pycom17g03120

Phosphoglucan phosphatase LSF1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
2053779 .. 2054697
919 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 516 bp
ATGCAGAAGAATACTGTTGCCCAACCCCTGAGCCAACTTGCTTGTATTTACGCTGAAGAGGAGTCCGGCGATGGAGAATGGGCTCATGGGAACTTCCCACTGGATGAATATGTTAAGGCATTGGATCGCTCTAAAGGCGAACTATACTATAACCATGCTCTTGGTATGCGCTACAGTAAGATTACTGAACACATAAACGTTGGATCATGCATACAAACAGAAGATGATGTGGCGGCATTGGAAAATGTGGCAGGAGTTACTGCTATACTGAATTTCCAAAGTGGAACTGAGACAGAAAATTGGGGAATAAATTCCAATGCAATAAATGAGTCATGCCAAAAGTTCGGTATTCTGATGATTAACTATCCAATAAGGGAGGGAGATTCTTGTGATTTGAGGAAGAAACTACCATTCTGTGTTGGATTATTATTACGCTTATTAAAGAAGAATCATCGTGTTTTTGTTACTTGTACAACTGGTAACAATGCAAGATTGATCGGTCTCCTACTTGCGTAA

Protein Analysis

172

Amino Acids

18.97

Weight (kDa)

5.56

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 233
AclI AACGTT 1 cut(s) 198
AclWI GGATC 2 cut(s) 132, 211
AcsI RAATTY 2 cut(s) 271, 310
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 1 cut(s) 472
Alw26I GTCTC 2 cut(s) 284, 506
AlwI GGATC 2 cut(s) 132, 211
ApoI RAATTY 2 cut(s) 271, 310
Asp700I GAANNNNTTC 1 cut(s) 310
AspLEI GCGC 1 cut(s) 171
BanII GRGCYC 1 cut(s) 85
BccI CCATC 1 cut(s) 65
BcoDI GTCTC 2 cut(s) 284, 506
BfmI CTRYAG 1 cut(s) 172
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 506
Bse1I ACTGG 2 cut(s) 105, 481
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 20, 279
BseNI ACTGG 2 cut(s) 105, 481
BseRI GAGGAG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 66
BsmAI GTCTC 2 cut(s) 284, 506
Bso31I GGTCTC 1 cut(s) 506
Bsp1286I GDGCHC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 470
Bsp143I GATC 3 cut(s) 124, 203, 495
BspACI CCGC 1 cut(s) 233
BspCNI CTCAG 2 cut(s) 21, 280
BspPI GGATC 2 cut(s) 132, 211
BspTNI GGTCTC 1 cut(s) 506
BsrGI TGTACA 1 cut(s) 470
BsrI ACTGG 2 cut(s) 105, 481
BssMI GATC 3 cut(s) 124, 203, 495
Bst4CI ACNGT 2 cut(s) 16, 176
Bst6I CTCTTC 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 470
BstDEI CTNAG 2 cut(s) 29, 288
BstF5I GGATG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 3 cut(s) 127, 206, 498
BstMAI GTCTC 2 cut(s) 284, 506
BstMBI GATC 3 cut(s) 124, 203, 495
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 161
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 98
CfoI GCGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 471
CviAII CATG 4 cut(s) 86, 155, 207, 333
CviJI RGCY 2 cut(s) 33, 83
CviKI_1 RGCY 2 cut(s) 33, 83
CviQI GTAC 1 cut(s) 471
DdeI CTNAG 2 cut(s) 29, 288
DpnI GATC 3 cut(s) 126, 205, 497
DpnII GATC 3 cut(s) 124, 203, 495
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 506
Eco57I CTGAAG 1 cut(s) 75
EcoT22I ATGCAT 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 85
FaeI CATG 4 cut(s) 89, 158, 210, 336
FatI CATG 4 cut(s) 85, 154, 206, 332
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 234
GlaI GCGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 234
HapII CCGG 1 cut(s) 66
HhaI GCGC 1 cut(s) 171
Hin1II CATG 4 cut(s) 89, 158, 210, 336
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 4 cut(s) 62, 329, 383, 448
HpaII CCGG 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 354
HpyCH4III ACNGT 2 cut(s) 16, 176
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 4 cut(s) 4, 210, 320, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 2 cut(s) 29, 288
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 4 cut(s) 89, 158, 210, 336
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 3 cut(s) 124, 203, 495
LpnPI CCDG 5 cut(s) 41, 79, 86, 237, 462
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 3 cut(s) 256, 463, 479
MalI GATC 3 cut(s) 126, 205, 497
MboI GATC 3 cut(s) 124, 203, 495
MboII GAAGA 5 cut(s) 19, 68, 233, 412, 457
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 3 cut(s) 271, 298, 310
MlyI GAGTC 2 cut(s) 71, 338
MmeI TCCRAC 2 cut(s) 181, 400
MnlI CCTC 3 cut(s) 52, 370, 390
Mph1103I ATGCAT 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 310
MseI TTAA 3 cut(s) 114, 360, 440
MspI CCGG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 135
NdeII GATC 3 cut(s) 124, 203, 495
NlaIII CATG 4 cut(s) 89, 158, 210, 336
NsiI ATGCAT 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 383, 448
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 2 cut(s) 70, 337
PpsI GAGTC 2 cut(s) 70, 337
Psp1406I AACGTT 1 cut(s) 198
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
SaqAI TTAA 3 cut(s) 114, 360, 440
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 3 cut(s) 124, 203, 495
SchI GAGTC 2 cut(s) 71, 338
SduI GDGCHC 1 cut(s) 85
SetI ASST 1 cut(s) 201
SfcI CTRYAG 1 cut(s) 172
Sse9I AATT 3 cut(s) 271, 298, 310
SsiI CCGC 1 cut(s) 233
TaaI ACNGT 2 cut(s) 16, 176
TaiI ACGT 1 cut(s) 201
TaqII GACCGA 1 cut(s) 488
TasI AATT 3 cut(s) 271, 298, 310
TatI WGTACW 1 cut(s) 470
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 2 cut(s) 383, 448
Tru1I TTAA 3 cut(s) 114, 360, 440
Tru9I TTAA 3 cut(s) 114, 360, 440
TscAI CASTG 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 1 cut(s) 105
XapI RAATTY 2 cut(s) 271, 310
XmnI GAANNNNTTC 1 cut(s) 310
Zsp2I ATGCAT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.