pycom17g01020

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Reverse (-)
722681 .. 722960
280 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGCCAGATAGAACAATCATACTGACGATTGTTGAGGAAGCATGGACTGGTTCTGGCTCCGTCCTCGATCTCTTCCTCGAGAGCTTTCGGGTTGGCCAAGGGACGAAAGGTACTGCAAGTCCGTGCATCCCCATTGCTTCAAGCTTGCGCCACTACGATTGTCGAAACCTGCTGCTGGAAAGCAAGTTCTCGGTCACGGTCGGGAGGGAATCGACCTGCTACATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

77

Amino Acids

8.37

Weight (kDa)

5.27

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 177, 224
AcoI YGGCCR 1 cut(s) 94
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 1 cut(s) 141
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 2 cut(s) 84, 144
AluI AGCT 2 cut(s) 84, 144
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 172
AspLEI GCGC 1 cut(s) 150
AvaI CYCGRG 1 cut(s) 77
BalI TGGCCA 1 cut(s) 96
BbvI GCAGC 1 cut(s) 159
BfuAI ACCTGC 2 cut(s) 177, 224
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 58
BmsI GCATC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 52
BseXI GCAGC 1 cut(s) 159
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 77
Bsp143I GATC 1 cut(s) 67
BspANI GGCC 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 58
BspMI ACCTGC 2 cut(s) 177, 224
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 146
BstF5I GGATG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstMCI CGRYCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 1 cut(s) 126
BveI ACCTGC 2 cut(s) 177, 224
Cac8I GCNNGC 1 cut(s) 146
CfoI GCGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 111
CspCI CAANNNNNGTGG 2 cut(s) 140, 175
CviAII CATG 1 cut(s) 42
CviJI RGCY 4 cut(s) 57, 84, 96, 144
CviKI_1 RGCY 4 cut(s) 57, 84, 96, 144
CviQI GTAC 1 cut(s) 111
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 1 cut(s) 45
FaiI YATR 3 cut(s) 20, 43, 224
FaqI GGGAC 1 cut(s) 115
FatI CATG 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 173
GlaI GCGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 173
HaeIII GGCC 1 cut(s) 96
HhaI GCGC 1 cut(s) 150
Hin1II CATG 1 cut(s) 45
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 1 cut(s) 209
Hpy188III TCNNGA 2 cut(s) 79, 202
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 116, 126
Hsp92II CATG 1 cut(s) 45
HspAI GCGC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 5 cut(s) 18, 33, 39, 161, 182
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 64
MlsI TGGCCA 1 cut(s) 96
MluNI TGGCCA 1 cut(s) 96
MnlI CCTC 4 cut(s) 28, 74, 86, 198
Mox20I TGGCCA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 96
NdeII GATC 1 cut(s) 67
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 77
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 58
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 1 cut(s) 67
SetI ASST 5 cut(s) 86, 112, 146, 171, 218
SfaNI GCATC 1 cut(s) 135
Sfr274I CTCGAG 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 4 cut(s) 66, 78, 163, 212
TaqII GACCGA 1 cut(s) 181
TfiI GAWTC 1 cut(s) 209
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 193
TspGWI ACGGA 2 cut(s) 49, 111
XhoI CTCGAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.