Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1958590 .. 1959420

Gene Structure 831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAAAACGTGCAATGAGCTCTCAACCTATAAATACAGAAACTTAAGCTTCAAACCCTCACATCAAACCCTCACATTCTTCTCATCTTTCTTAAAGAAAGTTAAGGTTAATATTATGAGGACGTTTAACCTAAAAACCCTCTCGTTCTTTGTTCTCATTGCGTTTTTTATCTCGTTTTCGAGTTTTCTCGAACCGTGTTATGCTCGAAAAGGAGGCAATAAGCAGCACTGGAGGAAGAAACAAAAGGGTTATGGTGGTGATCATCGCCGCTCTGTGAGGGAAGACAGTTACATCACACCAGAAGAAACTGCGGTGACACTTGGAGAAAACAGCGGCGGGGTTTCGAACGTGTTTAATGTGTTGGACTACGGTGCTAAAGGTGATGGAAAAGCAGATGACACCAAGGCATTCGAGGCGGCGTGGGCAGCAGCTTGCAAGGTGCAGTCATCAACTATGAGTGTTCCATCCGGGTCTGTGTTCCTTGTCAAACCAATCTCTTTCTCCGGCCCTAATTGCGAAGCAAATATCGTGTTTCAGATGGTAAAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009825 GO:0009827 GO:0009831 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016798 GO:0030312 GO:0040007 GO:0042545 GO:0042547 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

184

Amino Acids

20.41

Weight (kDa)

9.6

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pect-lyase_RHGA_epim	PF12708	118 - 163	1.5e-06	Rhamnogalacturonase A/epimerase, pectate lyase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	270
AciI	CCGC	5 cut(s)	268, 311, 333, 336, 416
AflII	CTTAAG	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	52
AluBI	AGCT	3 cut(s)	19, 48, 431
AluI	AGCT	3 cut(s)	19, 48, 431
Alw21I	GWGCWC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	505
ApeKI	GCWGC	3 cut(s)	223, 425, 428
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	3 cut(s)	269, 325, 392
AsuII	TTCGAA	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	3 cut(s)	235, 437, 440
BccI	CCATC	3 cut(s)	377, 472, 532
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	469
BfrI	CTTAAG	1 cut(s)	43
BisI	GCNGC	6 cut(s)	224, 268, 334, 417, 426, 429
BlsI	GCNGC	6 cut(s)	225, 269, 335, 418, 427, 430
Bme1390I	CCNGG	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	506
BmrFI	CCNGG	1 cut(s)	469
BpiI	GAAGAC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	250
Bpu14I	TTCGAA	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	469
BsaJI	CCNNGG	1 cut(s)	402
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	2 cut(s)	19, 156
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	1 cut(s)	464
BseMI	GCAATG	2 cut(s)	19, 156
BseNI	ACTGG	1 cut(s)	233
BseXI	GCAGC	3 cut(s)	235, 437, 440
BsgI	GTGCAG	1 cut(s)	461
BshFI	GGCC	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	468, 504
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	507
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	5 cut(s)	268, 311, 333, 336, 416
BspANI	GGCC	1 cut(s)	507
BspT104I	TTCGAA	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	43
BsrBI	CCGCTC	1 cut(s)	270
BsrDI	GCAATG	2 cut(s)	19, 156
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	1 cut(s)	259
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	3 cut(s)	195, 287, 371
BstAFI	CTTAAG	1 cut(s)	43
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	433
BstF5I	GGATG	1 cut(s)	464
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	4 cut(s)	413, 422, 425, 513
BstSCI	CCNGG	1 cut(s)	467
BstV1I	GCAGC	3 cut(s)	235, 437, 440
BstV2I	GAAGAC	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	507
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	506
CviJI	RGCY	4 cut(s)	19, 48, 431, 507
CviKI_1	RGCY	4 cut(s)	19, 48, 431, 507
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Ecl136II	GAGCTC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	19
EcoICRI	GAGCTC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	402
FaiI	YATR	6 cut(s)	30, 116, 201, 252, 455, 550
FauI	CCCGC	1 cut(s)	329
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	6 cut(s)	224, 268, 334, 417, 426, 429
FokI	GGATG	1 cut(s)	451
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	6 cut(s)	224, 268, 334, 417, 426, 429
GluI	GCNGC	6 cut(s)	224, 268, 334, 417, 426, 429
GsuI	CTGGAG	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	507
HapII	CCGG	2 cut(s)	468, 504
HindIII	AAGCTT	1 cut(s)	46
HpaII	CCGG	2 cut(s)	468, 504
HphI	GGTGA	3 cut(s)	269, 325, 392
Hpy188I	TCNGA	1 cut(s)	537
Hpy188III	TCNNGA	1 cut(s)	188
HpyCH4III	ACNGT	3 cut(s)	195, 287, 371
HpyCH4IV	ACGT	3 cut(s)	8, 122, 348
HpyCH4V	TGCA	3 cut(s)	12, 435, 442
HpyF10VI	GCNNNNNNNGC	4 cut(s)	413, 422, 425, 513
HpySE526I	ACGT	3 cut(s)	8, 122, 348
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	259
LpnPI	CCDG	4 cut(s)	214, 312, 481, 517
Lsp1109I	GCAGC	3 cut(s)	235, 437, 440
MaeII	ACGT	3 cut(s)	8, 122, 348
MaeIII	GTNAC	2 cut(s)	287, 313
MalI	GATC	1 cut(s)	261
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	1 cut(s)	259
MboII	GAAGA	4 cut(s)	70, 247, 293, 314
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	511
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	8 cut(s)	67, 80, 111, 149, 206, 225, 270, 406
MseI	TTAA	6 cut(s)	44, 92, 102, 108, 126, 354
MspA1I	CMGCKG	1 cut(s)	333
MspCI	CTTAAG	1 cut(s)	43
MspI	CCGG	2 cut(s)	468, 504
MspR9I	CCNGG	1 cut(s)	469
Mva1269I	GAATGC	1 cut(s)	407
MwoI	GCNNNNNNNGC	4 cut(s)	413, 422, 425, 513
NciI	CCSGG	1 cut(s)	469
NdeII	GATC	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	313
NspV	TTCGAA	1 cut(s)	344
PctI	GAATGC	1 cut(s)	407
PkrI	GCNGC	6 cut(s)	225, 269, 335, 418, 427, 430
Psp124BI	GAGCTC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	6 cut(s)	44, 92, 102, 108, 126, 354
SatI	GCNGC	6 cut(s)	224, 268, 334, 417, 426, 429
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	469
SduI	GDGCHC	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	1 cut(s)	511
SsiI	CCGC	5 cut(s)	268, 311, 333, 336, 416
SspI	AATATT	1 cut(s)	112
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	467
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	3 cut(s)	195, 287, 371
TaiI	ACGT	3 cut(s)	11, 125, 351
TaqI	TCGA	5 cut(s)	179, 189, 205, 344, 411
TasI	AATT	1 cut(s)	511
TauI	GCSGC	3 cut(s)	270, 336, 419
Tru1I	TTAA	6 cut(s)	44, 92, 102, 108, 126, 354
Tru9I	TTAA	6 cut(s)	44, 92, 102, 108, 126, 354
TscAI	CASTG	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	3 cut(s)	223, 425, 428
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	233
Vha464I	CTTAAG	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.