Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1003290 .. 1004087

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGATCAAACAGATACTTAATAGGCTCCCGAGGAAGCCCAAGTCATCCGAGCATCGTGAGGGAGGGTCCTCTAACACTAATTCAAATGCTTCCGCCAGTTCAAGAGGCAACTCTATATCAAGTAACAAGTATGCAAGCTCGAGTACTACTTTTTCGAGCGCTACTTCTACTCCAAACTTTGGAGTAAATGTGAATTCGAAGCTTAATGGGAACTCGTTGGCTTCTCCATATGAGGCATTGCCTAGTTTCAAAGATGTCCCGAATGCAGAGCAGCAAAACTTGTTGATAAAAAAGTTGAACTTGTGTTGTGTTGTCTTTGACTTCAGTGACCCAACGAAGAACATCAAGGAAAAGGAGATCAAGCGACAGACATTGGTAGAGCTTGTGGATTACATTGCTTCTGCTAATGGGAAATTCCCAGAAATTGTCGTGCAAGAAATCGTAAGGATGGTGTGCATAAATTTATTTAGAACACTCAGTTCTCCTCCCCTTGAAAACAAAGCATTAGAGGCCTTTGATGTAGAAGAGGAAGAGCCCTCGATGGACCCAGCATGGCCGCACTTGCAAGTTGTGTATGAATTCTTCCTGAGGTTTGTGGCATCACCTGAGACGGATGCAAAGTTGGCTAAGAGGTACATAAGAGATCGATCACTCTTTTGTTCTCAGGTTGTTAGGTCTTTTCGATTCAGAGGACCACAGAGAGAGGGATTACTTGAAAACGGTTCTGCACCGCATCTATGGGAAATTTATGGTGCACCGCCCGTTCATAAGGAAAGCAATCAACAACATCTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

266

Amino Acids

29.72

Weight (kDa)

8.6

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B56	PF01603	80 - 228	1.5e-48	Protein phosphatase 2A regulatory B subunit (B56 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	179
AciI	CCGC	4 cut(s)	93, 557, 731, 758
AcoI	YGGCCR	1 cut(s)	554
AcsI	RAATTY	5 cut(s)	193, 413, 460, 578, 744
AcuI	CTGAAG	1 cut(s)	307
AfaI	GTAC	2 cut(s)	145, 635
AfeI	AGCGCT	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	6 cut(s)	84, 102, 250, 298, 494, 716
AluBI	AGCT	3 cut(s)	138, 202, 382
AluI	AGCT	3 cut(s)	138, 202, 382
Alw21I	GWGCWC	1 cut(s)	757
Alw26I	GTCTC	1 cut(s)	602
Alw44I	GTGCAC	1 cut(s)	753
Ama87I	CYCGRG	2 cut(s)	28, 139
Aor51HI	AGCGCT	1 cut(s)	160
AoxI	GGCC	2 cut(s)	510, 554
ApaLI	GTGCAC	1 cut(s)	753
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	5 cut(s)	193, 413, 460, 578, 744
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	3 cut(s)	66, 544, 692
AsuHPI	GGTGA	1 cut(s)	594
AsuII	TTCGAA	1 cut(s)	197
AvaI	CYCGRG	2 cut(s)	28, 139
AvaII	GGWCC	3 cut(s)	66, 544, 692
AxyI	CCTNAGG	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	757
BanII	GRGCYC	1 cut(s)	537
BarI	GAAGNNNNNNTAC	2 cut(s)	566, 598
Bbv12I	GWGCWC	1 cut(s)	757
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	2 cut(s)	442, 535
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	602
BfaI	CTAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	162
BisI	GCNGC	2 cut(s)	272, 557
BlsI	GCNGC	2 cut(s)	273, 558
BmcAI	AGTACT	1 cut(s)	145
Bme18I	GGWCC	3 cut(s)	66, 544, 692
BmeT110I	CYCGRG	2 cut(s)	28, 139
BmgT120I	GGNCC	3 cut(s)	66, 544, 692
BmiI	GGNNCC	3 cut(s)	26, 67, 546
BmsI	GCATC	4 cut(s)	61, 604, 608, 742
Bpu14I	TTCGAA	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	646
BsaJI	CCNNGG	1 cut(s)	29
BsaXI	ACNNNNNCTCC	4 cut(s)	154, 174, 184, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	96
Bse21I	CCTNAGG	1 cut(s)	587
Bse3DI	GCAATG	2 cut(s)	236, 393
BseCI	ATCGAT	1 cut(s)	646
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	3 cut(s)	44, 453, 619
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	2 cut(s)	236, 393
BseMII	CTCAG	4 cut(s)	490, 578, 597, 677
BseNI	ACTGG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	474
BseSI	GKGCMC	1 cut(s)	757
BseXI	GCAGC	1 cut(s)	283
BseYI	CCCAGC	1 cut(s)	547
BsgI	GTGCAG	1 cut(s)	711
BshFI	GGCC	2 cut(s)	512, 556
BshVI	ATCGAT	1 cut(s)	646
BsiHKAI	GWGCWC	1 cut(s)	757
BsiHKCI	CYCGRG	2 cut(s)	28, 139
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	602
BsmBI	CGTCTC	1 cut(s)	602
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	512, 556
BsoBI	CYCGRG	2 cut(s)	28, 139
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	537, 757
Bsp143I	GATC	4 cut(s)	3, 357, 643, 647
BspACI	CCGC	4 cut(s)	93, 557, 731, 758
BspANI	GGCC	2 cut(s)	512, 556
BspCNI	CTCAG	4 cut(s)	489, 579, 598, 676
BspDI	ATCGAT	1 cut(s)	646
BspLI	GGNNCC	3 cut(s)	26, 67, 546
BspQI	GCTCTTC	1 cut(s)	525
BspT104I	TTCGAA	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	236, 393
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	4 cut(s)	3, 357, 643, 647
Bst4CI	ACNGT	1 cut(s)	722
Bst6I	CTCTTC	2 cut(s)	519, 525
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	5 cut(s)	476, 587, 606, 627, 663
BstF5I	GGATG	3 cut(s)	44, 453, 619
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	4 cut(s)	6, 360, 646, 650
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	4 cut(s)	3, 357, 643, 647
BstMWI	GCNNNNNNNGC	3 cut(s)	509, 562, 623
BstSLI	GKGCMC	1 cut(s)	757
BstV1I	GCAGC	1 cut(s)	283
Bsu15I	ATCGAT	1 cut(s)	646
Bsu36I	CCTNAGG	1 cut(s)	587
BsuRI	GGCC	2 cut(s)	512, 556
BsuTUI	ATCGAT	1 cut(s)	646
BtsCI	GGATG	3 cut(s)	44, 453, 619
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	3 cut(s)	66, 544, 692
ClaI	ATCGAT	1 cut(s)	646
Csp6I	GTAC	2 cut(s)	144, 634
CviAII	CATG	1 cut(s)	552
CviQI	GTAC	2 cut(s)	144, 634
DdeI	CTNAG	5 cut(s)	476, 587, 606, 627, 663
DpnI	GATC	4 cut(s)	5, 359, 645, 649
DpnII	GATC	4 cut(s)	3, 357, 643, 647
EaeI	YGGCCR	1 cut(s)	554
Eam1104I	CTCTTC	2 cut(s)	519, 525
EarI	CTCTTC	2 cut(s)	519, 525
EciI	GGCGGA	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	537
Eco47I	GGWCC	3 cut(s)	66, 544, 692
Eco47III	AGCGCT	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	307
Eco81I	CCTNAGG	1 cut(s)	587
Eco88I	CYCGRG	2 cut(s)	28, 139
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRI	GAATTC	2 cut(s)	193, 578
EcoT38I	GRGCYC	1 cut(s)	537
Esp3I	CGTCTC	1 cut(s)	602
FaeI	CATG	1 cut(s)	555
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	1 cut(s)	551
FauNDI	CATATG	1 cut(s)	229
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	272, 557
FokI	GGATG	3 cut(s)	31, 460, 626
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	2 cut(s)	272, 557
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	2 cut(s)	272, 557
GsaI	CCCAGC	1 cut(s)	551
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	512, 556
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	555
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	1 cut(s)	684
HphI	GGTGA	1 cut(s)	594
Hpy166II	GTNNAC	1 cut(s)	755
Hpy188I	TCNGA	2 cut(s)	49, 689
Hpy188III	TCNNGA	5 cut(s)	28, 56, 102, 259, 586
Hpy8I	GTNNAC	1 cut(s)	755
HpyCH4III	ACNGT	1 cut(s)	722
HpyCH4V	TGCA	8 cut(s)	134, 266, 433, 456, 565, 617, 728, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	509, 562, 623
HpyF3I	CTNAG	5 cut(s)	476, 587, 606, 627, 663
Hsp92II	CATG	1 cut(s)	555
HspAI	GCGC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 357, 643, 647
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	6 cut(s)	109, 432, 561, 599, 618, 650
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	4 cut(s)	61, 604, 608, 742
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	122, 326
MalI	GATC	4 cut(s)	5, 359, 645, 649
MboI	GATC	4 cut(s)	3, 357, 643, 647
MboII	GAAGA	5 cut(s)	349, 536, 542, 574, 782
MhlI	GDGCHC	2 cut(s)	537, 757
MluCI	AATT	7 cut(s)	79, 193, 413, 423, 460, 578, 744
MseI	TTAA	2 cut(s)	18, 204
Mva1269I	GAATGC	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	509, 562, 623
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	4 cut(s)	3, 357, 643, 647
NlaIII	CATG	1 cut(s)	555
NlaIV	GGNNCC	3 cut(s)	26, 67, 546
NmuCI	GTSAC	1 cut(s)	326
NspV	TTCGAA	1 cut(s)	197
PaeR7I	CTCGAG	1 cut(s)	139
PceI	AGGCCT	1 cut(s)	512
PciSI	GCTCTTC	1 cut(s)	525
PctI	GAATGC	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	684
PflMI	CCANNNNNTGG	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	273, 558
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	547
PspN4I	GGNNCC	3 cut(s)	26, 67, 546
PspPI	GGNCC	3 cut(s)	66, 544, 692
PspPPI	RGGWCCY	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	139
RsaI	GTAC	2 cut(s)	145, 635
RsaNI	GTAC	2 cut(s)	144, 634
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	18, 204
SatI	GCNGC	2 cut(s)	272, 557
Sau3AI	GATC	4 cut(s)	3, 357, 643, 647
Sau96I	GGNCC	3 cut(s)	66, 544, 692
ScaI	AGTACT	1 cut(s)	145
SduI	GDGCHC	2 cut(s)	537, 757
SetI	ASST	8 cut(s)	140, 204, 384, 593, 607, 635, 669, 677
SfaNI	GCATC	4 cut(s)	61, 604, 608, 742
Sfr274I	CTCGAG	1 cut(s)	139
SfuI	TTCGAA	1 cut(s)	197
SinI	GGWCC	3 cut(s)	66, 544, 692
SlaI	CTCGAG	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	7 cut(s)	79, 193, 413, 423, 460, 578, 744
SseBI	AGGCCT	1 cut(s)	512
SsiI	CCGC	4 cut(s)	93, 557, 731, 758
SspMI	CTAG	1 cut(s)	243
StuI	AGGCCT	1 cut(s)	512
TaaI	ACNGT	1 cut(s)	722
TaqI	TCGA	6 cut(s)	140, 155, 197, 539, 646, 682
TasI	AATT	7 cut(s)	79, 193, 413, 423, 460, 578, 744
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	1 cut(s)	684
Tru1I	TTAA	2 cut(s)	18, 204
Tru9I	TTAA	2 cut(s)	18, 204
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	591, 755
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	179
VneI	GTGCAC	1 cut(s)	753
VpaK11BI	GGWCC	3 cut(s)	66, 544, 692
XapI	RAATTY	5 cut(s)	193, 413, 460, 578, 744
XhoI	CTCGAG	1 cut(s)	139
XspI	CTAG	1 cut(s)	243
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.