Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

526754 .. 527152

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCGTGCATGCAAAGTTTTTCCTGAGCTTGGCCAACACGTCGACCTCGACCTCGACCCGCCTTTCACGAAGGATCTACCGCGACTCGAGGTGACCAATTTTTACTACACGTTGGAGGACATATTGTTCGAGGAGGTCGAGAAAAAAATTGGGCCTGATTGTTTATCATTTATCTTCGACCATGGGTTGTTCTTTGGTCAAAAGAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

71

Amino Acids

8.19

Weight (kDa)

4.77

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	82
AciI	CCGC	2 cut(s)	59, 80
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	29
AflIII	ACRYGT	2 cut(s)	37, 108
AjiI	CACGTC	1 cut(s)	40
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
AlwI	GGATC	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	31, 152
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	33
BmeT110I	CYCGRG	1 cut(s)	86
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	33, 154
BsiHKCI	CYCGRG	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	29
BsnI	GGCC	2 cut(s)	33, 154
BsoBI	CYCGRG	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	73
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	2 cut(s)	59, 80
BspANI	GGCC	2 cut(s)	33, 154
BspCNI	CTCAG	1 cut(s)	16
BspFNI	CGCG	1 cut(s)	82
BspPI	GGATC	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	6, 10
BstDEI	CTNAG	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	181
BstEII	GGTNACC	1 cut(s)	91
BstFNI	CGCG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstNSI	RCATGY	1 cut(s)	12
BstPI	GGTNACC	1 cut(s)	91
BstUI	CGCG	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	33, 154
BtgI	CCRYGG	1 cut(s)	181
BtrI	CACGTC	1 cut(s)	40
Cac8I	GCNNGC	2 cut(s)	6, 10
Cfr13I	GGNCC	1 cut(s)	152
CviAII	CATG	3 cut(s)	9, 182, 210
CviJI	RGCY	4 cut(s)	28, 33, 154, 208
CviKI_1	RGCY	4 cut(s)	28, 33, 154, 208
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	86
Eco91I	GGTNACC	1 cut(s)	91
EcoO65I	GGTNACC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	3 cut(s)	12, 185, 213
FaiI	YATR	4 cut(s)	10, 122, 183, 211
FatI	CATG	3 cut(s)	8, 181, 209
FauI	CCCGC	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	33, 154
Hin1II	CATG	3 cut(s)	12, 185, 213
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	84
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188III	TCNNGA	3 cut(s)	23, 67, 139
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	64
HpyCH4IV	ACGT	2 cut(s)	39, 110
HpyCH4V	TGCA	2 cut(s)	8, 12
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	2 cut(s)	39, 110
Hsp92II	CATG	3 cut(s)	12, 185, 213
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	2 cut(s)	36, 168
MaeII	ACGT	2 cut(s)	39, 110
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	166
MflI	RGATCY	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	2 cut(s)	97, 147
MluNI	TGGCCA	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	6 cut(s)	56, 62, 82, 109, 124, 127
Mox20I	TGGCCA	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	33
MvnI	CGCG	1 cut(s)	82
NcoI	CCATGG	1 cut(s)	181
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	3 cut(s)	12, 185, 213
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	12
PaeI	GCATGC	1 cut(s)	12
PaeR7I	CTCGAG	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 135
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
PspEI	GGTNACC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	152
PspXI	VCTCGAGB	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	73
SalI	GTCGAC	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	78
SetI	ASST	7 cut(s)	30, 42, 48, 54, 93, 113, 138
Sfr274I	CTCGAG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SphI	GCATGC	1 cut(s)	12
Sse9I	AATT	2 cut(s)	97, 147
SsiI	CCGC	2 cut(s)	59, 80
StyI	CCWWGG	1 cut(s)	181
TaiI	ACGT	2 cut(s)	42, 113
TaqI	TCGA	7 cut(s)	42, 48, 54, 87, 129, 138, 177
TasI	AATT	2 cut(s)	97, 147
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
XceI	RCATGY	1 cut(s)	12
XhoI	CTCGAG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.