Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1296204 .. 1296640

Gene Structure 437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGATTTTTCTGAAAACTCTAGCATGCCATGAATTCATTTATAAAACCGCCCGAAGGCAAATCCATAAATCTCATCCATACTGTACCCATGATTTTGAGTATGGCATCTACTCCCGCGACTACGACAACCGCACTCCGCTCCACATCGCCTCGCCCCAAGGCTGGATCGATGTTTCTGGTCACCTACTAATCCACAGCTGGATCGACATGCTGCTCCTTCCTTTCGTGGTCTTCGGCTCTTCCTCCGTCAGCTCAATTGAGGACGGCTCCGCCAAATCCAACGCAAGCATTGATCCCTTTAACCCTGACGTGGGTTTTTGCCATTTTTTGCATATTGTAATTGGAATTTCAATATATATTTTTTATTTTAATTTCATTAATTCCTACGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0023052 GO:0030154 GO:0030435 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Pkinase_Tyr

Protein Analysis

132

Amino Acids

15.09

Weight (kDa)

6.08

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	42
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	1 cut(s)	117
AciI	CCGC	5 cut(s)	48, 115, 130, 137, 270
AclWI	GGATC	3 cut(s)	173, 209, 287
AcsI	RAATTY	2 cut(s)	32, 345
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	4 cut(s)	54, 162, 310, 311
AgsI	TTSAA	1 cut(s)	351
AjiI	CACGTC	1 cut(s)	310
AluBI	AGCT	2 cut(s)	198, 252
AluI	AGCT	2 cut(s)	198, 252
AlwI	GGATC	3 cut(s)	173, 209, 287
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	2 cut(s)	32, 345
AseI	ATTAAT	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	198
BceAI	ACGGC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	20
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	223
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
Bsa29I	ATCGAT	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 162, 310, 311
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	4 cut(s)	54, 162, 310, 311
BseXI	GCAGC	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	117
BshVI	ATCGAT	1 cut(s)	168
BslI	CCNNNNNNNGG	4 cut(s)	54, 162, 310, 311
Bsp143I	GATC	4 cut(s)	165, 201, 292, 388
BspACI	CCGC	5 cut(s)	48, 115, 130, 137, 270
BspDI	ATCGAT	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	3 cut(s)	173, 209, 287
BspQI	GCTCTTC	1 cut(s)	244
BsrBI	CCGCTC	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	4 cut(s)	165, 201, 292, 388
BssT1I	CCWWGG	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	25, 286
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	4 cut(s)	168, 204, 295, 391
BstMBI	GATC	4 cut(s)	165, 201, 292, 388
BstNSI	RCATGY	2 cut(s)	27, 211
BstPI	GGTNACC	1 cut(s)	179
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	223
Bsu15I	ATCGAT	1 cut(s)	168
BsuTUI	ATCGAT	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	130
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	25, 286
ClaI	ATCGAT	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	4 cut(s)	24, 29, 89, 208
CviJI	RGCY	5 cut(s)	162, 198, 237, 252, 267
CviKI_1	RGCY	5 cut(s)	162, 198, 237, 252, 267
CviQI	GTAC	1 cut(s)	84
DpnI	GATC	4 cut(s)	167, 203, 294, 390
DpnII	GATC	4 cut(s)	165, 201, 292, 388
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
EciI	GGCGGA	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	157
Eco91I	GGTNACC	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	4 cut(s)	27, 32, 92, 211
FatI	CATG	4 cut(s)	23, 28, 88, 207
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	1 cut(s)	212
Hin1II	CATG	4 cut(s)	27, 32, 92, 211
HphI	GGTGA	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	12
HpyAV	CCTTC	2 cut(s)	48, 227
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	1 cut(s)	331
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	4 cut(s)	27, 32, 92, 211
Kzo9I	GATC	4 cut(s)	165, 201, 292, 388
LguI	GCTCTTC	1 cut(s)	244
LmnI	GCTCC	3 cut(s)	144, 219, 272
LpnPI	CCDG	4 cut(s)	148, 162, 184, 318
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	4 cut(s)	167, 203, 294, 390
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	4 cut(s)	165, 201, 292, 388
MboII	GAAGA	2 cut(s)	223, 231
MfeI	CAATTG	1 cut(s)	255
MluCI	AATT	6 cut(s)	32, 255, 339, 345, 370, 379
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	3 cut(s)	160, 253, 253
MseI	TTAA	3 cut(s)	300, 369, 378
MspA1I	CMGCKG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	117
NdeII	GATC	4 cut(s)	165, 201, 292, 388
NlaIII	CATG	4 cut(s)	27, 32, 92, 211
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	179
NspI	RCATGY	2 cut(s)	27, 211
PaeI	GCATGC	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	378
PsiI	TTATAA	1 cut(s)	42
PspEI	GGTNACC	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	198
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	244
SaqAI	TTAA	3 cut(s)	300, 369, 378
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	4 cut(s)	165, 201, 292, 388
SetI	ASST	4 cut(s)	186, 200, 254, 312
SfaNI	GCATC	1 cut(s)	114
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	6 cut(s)	32, 255, 339, 345, 370, 379
SsiI	CCGC	5 cut(s)	48, 115, 130, 137, 270
SspMI	CTAG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	168, 204
TasI	AATT	6 cut(s)	32, 255, 339, 345, 370, 379
Tru1I	TTAA	3 cut(s)	300, 369, 378
Tru9I	TTAA	3 cut(s)	300, 369, 378
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	3 cut(s)	25, 45, 364
TspGWI	ACGGA	1 cut(s)	235
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	2 cut(s)	32, 345
XceI	RCATGY	2 cut(s)	27, 211
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.