pycom17g02090

AI-2E family transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Reverse (-)
1327935 .. 1328518
584 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
ATGAGCATCACATTCTTTCAAGGGAGGCTTGCGTATCTCTTGTTTCGATTCTACCAGATTCATTTCCTCTACATGTCCACATCCCTCGCTCTTATGAGCGCTGTTTTGCAAATTACACCGGCTTGGTTCTTGTCCATTCCGGCTGCGCTGCTGCTGATTCTGTTAGAATACGGCACAGCAGCTATCCAAGATGAGATTCCAGGACAGAACGCCTACCTCACTGGCCTTAGCATACTTGGGGGCATTGCACTTTTCCCCTCCATGTTGGAAGTAATTTTCCTCTTTTCTAAACATTATTCTTGTGAATTAATGCTTGCATTTGTGTTAATTAGAGGAGCGATTATGGGTCCTCTGCTGATGACAATGATGATTGCCTTCAAGAATCTGTACGTAGAATTTGTCCTTGCATCTGGAAAAGAAGCCACTGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AI-2E_transport

Protein Analysis

145

Amino Acids

16.04

Weight (kDa)

6.25

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 395
AfaI GTAC 1 cut(s) 389
AfeI AGCGCT 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 72
AgsI TTSAA 2 cut(s) 20, 379
AjnI CCWGG 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Aor51HI AGCGCT 1 cut(s) 100
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 4 cut(s) 143, 148, 151, 179
ApoI RAATTY 1 cut(s) 395
AseI ATTAAT 1 cut(s) 308
AspLEI GCGC 2 cut(s) 101, 148
AspS9I GGNCC 1 cut(s) 347
AvaII GGWCC 1 cut(s) 347
BbvI GCAGC 4 cut(s) 130, 135, 138, 191
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 102
BisI GCNGC 4 cut(s) 144, 149, 152, 180
BlsI GCNGC 4 cut(s) 145, 150, 153, 181
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 2 cut(s) 15, 416
Bpu10I CCTNAGC 1 cut(s) 227
BsaAI YACGTR 1 cut(s) 391
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 80
BseMI GCAATG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 4 cut(s) 130, 135, 138, 191
BshFI GGCC 1 cut(s) 225
BsiSI CCGG 2 cut(s) 119, 140
BsnI GGCC 1 cut(s) 225
BspANI GGCC 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 1 cut(s) 226
BssAI RCCGGY 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 201
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 2 cut(s) 30, 315
BstDEI CTNAG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 80
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 2 cut(s) 101, 148
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 199
BstSNI TACGTA 1 cut(s) 391
BstV1I GCAGC 4 cut(s) 130, 135, 138, 191
BsuRI GGCC 1 cut(s) 225
BtsCI GGATG 1 cut(s) 80
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 2 cut(s) 219, 423
Cac8I GCNNGC 2 cut(s) 30, 315
CfoI GCGC 2 cut(s) 101, 148
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 388
CviAII CATG 2 cut(s) 73, 262
CviJI RGCY 6 cut(s) 28, 122, 143, 182, 225, 422
CviKI_1 RGCY 6 cut(s) 28, 122, 143, 182, 225, 422
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 1 cut(s) 227
Eco105I TACGTA 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 347
Eco47III AGCGCT 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 199
FaeI CATG 2 cut(s) 76, 265
FaiI YATR 5 cut(s) 74, 95, 233, 263, 344
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 2 cut(s) 72, 261
Fnu4HI GCNGC 4 cut(s) 144, 149, 152, 180
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 4 cut(s) 144, 149, 152, 180
GlaI GCGC 2 cut(s) 100, 147
GluI GCNGC 4 cut(s) 144, 149, 152, 180
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 1 cut(s) 225
HapII CCGG 2 cut(s) 119, 140
HhaI GCGC 2 cut(s) 101, 148
Hin1II CATG 2 cut(s) 76, 265
Hin6I GCGC 2 cut(s) 99, 146
HinP1I GCGC 2 cut(s) 99, 146
HinfI GANTC 5 cut(s) 48, 58, 157, 196, 382
HpaII CCGG 2 cut(s) 119, 140
Hpy166II GTNNAC 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 379, 411
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 385
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 4 cut(s) 109, 248, 317, 407
HpyF3I CTNAG 1 cut(s) 227
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 2 cut(s) 76, 265
HspAI GCGC 2 cut(s) 99, 146
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 7 cut(s) 68, 132, 153, 186, 207, 213, 396
Lsp1109I GCAGC 4 cut(s) 130, 135, 138, 191
LweI GCATC 2 cut(s) 15, 416
MaeII ACGT 1 cut(s) 390
MluCI AATT 5 cut(s) 111, 273, 305, 327, 395
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 8 cut(s) 18, 77, 95, 227, 268, 290, 326, 360
MseI TTAA 2 cut(s) 308, 326
MspI CCGG 2 cut(s) 119, 140
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
NlaIII CATG 2 cut(s) 76, 265
NlaIV GGNNCC 1 cut(s) 348
NspI RCATGY 1 cut(s) 76
PciI ACATGT 1 cut(s) 72
PfeI GAWTC 5 cut(s) 48, 58, 157, 196, 382
PfoI TCCNGGA 1 cut(s) 199
PkrI GCNGC 4 cut(s) 145, 150, 153, 181
Ppu21I YACGTR 1 cut(s) 391
PpuMI RGGWCCY 1 cut(s) 347
PscI ACATGT 1 cut(s) 72
PshBI ATTAAT 1 cut(s) 308
Psp5II RGGWCCY 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 1 cut(s) 347
PspPPI RGGWCCY 1 cut(s) 347
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SaqAI TTAA 2 cut(s) 308, 326
SatI GCNGC 4 cut(s) 144, 149, 152, 180
Sau96I GGNCC 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 201
SetI ASST 3 cut(s) 184, 219, 393
SfaNI GCATC 2 cut(s) 15, 416
SinI GGWCC 1 cut(s) 347
SnaBI TACGTA 1 cut(s) 391
Sse9I AATT 5 cut(s) 111, 273, 305, 327, 395
StyD4I CCNGG 1 cut(s) 199
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 46
TasI AATT 5 cut(s) 111, 273, 305, 327, 395
TfiI GAWTC 5 cut(s) 48, 58, 157, 196, 382
Tru1I TTAA 2 cut(s) 308, 326
Tru9I TTAA 2 cut(s) 308, 326
TscAI CASTG 2 cut(s) 226, 430
TseI GCWGC 4 cut(s) 143, 148, 151, 179
TspDTI ATGAA 1 cut(s) 50
TspRI CASTG 2 cut(s) 226, 430
VpaK11BI GGWCC 1 cut(s) 347
VspI ATTAAT 1 cut(s) 308
XapI RAATTY 1 cut(s) 395
XceI RCATGY 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.