinfI	GANTC	2 cut(s)	320, 1103
HpaII	CCGG	4 cut(s)	17, 84, 117, 177
HphI	GGTGA	5 cut(s)	116, 424, 587, 823, 949
Hpy166II	GTNNAC	3 cut(s)	166, 432, 831
Hpy188I	TCNGA	7 cut(s)	31, 65, 190, 360, 387, 420, 1021
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	3 cut(s)	166, 432, 831
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	4 cut(s)	131, 267, 700, 796
HpyCH4III	ACNGT	4 cut(s)	163, 548, 1118, 1432
HpyF10VI	GCNNNNNNNGC	6 cut(s)	461, 470, 680, 1043, 1090, 1136
HpyF3I	CTNAG	7 cut(s)	62, 221, 290, 690, 835, 915, 1237
HspAI	GCGC	2 cut(s)	712, 1011
Ksp22I	TGATCA	1 cut(s)	951
Kzo9I	GATC	6 cut(s)	342, 577, 951, 1021, 1446, 1450
LguI	GCTCTTC	1 cut(s)	1196
LmnI	GCTCC	2 cut(s)	709, 1186
Lsp1109I	GCAGC	2 cut(s)	36, 1253
LweI	GCATC	5 cut(s)	181, 922, 1168, 1389, 1475
MaeIII	GTNAC	3 cut(s)	350, 368, 1473
MalI	GATC	6 cut(s)	344, 579, 953, 1023, 1448, 1452
MboI	GATC	6 cut(s)	342, 577, 951, 1021, 1446, 1450
MboII	GAAGA	3 cut(s)	604, 1183, 1494
MhlI	GDGCHC	2 cut(s)	926, 1191
MluCI	AATT	4 cut(s)	730, 1293, 1353, 1405
MlyI	GAGTC	2 cut(s)	314, 1097
MmeI	TCCRAC	1 cut(s)	855
MnlI	CCTC	8 cut(s)	19, 31, 71, 137, 164, 179, 606, 1305
MroXI	GAANNNNTTC	1 cut(s)	1400
MseI	TTAA	5 cut(s)	468, 510, 554, 696, 1250
MslI	CAYNNNNRTG	4 cut(s)	161, 386, 1199, 1302
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	4 cut(s)	17, 84, 117, 177
MspR9I	CCNGG	5 cut(s)	104, 331, 583, 1090, 1461
Mva1269I	GAATGC	4 cut(s)	382, 643, 843, 1327
MvaI	CCWGG	5 cut(s)	104, 331, 583, 1090, 1461
MvnI	CGCG	4 cut(s)	201, 590, 714, 1013
MwoI	GCNNNNNNNGC	6 cut(s)	461, 470, 680, 1043, 1090, 1136
NdeI	CATATG	2 cut(s)	657, 928
NdeII	GATC	6 cut(s)	342, 577, 951, 1021, 1446, 1450
NlaIV	GGNNCC	1 cut(s)	1216
NmuCI	GTSAC	1 cut(s)	1473
NspI	RCATGY	2 cut(s)	459, 562
PagI	TCATGA	1 cut(s)	156
PceI	AGGCCT	1 cut(s)	8
PciI	ACATGT	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	1196
PctI	GAATGC	4 cut(s)	382, 643, 843, 1327
PdmI	GAANNNNTTC	1 cut(s)	1400
PfoI	TCCNGGA	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	51, 312, 1243
Ple19I	CGATCG	1 cut(s)	1449
PleI	GAGTC	2 cut(s)	314, 1097
PpsI	GAGTC	2 cut(s)	314, 1097
PscI	ACATGT	1 cut(s)	558
Psp124BI	GAGCTC	1 cut(s)	1191
Psp6I	CCWGG	5 cut(s)	102, 329, 581, 1088, 1459
PspFI	CCCAGC	1 cut(s)	919
PspGI	CCWGG	5 cut(s)	102, 329, 581, 1088, 1459
PspN4I	GGNNCC	1 cut(s)	1216
PspPI	GGNCC	3 cut(s)	333, 585, 1214
PstI	CTGCAG	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	1337
PvuI	CGATCG	1 cut(s)	1449
PvuII	CAGCTG	1 cut(s)	49
RsaI	GTAC	3 cut(s)	167, 1061, 1158
RsaNI	GTAC	3 cut(s)	166, 1060, 1157
RseI	CAYNNNNRTG	4 cut(s)	161, 386, 1199, 1302
SacI	GAGCTC	1 cut(s)	1191
SapI	GCTCTTC	1 cut(s)	1196
SaqAI	TTAA	5 cut(s)	468, 510, 554, 696, 1250
SatI	GCNGC	3 cut(s)	50, 311, 1242
Sau3AI	GATC	6 cut(s)	342, 577, 951, 1021, 1446, 1450
Sau96I	GGNCC	3 cut(s)	333, 585, 1214
SchI	GAGTC	2 cut(s)	314, 1097
ScrFI	CCNGG	5 cut(s)	104, 331, 583, 1090, 1461
SduI	GDGCHC	2 cut(s)	926, 1191
SfaNI	GCATC	5 cut(s)	181, 922, 1168, 1389, 1475
SfcI	CTRYAG	2 cut(s)	130, 815
SinI	GGWCC	2 cut(s)	333, 585
SmiMI	CAYNNNNRTG	4 cut(s)	161, 386, 1199, 1302
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
Sse9I	AATT	4 cut(s)	730, 1293, 1353, 1405
SseBI	AGGCCT	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	1191
StuI	AGGCCT	1 cut(s)	8
StyD4I	CCNGG	5 cut(s)	102, 329, 581, 1088, 1459
TaaI	ACNGT	4 cut(s)	163, 548, 1118, 1432
TaqI	TCGA	6 cut(s)	207, 603, 629, 1262, 1445, 1449
TasI	AATT	4 cut(s)	730, 1293, 1353, 1405
TatI	WGTACW	1 cut(s)	1156
TauI	GCSGC	1 cut(s)	313
Tru1I	TTAA	5 cut(s)	468, 510, 554, 696, 1250
Tru9I	TTAA	5 cut(s)	468, 510, 554, 696, 1250
TscAI	CASTG	3 cut(s)	139, 294, 783
TseFI	GTSAC	1 cut(s)	1473
TseI	GCWGC	2 cut(s)	49, 1241
Tsp45I	GTSAC	1 cut(s)	1473
TspDTI	ATGAA	5 cut(s)	161, 485, 719, 1183, 1286
TspGWI	ACGGA	2 cut(s)	313, 426
TspRI	CASTG	3 cut(s)	139, 294, 783
VpaK11BI	GGWCC	2 cut(s)	333, 585
XapI	RAATTY	2 cut(s)	730, 1293
XceI	RCATGY	2 cut(s)	459, 562
XmnI	GAANNNNTTC	1 cut(s)	1400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.