pycom17g02780

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
1854566 .. 1855442
877 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 309 bp
ATGGCGTCCGCTACAAAACTTCTTTCTCCGTTTCGGAAATCCCTAAGTTCACTAATCTCTTCCCGCTCAATCTCTCCTTCCAGGCAATTCTATTATGCCAAGTTTGAACCGATACAGCGGATTCGCGCCTCAACGTTTCATCGTTCCTTGAATTTGCAAAACAATTCTCTTCAGAAAATCTGGTTTTCAGGAAGTAAGTTGAGATATGGAAGCATTCTTGGTGTGACAGTTTTGTTTTGGTCAGTCAGCTTCTTGCCAAATGCTGCATATGCTATGGAAGGCCAGGATATGTTGGTGAATGATCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.61

Weight (kDa)

10.73

Isoelectric Point (pI)

61.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 66
AccII CGCG 1 cut(s) 126
AciI CCGC 3 cut(s) 9, 64, 118
AclI AACGTT 1 cut(s) 134
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 5
AgsI TTSAA 2 cut(s) 107, 151
AjnI CCWGG 2 cut(s) 80, 282
AluBI AGCT 1 cut(s) 249
AluI AGCT 1 cut(s) 249
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 151
AspLEI GCGC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 307
BbvI GCAGC 1 cut(s) 250
BciT130I CCWGG 2 cut(s) 82, 284
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 82, 284
BmrFI CCNGG 2 cut(s) 82, 284
Bsa29I ATCGAT 1 cut(s) 304
BsaHI GRCGYC 1 cut(s) 5
BseBI CCWGG 2 cut(s) 82, 284
BseCI ATCGAT 1 cut(s) 304
BseXI GCAGC 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 1 cut(s) 282
BshVI ATCGAT 1 cut(s) 304
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 301
BspACI CCGC 3 cut(s) 9, 64, 118
BspANI GGCC 1 cut(s) 282
BspDI ATCGAT 1 cut(s) 304
BspFNI CGCG 1 cut(s) 126
BsrBI CCGCTC 1 cut(s) 66
BssMI GATC 1 cut(s) 301
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 82, 284
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 2 cut(s) 64, 174
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 44
BstFNI CGCG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 2 cut(s) 82, 284
BstSCI CCNGG 2 cut(s) 80, 282
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 250
Bsu15I ATCGAT 1 cut(s) 304
BsuRI GGCC 1 cut(s) 282
BsuTUI ATCGAT 1 cut(s) 304
CfoI GCGC 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 304
CviJI RGCY 2 cut(s) 249, 282
CviKI_1 RGCY 2 cut(s) 249, 282
DdeI CTNAG 1 cut(s) 44
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
Eam1104I CTCTTC 2 cut(s) 64, 174
EarI CTCTTC 2 cut(s) 64, 174
Eco57I CTGAAG 1 cut(s) 155
EcoRII CCWGG 2 cut(s) 80, 282
FaiI YATR 6 cut(s) 96, 207, 268, 270, 275, 290
FauI CCCGC 1 cut(s) 71
FauNDI CATATG 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 264
GlaI GCGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 264
HaeIII GGCC 1 cut(s) 282
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 1 cut(s) 121
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 2 cut(s) 36, 174
Hpy188III TCNNGA 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 87, 272
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 2 cut(s) 157, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 1 cut(s) 301
LpnPI CCDG 6 cut(s) 67, 94, 166, 174, 269, 296
Lsp1109I GCAGC 1 cut(s) 250
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 303
MbiI CCGCTC 1 cut(s) 66
MboI GATC 1 cut(s) 301
MboII GAAGA 2 cut(s) 51, 161
MluCI AATT 3 cut(s) 86, 151, 163
MnlI CCTC 1 cut(s) 139
MspA1I CMGCKG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 82, 284
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 2 cut(s) 82, 284
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeI CATATG 1 cut(s) 268
NdeII GATC 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 223
PctI GAATGC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 1 cut(s) 265
Psp1406I AACGTT 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 80, 282
PspGI CCWGG 2 cut(s) 80, 282
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 82, 284
SetI ASST 2 cut(s) 137, 251
Sse9I AATT 3 cut(s) 86, 151, 163
SsiI CCGC 3 cut(s) 9, 64, 118
StyD4I CCNGG 2 cut(s) 80, 282
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 137
TaqI TCGA 1 cut(s) 304
TasI AATT 3 cut(s) 86, 151, 163
TfiI GAWTC 1 cut(s) 121
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 18
XapI RAATTY 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.