pycom17g01160

Belongs to the adenylate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
804510 .. 804743
234 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 234 bp
ATGGCCGTACTCAGCCGCCTACAAGTAGTTGCGTCCCAGCTCACGCGCCGCGGCCTCGGGAATCTGGAGCGCCGAGCCTACGGATCGGCGGCGGCTCAGCTGCAGTACGAGGACGATGATTATTACTACGACGATATGGACGAAGAGGAGGAACAGAGGAAGACGAGTCGGAATCGGATGCTGGACTCGGACGGGTGGGTCCCGGGGAGAGGTGTGCAGTGGGTGCTGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130
Pfam Domains
Protein Families
ADK

Protein Analysis

78

Amino Acids

8.94

Weight (kDa)

4.65

Isoelectric Point (pI)

64.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AccII CGCG 2 cut(s) 46, 51
AciI CCGC 5 cut(s) 16, 49, 51, 89, 92
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 9, 107
AfiI CCNNNNNNNGG 1 cut(s) 209
AluBI AGCT 2 cut(s) 40, 100
AluI AGCT 2 cut(s) 40, 100
AlwI GGATC 1 cut(s) 91
Ama87I CYCGRG 2 cut(s) 56, 202
AoxI GGCC 2 cut(s) 3, 52
ApeKI GCWGC 1 cut(s) 100
AspLEI GCGC 2 cut(s) 48, 72
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 2 cut(s) 203, 204
AvaI CYCGRG 2 cut(s) 56, 202
AvaII GGWCC 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 87
BcnI CCSGG 2 cut(s) 203, 204
BfmI CTRYAG 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 73
BisI GCNGC 6 cut(s) 16, 49, 52, 90, 93, 101
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 6 cut(s) 17, 50, 53, 91, 94, 102
Bme1390I CCNGG 2 cut(s) 203, 204
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 2 cut(s) 56, 202
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 200, 201
BmrFI CCNGG 2 cut(s) 203, 204
BmsI GCATC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 86
Bpu1102I GCTNAGC 1 cut(s) 96
BpuMI CCSGG 2 cut(s) 203, 204
BsaJI CCNNGG 4 cut(s) 49, 55, 202, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 209
BseDI CCNNGG 4 cut(s) 49, 55, 202, 203
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 2 cut(s) 25, 110
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 87
BseYI CCCAGC 1 cut(s) 36
Bsh1236I CGCG 2 cut(s) 46, 51
BshFI GGCC 2 cut(s) 5, 54
BsiHKCI CYCGRG 2 cut(s) 56, 202
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 2 cut(s) 19, 185
BslI CCNNNNNNNGG 1 cut(s) 209
BsmFI GGGAC 2 cut(s) 19, 185
BsnI GGCC 2 cut(s) 5, 54
BsoBI CYCGRG 2 cut(s) 56, 202
Bsp143I GATC 2 cut(s) 83, 228
Bsp1720I GCTNAGC 1 cut(s) 96
BspACI CCGC 5 cut(s) 16, 49, 51, 89, 92
BspANI GGCC 2 cut(s) 5, 54
BspCNI CTCAG 2 cut(s) 24, 109
BspFNI CGCG 2 cut(s) 46, 51
BspLI GGNNCC 2 cut(s) 200, 201
BspMAI CTGCAG 1 cut(s) 105
BspPI GGATC 1 cut(s) 91
BssECI CCNNGG 4 cut(s) 49, 55, 202, 203
BssMI GATC 2 cut(s) 83, 228
Bst6I CTCTTC 1 cut(s) 138
BstAPI GCANNNNNTGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 11, 96
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 2 cut(s) 46, 51
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 2 cut(s) 48, 72
BstKTI GATC 2 cut(s) 86, 231
BstMBI GATC 2 cut(s) 83, 228
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 201, 202
BstSFI CTRYAG 1 cut(s) 101
BstUI CGCG 2 cut(s) 46, 51
BstV1I GCAGC 1 cut(s) 87
BstV2I GAAGAC 1 cut(s) 167
BsuRI GGCC 2 cut(s) 5, 54
BtgI CCRYGG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 183
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 224
CfoI GCGC 2 cut(s) 48, 72
Cfr13I GGNCC 1 cut(s) 199
Cfr42I CCGCGG 1 cut(s) 52
Cfr9I CCCGGG 1 cut(s) 202
CseI GACGC 1 cut(s) 21
Csp6I GTAC 2 cut(s) 8, 106
CviJI RGCY 7 cut(s) 5, 15, 40, 54, 77, 95, 100
CviKI_1 RGCY 7 cut(s) 5, 15, 40, 54, 77, 95, 100
CviQI GTAC 2 cut(s) 8, 106
DdeI CTNAG 2 cut(s) 11, 96
DpnI GATC 2 cut(s) 85, 230
DpnII GATC 2 cut(s) 83, 228
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 199
Eco88I CYCGRG 2 cut(s) 56, 202
EcoO109I RGGNCCY 1 cut(s) 199
FaiI YATR 1 cut(s) 137
FaqI GGGAC 2 cut(s) 19, 185
Fnu4HI GCNGC 6 cut(s) 16, 49, 52, 90, 93, 101
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 6 cut(s) 16, 49, 52, 90, 93, 101
GlaI GCGC 2 cut(s) 47, 71
GluI GCNGC 6 cut(s) 16, 49, 52, 90, 93, 101
GsaI CCCAGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 86
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 2 cut(s) 5, 54
HapII CCGG 1 cut(s) 203
HgaI GACGC 1 cut(s) 21
HhaI GCGC 2 cut(s) 48, 72
Hin6I GCGC 2 cut(s) 46, 70
HinP1I GCGC 2 cut(s) 46, 70
HinfI GANTC 4 cut(s) 61, 166, 172, 185
HpaII CCGG 1 cut(s) 203
Hpy188I TCNGA 4 cut(s) 171, 177, 190, 233
Hpy188III TCNNGA 2 cut(s) 58, 65
Hpy99I CGWCG 1 cut(s) 134
HpyCH4V TGCA 2 cut(s) 103, 217
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 2 cut(s) 11, 96
HspAI GCGC 2 cut(s) 46, 70
KflI GGGWCCC 1 cut(s) 199
KspI CCGCGG 1 cut(s) 52
Kzo9I GATC 2 cut(s) 83, 228
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 4 cut(s) 50, 50, 167, 216
Lsp1109I GCAGC 1 cut(s) 87
LweI GCATC 1 cut(s) 168
MalI GATC 2 cut(s) 85, 230
MboI GATC 2 cut(s) 83, 228
MboII GAAGA 2 cut(s) 155, 172
MlyI GAGTC 2 cut(s) 175, 179
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 6 cut(s) 65, 103, 139, 142, 150, 203
MspA1I CMGCKG 2 cut(s) 51, 100
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 2 cut(s) 203, 204
MvnI CGCG 2 cut(s) 46, 51
MwoI GCNNNNNNNGC 1 cut(s) 223
NciI CCSGG 2 cut(s) 203, 204
NdeII GATC 2 cut(s) 83, 228
NlaIV GGNNCC 2 cut(s) 200, 201
NmeAIII GCCGAG 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 2 cut(s) 61, 172
PkrI GCNGC 6 cut(s) 17, 50, 53, 91, 94, 102
PleI GAGTC 2 cut(s) 174, 179
PpsI GAGTC 2 cut(s) 174, 179
PpuMI RGGWCCY 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 200, 201
PspPI GGNCC 1 cut(s) 199
PspPPI RGGWCCY 1 cut(s) 199
PstI CTGCAG 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 100
RsaI GTAC 2 cut(s) 9, 107
RsaNI GTAC 2 cut(s) 8, 106
SacII CCGCGG 1 cut(s) 52
SatI GCNGC 6 cut(s) 16, 49, 52, 90, 93, 101
Sau3AI GATC 2 cut(s) 83, 228
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 2 cut(s) 175, 179
ScrFI CCNGG 2 cut(s) 203, 204
SetI ASST 3 cut(s) 42, 102, 214
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 101
Sfr303I CCGCGG 1 cut(s) 52
SgrBI CCGCGG 1 cut(s) 52
SinI GGWCC 1 cut(s) 199
SmaI CCCGGG 1 cut(s) 204
SsiI CCGC 5 cut(s) 16, 49, 51, 89, 92
StyD4I CCNGG 2 cut(s) 201, 202
TauI GCSGC 5 cut(s) 18, 51, 54, 92, 95
TfiI GAWTC 2 cut(s) 61, 172
TscAI CASTG 1 cut(s) 224
TseI GCWGC 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 96
TspMI CCCGGG 1 cut(s) 202
TspRI CASTG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 199
XmaI CCCGGG 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.