Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

28042946 .. 28045170

Gene Structure 2225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGATCCTTACAGGCACCGCCCTTCAAGTGCTTTCAATTCTCTGTTCTGGACCACAAATTCCGGTGCTCCGGCTTGGAACAACTCCTCTCTGACTGTTGGATCCAGAGGTCCACTTCTGCTTGAGGACTACCATCTTGTGGAGAAACTTGCGAACTGTGGAGAACAAATCCCAGAACGTGTTGTCCATGCTAGGGGAGCTAGTGCAAAAAGTTTCTTCAAGGTCACCCATCGATCTATCTCACCTTTCATGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004096 GO:0004601 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009314 GO:0009409 GO:0009410 GO:0009416 GO:0009628 GO:0009631 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0020037 GO:0022607 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0051187 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051290 GO:0051291 GO:0051716 GO:0055114 GO:0065003 GO:0070887 GO:0071840 GO:0072593 GO:0097159 GO:0097237 GO:0097305 GO:0098754 GO:0098869 GO:1901363 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00380 ko00630 ko01110 ko01130 ko01200 ko04011 ko04016 ko04068 ko04146 ko04211 ko04212 ko04213 ko05014 map00380 map00630 map01110 map01130 map01200 map04011 map04016 map04068 map04146 map04211 map04212 map04213 map05014

Pfam Domains

Protein Families

Catalase Catalase-rel

Protein Analysis

86

Amino Acids

9.48

Weight (kDa)

9.24

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Catalase	PF00199	18 - 78	4.6e-16	Catalase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	15
AccB7I	CCANNNNNTGG	1 cut(s)	139
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	3 cut(s)	12, 96, 109
AcsI	RAATTY	1 cut(s)	58
AfiI	CCNNNNNNNGG	2 cut(s)	139, 193
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	27, 37, 220
AloI	GAACNNNNNNTCC	2 cut(s)	168, 200
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
Alw21I	GWGCWC	1 cut(s)	70
AlwI	GGATC	3 cut(s)	12, 96, 109
ApoI	RAATTY	1 cut(s)	58
AspS9I	GGNCC	2 cut(s)	51, 110
AsuHPI	GGTGA	2 cut(s)	217, 234
AvaII	GGWCC	2 cut(s)	51, 110
BamHI	GGATCC	2 cut(s)	4, 101
BanI	GGYRCC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	2 cut(s)	141, 237
BfaI	CTAG	2 cut(s)	192, 201
Bme18I	GGWCC	2 cut(s)	51, 110
BmgT120I	GGNCC	2 cut(s)	51, 110
BmiI	GGNNCC	3 cut(s)	6, 17, 103
BpuEI	CTTGAG	1 cut(s)	143
Bsa29I	ATCGAT	1 cut(s)	232
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 193
BseCI	ATCGAT	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	139, 193
BseRI	GAGGAG	1 cut(s)	76
BshNI	GGYRCC	1 cut(s)	15
BshVI	ATCGAT	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	63, 71
BslI	CCNNNNNNNGG	2 cut(s)	139, 193
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	4, 101, 233
BspACI	CCGC	1 cut(s)	19
BspDI	ATCGAT	1 cut(s)	232
BspLI	GGNNCC	3 cut(s)	6, 17, 103
BspPI	GGATC	3 cut(s)	12, 96, 109
BspT107I	GGYRCC	1 cut(s)	15
BssMI	GATC	3 cut(s)	4, 101, 233
Bst4CI	ACNGT	2 cut(s)	97, 158
BstEII	GGTNACC	1 cut(s)	223
BstKTI	GATC	3 cut(s)	7, 104, 236
BstMBI	GATC	3 cut(s)	4, 101, 233
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstPI	GGTNACC	1 cut(s)	223
BstX2I	RGATCY	2 cut(s)	4, 101
BstYI	RGATCY	2 cut(s)	4, 101
Bsu15I	ATCGAT	1 cut(s)	232
BsuTUI	ATCGAT	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	51, 110
ClaI	ATCGAT	1 cut(s)	232
CviAII	CATG	2 cut(s)	188, 250
CviJI	RGCY	2 cut(s)	74, 200
CviKI_1	RGCY	2 cut(s)	74, 200
DpnI	GATC	3 cut(s)	6, 103, 235
DpnII	GATC	3 cut(s)	4, 101, 233
Eco47I	GGWCC	2 cut(s)	51, 110
Eco91I	GGTNACC	1 cut(s)	223
EcoO65I	GGTNACC	1 cut(s)	223
FaeI	CATG	2 cut(s)	191, 253
FaiI	YATR	2 cut(s)	189, 251
FatI	CATG	2 cut(s)	187, 249
FspBI	CTAG	2 cut(s)	192, 201
HapII	CCGG	2 cut(s)	63, 71
Hin1II	CATG	2 cut(s)	191, 253
HpaII	CCGG	2 cut(s)	63, 71
HphI	GGTGA	2 cut(s)	217, 234
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	49, 105
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	2 cut(s)	97, 158
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	191, 253
Kzo9I	GATC	3 cut(s)	4, 101, 233
LmnI	GCTCC	2 cut(s)	73, 197
LpnPI	CCDG	5 cut(s)	34, 76, 84, 118, 186
MaeI	CTAG	2 cut(s)	192, 201
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	6, 103, 235
MboI	GATC	3 cut(s)	4, 101, 233
MboII	GAAGA	1 cut(s)	208
MflI	RGATCY	2 cut(s)	4, 101
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	37, 58
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	3 cut(s)	97, 101, 118
MspI	CCGG	2 cut(s)	63, 71
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	3 cut(s)	4, 101, 233
NlaIII	CATG	2 cut(s)	191, 253
NlaIV	GGNNCC	3 cut(s)	6, 17, 103
NmuCI	GTSAC	1 cut(s)	223
PflMI	CCANNNNNTGG	1 cut(s)	139
PspEI	GGTNACC	1 cut(s)	223
PspN4I	GGNNCC	3 cut(s)	6, 17, 103
PspPI	GGNCC	2 cut(s)	51, 110
PsuI	RGATCY	2 cut(s)	4, 101
Sau3AI	GATC	3 cut(s)	4, 101, 233
Sau96I	GGNCC	2 cut(s)	51, 110
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	5 cut(s)	112, 181, 202, 225, 247
SinI	GGWCC	2 cut(s)	51, 110
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	37, 58
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	2 cut(s)	192, 201
TaaI	ACNGT	2 cut(s)	97, 158
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	232
TasI	AATT	2 cut(s)	37, 58
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	2 cut(s)	51, 110
XapI	RAATTY	1 cut(s)	58
XspI	CTAG	2 cut(s)	192, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.