pycom16g25990

Transport and Golgi organization 2 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
N/A
Physical Location & Seq
Forward (+)
28226848 .. 28227367
520 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
ATGCGTATAGCAGTGTTCCTTTGGCAAGCCCACCCACTTTACCCTTTCCTTCTCTTGCAAAACAGAGATGAATATCACAACAGTGGCATGGTGGGAAGGCTGCAAGATATAGGCAGAAGAGATGAGTTTGCAAGAGGGACATGGTTGGCCTGTTCAAGAGGAGGGAGACTGGCTTTTCTTACAAATGTACTTGAGCTTCACACTGACCCAGACACCGACCCAGAGGCAAAGAGCCGAGAAGACCTACCTGTGCTCACATTAAAATTATGTTTGAGAGCTTTCATCCGATCTTTCAAGTGGCTCTCCAATATTTTTTTTTCCTGCAGTTCTCTCACTATGTTGTCAAAAACAACAGTTGAAAGTACTCTTTGTCCCATACTTTTTATGCATAAATGTCTCAATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.59

Weight (kDa)

8.71

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TANGO2 PF05742 1 - 87 5.7e-17 Transport and Golgi organisation 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 189, 364
AgsI TTSAA 3 cut(s) 156, 295, 359
AleI CACNNNNGTG 1 cut(s) 81
AluBI AGCT 2 cut(s) 196, 278
AluI AGCT 2 cut(s) 196, 278
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 160, 401
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 100
BarI GAAGNNNNNNTAC 2 cut(s) 180, 212
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 160, 401
BfmI CTRYAG 1 cut(s) 322
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
BmcAI AGTACT 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 72
BseGI GGATG 1 cut(s) 282
BseJI GATNNNNATC 1 cut(s) 72
BseNI ACTGG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 87
BshFI GGCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 255
BslFI GGGAC 2 cut(s) 151, 357
BsmAI GTCTC 2 cut(s) 160, 401
BsmFI GGGAC 2 cut(s) 151, 357
BsnI GGCC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 287
BspANI GGCC 1 cut(s) 149
BspMAI CTGCAG 1 cut(s) 326
BsrI ACTGG 1 cut(s) 174
BssMI GATC 1 cut(s) 287
Bst4CI ACNGT 2 cut(s) 83, 355
Bst6I CTCTTC 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 27
BstF5I GGATG 1 cut(s) 282
BstKTI GATC 1 cut(s) 290
BstMAI GTCTC 2 cut(s) 160, 401
BstMBI GATC 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 87
BstV2I GAAGAC 1 cut(s) 246
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 3 cut(s) 18, 88, 201
Cac8I GCNNGC 1 cut(s) 27
Csp6I GTAC 2 cut(s) 188, 363
CviAII CATG 2 cut(s) 88, 141
CviJI RGCY 8 cut(s) 29, 100, 149, 173, 196, 234, 278, 301
CviKI_1 RGCY 8 cut(s) 29, 100, 149, 173, 196, 234, 278, 301
CviQI GTAC 2 cut(s) 188, 363
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 390
FaeI CATG 2 cut(s) 91, 144
FaiI YATR 9 cut(s) 8, 89, 110, 142, 268, 338, 377, 386, 390
FaqI GGGAC 2 cut(s) 151, 357
FatI CATG 2 cut(s) 87, 140
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 101
HaeIII GGCC 1 cut(s) 149
Hin1II CATG 2 cut(s) 91, 144
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 59, 90
HpyCH4III ACNGT 2 cut(s) 83, 355
HpyCH4V TGCA 5 cut(s) 58, 103, 131, 324, 388
Hsp92II CATG 2 cut(s) 91, 144
Kzo9I GATC 1 cut(s) 287
LpnPI CCDG 6 cut(s) 155, 163, 222, 234, 261, 334
Lsp1109I GCAGC 1 cut(s) 87
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 2 cut(s) 129, 251
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 1 cut(s) 263
MnlI CCTC 4 cut(s) 128, 152, 155, 217
Mph1103I ATGCAT 1 cut(s) 390
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 81
NdeII GATC 1 cut(s) 287
NlaIII CATG 2 cut(s) 91, 144
NmeAIII GCCGAG 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 390
OliI CACNNNNGTG 1 cut(s) 81
PkrI GCNGC 1 cut(s) 102
PstI CTGCAG 1 cut(s) 326
RsaI GTAC 2 cut(s) 189, 364
RsaNI GTAC 2 cut(s) 188, 363
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 1 cut(s) 287
ScaI AGTACT 1 cut(s) 364
SduI GDGCHC 1 cut(s) 255
SetI ASST 4 cut(s) 198, 246, 250, 280
SfcI CTRYAG 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 1 cut(s) 263
SspI AATATT 1 cut(s) 310
TaaI ACNGT 2 cut(s) 83, 355
TasI AATT 1 cut(s) 263
TatI WGTACW 2 cut(s) 187, 362
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 3 cut(s) 18, 88, 208
TseI GCWGC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 84, 271
TspRI CASTG 3 cut(s) 18, 88, 208
ZrmI AGTACT 1 cut(s) 364
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.