Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

28406009 .. 28408277

Gene Structure 2269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTTGGTGGTTGGAGAACTGCTTTTACCATCGGGTATGGCTTGCCACTTCATGATTTTCTGTTTGAATCAGATGGACAACGTGTCCTTAATATCACTTTTGGTTGCCCCGTGAATGAGGTGGTCATTGACACCCTCATTGTGAAGGTTGTTCTACCCGAGGGTTCCAGAGATATATCTGTATCTGCTCCATTTCCTCTGAAACAAGGGCGAGAGACAAAATTTTCCCACTTGGATCTTGTTGGAAGGCCAGTGGTTGTACTGGAAAAGACTAATGCTGTGCCCGAGCATAATCAGAAATTCCAGGTCTTTTACAAATTCAACAGCCTGGCAATGCTGACCGAGCCCTTGATGTTGATTTCTGGATTTTTCTTCCTTTTCGTTGCTGGCATTGTATACATGCATGTGGACATGTCAATCTCCAAATCTTCTCCATCTTATTTGGCCAAACTGCAGTGGGATGAAGTGCAAGCAGCAATTCAGAAGATCCAAAATATCATCAACCGATGCCTCCTGATACATGATAAGCTGGAAGCATCATTACGTGATCTTTCACGGACAGGAGATGTCCAAGCTTGTAAAGCAGCTAGGAAAGCAGCTGATGGTTCGTTGAAAGAGCTTTCAAAAGAGATGAAGCCCTTGTTGGCATTCTTGCAATCTTCTCAGCAGGCTGCTCATATACTGCCCAAGGTGGAGGAGCTAGTGGTGAAGGAGAAAGATTTAGAAGAAAGGTTAATGGTTAAACACTCTACAGTTGTGGATTGCTATGAGAAGAAGTATGGCGGAAGAGAAATCGAGAACCGGGTTGCTTCACATCTGCAAAAAATTACTGCCTTGAGGCAGGAGGTTGACGATCTTCTTGAGTTTATTGACGAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004576 GO:0004579 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Ribophorin_I

Protein Analysis

294

Amino Acids

33.09

Weight (kDa)

6.26

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribophorin_I	PF04597	1 - 133	8.1e-44	Ribophorin I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	396
AciI	CCGC	1 cut(s)	783
AclWI	GGATC	2 cut(s)	243, 481
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	3 cut(s)	221, 299, 317
AfaI	GTAC	1 cut(s)	261
AflIII	ACRYGT	2 cut(s)	82, 411
AgsI	TTSAA	4 cut(s)	68, 322, 613, 624
AhdI	GACNNNNNGTC	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	303, 327
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AluBI	AGCT	6 cut(s)	529, 575, 587, 599, 619, 700
AluI	AGCT	6 cut(s)	529, 575, 587, 599, 619, 700
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	2 cut(s)	243, 481
Ama87I	CYCGRG	2 cut(s)	158, 284
AoxI	GGCC	2 cut(s)	248, 444
ApeKI	GCWGC	4 cut(s)	473, 584, 596, 671
ApoI	RAATTY	3 cut(s)	221, 299, 317
AsuC2I	CCSGG	1 cut(s)	803
AsuHPI	GGTGA	1 cut(s)	718
AvaI	CYCGRG	2 cut(s)	158, 284
BaeGI	GKGCMC	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	348
BarI	GAAGNNNNNNTAC	2 cut(s)	525, 557
BbvI	GCAGC	4 cut(s)	485, 596, 608, 658
BccI	CCATC	4 cut(s)	38, 68, 442, 596
BciT130I	CCWGG	2 cut(s)	305, 329
BcnI	CCSGG	1 cut(s)	803
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	588, 701
BfmI	CTRYAG	2 cut(s)	452, 750
BisI	GCNGC	4 cut(s)	474, 585, 597, 672
BlsI	GCNGC	4 cut(s)	475, 586, 598, 673
Bme1390I	CCNGG	3 cut(s)	305, 329, 803
BmeRI	GACNNNNNGTC	1 cut(s)	83
BmeT110I	CYCGRG	2 cut(s)	158, 284
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	3 cut(s)	305, 329, 803
BmsI	GCATC	2 cut(s)	497, 545
BpuEI	CTTGAG	2 cut(s)	856, 881
BpuMI	CCSGG	1 cut(s)	803
BsaAI	YACGTR	1 cut(s)	545
BsaJI	CCNNGG	2 cut(s)	159, 687
Bse1I	ACTGG	2 cut(s)	251, 267
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	305, 329
BseDI	CCNNGG	2 cut(s)	159, 687
BseGI	GGATG	1 cut(s)	466
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	677
BseNI	ACTGG	2 cut(s)	251, 267
BseRI	GAGGAG	1 cut(s)	710
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	4 cut(s)	485, 596, 608, 658
BshFI	GGCC	2 cut(s)	250, 446
BsiHKCI	CYCGRG	2 cut(s)	158, 284
BsiSI	CCGG	1 cut(s)	802
BsmAI	GTCTC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	2 cut(s)	250, 446
BsoBI	CYCGRG	2 cut(s)	158, 284
Bsp1286I	GDGCHC	2 cut(s)	285, 348
Bsp143I	GATC	4 cut(s)	235, 486, 547, 853
BspACI	CCGC	1 cut(s)	783
BspANI	GGCC	2 cut(s)	250, 446
BspCNI	CTCAG	1 cut(s)	676
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	456
BspPI	GGATC	2 cut(s)	243, 481
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	251, 267
BssECI	CCNNGG	2 cut(s)	159, 687
BssMI	GATC	4 cut(s)	235, 486, 547, 853
BssNAI	GTATAC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	687
Bst1107I	GTATAC	1 cut(s)	397
Bst2UI	CCWGG	2 cut(s)	305, 329
Bst4CI	ACNGT	1 cut(s)	754
Bst6I	CTCTTC	1 cut(s)	781
BstBAI	YACGTR	1 cut(s)	545
BstC8I	GCNNGC	4 cut(s)	44, 388, 471, 669
BstDEI	CTNAG	1 cut(s)	663
BstF5I	GGATG	1 cut(s)	466
BstKTI	GATC	4 cut(s)	238, 489, 550, 856
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	4 cut(s)	235, 486, 547, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	343, 581, 593
BstNI	CCWGG	2 cut(s)	305, 329
BstNSI	RCATGY	3 cut(s)	403, 407, 415
BstSCI	CCNGG	3 cut(s)	303, 327, 801
BstSFI	CTRYAG	2 cut(s)	452, 750
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	4 cut(s)	485, 596, 608, 658
BstX2I	RGATCY	2 cut(s)	235, 486
BstYI	RGATCY	2 cut(s)	235, 486
BstZ17I	GTATAC	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	250, 446
BtsCI	GGATG	1 cut(s)	466
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	2 cut(s)	258, 461
Cac8I	GCNNGC	4 cut(s)	44, 388, 471, 669
CciI	TCATGA	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	5 cut(s)	53, 400, 404, 412, 521
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	1 cut(s)	663
DpnI	GATC	4 cut(s)	237, 488, 549, 855
DpnII	GATC	4 cut(s)	235, 486, 547, 853
DriI	GACNNNNNGTC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	444
Eam1104I	CTCTTC	1 cut(s)	781
Eam1105I	GACNNNNNGTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	781
EciI	GGCGGA	1 cut(s)	798
Eco130I	CCWWGG	1 cut(s)	687
Eco24I	GRGCYC	1 cut(s)	348
Eco88I	CYCGRG	2 cut(s)	158, 284
EcoRII	CCWGG	2 cut(s)	303, 327
EcoT14I	CCWWGG	1 cut(s)	687
EcoT22I	ATGCAT	1 cut(s)	405
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	687
FaeI	CATG	5 cut(s)	56, 403, 407, 415, 524
FatI	CATG	5 cut(s)	52, 399, 403, 411, 520
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	4 cut(s)	474, 585, 597, 672
FokI	GGATG	1 cut(s)	473
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	4 cut(s)	474, 585, 597, 672
FspBI	CTAG	2 cut(s)	588, 701
GluI	GCNGC	4 cut(s)	474, 585, 597, 672
HaeIII	GGCC	2 cut(s)	250, 446
HapII	CCGG	1 cut(s)	802
Hin1II	CATG	5 cut(s)	56, 403, 407, 415, 524
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HindIII	AAGCTT	1 cut(s)	573
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	802
HphI	GGTGA	1 cut(s)	718
Hpy166II	GTNNAC	3 cut(s)	397, 409, 850
Hpy188I	TCNGA	4 cut(s)	73, 201, 297, 483
Hpy188III	TCNNGA	6 cut(s)	53, 168, 363, 514, 796, 860
Hpy8I	GTNNAC	3 cut(s)	397, 409, 850
HpyAV	CCTTC	3 cut(s)	139, 240, 703
HpyCH4III	ACNGT	1 cut(s)	754
HpyCH4IV	ACGT	2 cut(s)	82, 544
HpyCH4V	TGCA	5 cut(s)	403, 454, 469, 655, 820
HpyF10VI	GCNNNNNNNGC	3 cut(s)	343, 581, 593
HpyF3I	CTNAG	1 cut(s)	663
HpySE526I	ACGT	2 cut(s)	82, 544
Hsp92II	CATG	5 cut(s)	56, 403, 407, 415, 524
Kzo9I	GATC	4 cut(s)	235, 486, 547, 853
LmnI	GCTCC	2 cut(s)	193, 697
Lsp1109I	GCAGC	4 cut(s)	485, 596, 608, 658
LweI	GCATC	2 cut(s)	497, 545
MaeI	CTAG	2 cut(s)	588, 701
MaeII	ACGT	2 cut(s)	82, 544
MalI	GATC	4 cut(s)	237, 488, 549, 855
MboI	GATC	4 cut(s)	235, 486, 547, 853
MboII	GAAGA	8 cut(s)	364, 420, 496, 651, 737, 784, 798, 848
MflI	RGATCY	2 cut(s)	235, 486
MhlI	GDGCHC	2 cut(s)	285, 348
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	5 cut(s)	221, 299, 317, 477, 825
MluNI	TGGCCA	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	8 cut(s)	112, 146, 154, 207, 521, 688, 831, 838
Mox20I	TGGCCA	1 cut(s)	446
Mph1103I	ATGCAT	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	3 cut(s)	90, 734, 741
MslI	CAYNNNNRTG	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	1 cut(s)	802
MspR9I	CCNGG	3 cut(s)	305, 329, 803
Mva1269I	GAATGC	1 cut(s)	647
MvaI	CCWGG	2 cut(s)	305, 329
MwoI	GCNNNNNNNGC	3 cut(s)	343, 581, 593
NciI	CCSGG	1 cut(s)	803
NdeII	GATC	4 cut(s)	235, 486, 547, 853
NlaIII	CATG	5 cut(s)	56, 403, 407, 415, 524
NlaIV	GGNNCC	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	405
NspI	RCATGY	3 cut(s)	403, 407, 415
PagI	TCATGA	1 cut(s)	52
PciI	ACATGT	1 cut(s)	411
PctI	GAATGC	1 cut(s)	647
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	4 cut(s)	475, 586, 598, 673
Ppu21I	YACGTR	1 cut(s)	545
PscI	ACATGT	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	303, 327
PspGI	CCWGG	2 cut(s)	303, 327
PspN4I	GGNNCC	1 cut(s)	166
PsrI	GAACNNNNNNTAC	2 cut(s)	10, 42
PstI	CTGCAG	1 cut(s)	456
PsuI	RGATCY	2 cut(s)	235, 486
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	90, 734, 741
SatI	GCNGC	4 cut(s)	474, 585, 597, 672
Sau3AI	GATC	4 cut(s)	235, 486, 547, 853
ScrFI	CCNGG	3 cut(s)	305, 329, 803
SduI	GDGCHC	2 cut(s)	285, 348
SfaNI	GCATC	2 cut(s)	497, 545
SfcI	CTRYAG	2 cut(s)	452, 750
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	2 cut(s)	835, 860
SmoI	CTYRAG	2 cut(s)	835, 860
Sse9I	AATT	5 cut(s)	221, 299, 317, 477, 825
SsiI	CCGC	1 cut(s)	783
SspMI	CTAG	2 cut(s)	588, 701
StyD4I	CCNGG	3 cut(s)	303, 327, 801
StyI	CCWWGG	1 cut(s)	687
TaaI	ACNGT	1 cut(s)	754
TaiI	ACGT	2 cut(s)	85, 547
TaqI	TCGA	1 cut(s)	795
TaqII	GACCGA	1 cut(s)	356
TasI	AATT	5 cut(s)	221, 299, 317, 477, 825
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	3 cut(s)	90, 734, 741
Tru9I	TTAA	3 cut(s)	90, 734, 741
TscAI	CASTG	2 cut(s)	258, 461
TseI	GCWGC	4 cut(s)	473, 584, 596, 671
TspDTI	ATGAA	3 cut(s)	41, 477, 647
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	2 cut(s)	258, 461
XapI	RAATTY	3 cut(s)	221, 299, 317
XceI	RCATGY	3 cut(s)	403, 407, 415
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	2 cut(s)	588, 701
Zsp2I	ATGCAT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.