Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2213335 .. 2215905

Gene Structure 2571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAACCACCAAATTCTCGACCCCCACAGCGATCCTCGTCATCTGCATTTTGGCCCTCTTCATCGACCCTCTCTACTTTTACCTCCCTGGGTTGGGACACAGCTTGCTTGACCACCGACAACCAGCTCGCCGTCGTCGTCACCGTCTTCCGCACCATCACCGACCTCTTCTACCTCCTCCATATGATCATCAAGTTTCGTACCGCCTATGTCAATCCCAGTACTAGGGTTTTTGGCCGCGGTGACCTCGTCATGGACCCCCACCAGATTGCCATCCGCTGCTTGAAGTCCGACTTTGTTGTTGATCTTGCCGCCACGATTCTGGTCCCTCAGGCATGGCATTCAAACTGTGATTTGATTAATCGAGAGCTGATCACTTCCCGTGCCAACAACACTCTGACTCTATTCGTTTTGACTCCGTACATTCCTCGGATCTTCCTCATCTTCCCCTTGAATCAGCGTATCATCAAGACAACTGGTGTCGTAGCAAAGACTGCATGGGCAGGAGCTGCGTACAATCTCCTCCTCTTCGTTCTAGCCGGCTATATTGTTGGAGCTGTCTGGTATTTATCGTCCATAGGGCGGCAGTTCTCTTGCTGGAAATTGTATTGTAAAGAAGAGAACTCGAAAAAGATTGTTTCTTCCATCACAAGATTTCTGGATTGTAGTAGTATAGAACTACCAGAACGGAAGTACTGGATCAACGTCACTGAAGTTGTTAAAAATTGTGATGCAAATAATGAGAAAGCCAAATTTAAGTTGGGAATTTTTGGGGATGCTTTCAAGAGTGATGGTGCTACTACAACGGACTTCTATCCAAAGTACCTGTATTGTTTATGGTGGGGGTTGCAGTTATATAGTTTGACGGGCGATTTTATTACCGCTTTCCAGTATACGGAGGAGTGGATGAGGCATCGGCAGTTACCTGAGGATTTTTGTGAACGTGTTCATAGATTTTTGCACAATACAAACGATTTGCCACAAGAGGAGTTGATGAAGAATCACTATTGGGTTCATTGCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016324 GO:0019725 GO:0022414 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0042391 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0046873 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051704 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072503 GO:0072507 GO:0072511 GO:0098590 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

342

Amino Acids

39.31

Weight (kDa)

8.46

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	42 - 291	4.2e-07	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	893
AccII	CGCG	1 cut(s)	240
AciI	CCGC	8 cut(s)	151, 204, 238, 240, 277, 312, 583, 882
AclWI	GGATC	3 cut(s)	27, 440, 707
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	3 cut(s)	13, 752, 765
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	6 cut(s)	202, 223, 422, 515, 695, 824
AfiI	CCNNNNNNNGG	6 cut(s)	93, 94, 225, 253, 582, 895
AflIII	ACRYGT	1 cut(s)	943
AgsI	TTSAA	4 cut(s)	286, 345, 454, 784
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	5 cut(s)	104, 127, 370, 509, 557
AluI	AGCT	5 cut(s)	104, 127, 370, 509, 557
AlwI	GGATC	3 cut(s)	27, 440, 707
AlwNI	CAGNNNCTG	1 cut(s)	509
AoxI	GGCC	2 cut(s)	53, 235
ApeKI	GCWGC	2 cut(s)	279, 509
ApoI	RAATTY	3 cut(s)	13, 752, 765
AseI	ATTAAT	1 cut(s)	360
Asp700I	GAANNNNTTC	1 cut(s)	945
AspS9I	GGNCC	3 cut(s)	54, 256, 325
AsuHPI	GGTGA	3 cut(s)	133, 151, 254
AvaII	GGWCC	2 cut(s)	256, 325
AxyI	CCTNAGG	2 cut(s)	330, 927
BbsI	GAAGAC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	266, 496
BccI	CCATC	4 cut(s)	164, 281, 653, 785
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	2 cut(s)	186, 372
BfaI	CTAG	2 cut(s)	225, 536
BisI	GCNGC	5 cut(s)	238, 280, 312, 510, 584
BlsI	GCNGC	5 cut(s)	239, 281, 313, 511, 585
BmcAI	AGTACT	2 cut(s)	223, 695
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	2 cut(s)	256, 325
BmgT120I	GGNCC	3 cut(s)	54, 256, 325
BmiI	GGNNCC	3 cut(s)	6, 258, 327
BmrFI	CCNGG	1 cut(s)	89
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	3 cut(s)	721, 766, 922
BmuI	ACTGGG	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	272
BsaJI	CCNNGG	4 cut(s)	87, 88, 238, 428
Bsc4I	CCNNNNNNNGG	6 cut(s)	93, 94, 225, 253, 582, 895
Bse118I	RCCGGY	1 cut(s)	539
Bse1I	ACTGG	4 cut(s)	219, 481, 701, 889
Bse21I	CCTNAGG	2 cut(s)	330, 927
Bse3DI	GCAATG	1 cut(s)	1015
Bse8I	GATNNNNATC	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	4 cut(s)	87, 88, 238, 428
BseGI	GGATG	3 cut(s)	273, 781, 912
BseJI	GATNNNNATC	1 cut(s)	272
BseLI	CCNNNNNNNGG	6 cut(s)	93, 94, 225, 253, 582, 895
BseMI	GCAATG	1 cut(s)	1015
BseMII	CTCAG	2 cut(s)	344, 918
BseNI	ACTGG	4 cut(s)	219, 481, 701, 889
BseRI	GAGGAG	5 cut(s)	167, 512, 515, 914, 1001
BseXI	GCAGC	2 cut(s)	266, 496
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	2 cut(s)	55, 237
BsiSI	CCGG	1 cut(s)	540
BslFI	GGGAC	2 cut(s)	110, 311
BslI	CCNNNNNNNGG	6 cut(s)	93, 94, 225, 253, 582, 895
BsmFI	GGGAC	2 cut(s)	110, 311
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	2 cut(s)	55, 237
Bsp143I	GATC	6 cut(s)	32, 186, 304, 372, 432, 699
BspACI	CCGC	8 cut(s)	151, 204, 238, 240, 277, 312, 583, 882
BspANI	GGCC	2 cut(s)	55, 237
BspCNI	CTCAG	2 cut(s)	343, 919
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	3 cut(s)	6, 258, 327
BspPI	GGATC	3 cut(s)	27, 440, 707
BsrDI	GCAATG	1 cut(s)	1015
BsrFI	RCCGGY	1 cut(s)	539
BsrI	ACTGG	4 cut(s)	219, 481, 701, 889
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	4 cut(s)	87, 88, 238, 428
BssMI	GATC	6 cut(s)	32, 186, 304, 372, 432, 699
BssNAI	GTATAC	1 cut(s)	894
Bst1107I	GTATAC	1 cut(s)	894
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	145, 350
Bst6I	CTCTTC	4 cut(s)	64, 173, 533, 612
BstAPI	GCANNNNNTGC	2 cut(s)	494, 509
BstC8I	GCNNGC	3 cut(s)	106, 129, 541
BstDEI	CTNAG	2 cut(s)	330, 927
BstDSI	CCRYGG	1 cut(s)	238
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	3 cut(s)	273, 781, 912
BstFNI	CGCG	1 cut(s)	240
BstKTI	GATC	6 cut(s)	35, 189, 307, 375, 435, 702
BstMBI	GATC	6 cut(s)	32, 186, 304, 372, 432, 699
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 509
BstNI	CCWGG	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	87
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	266, 496
BstV2I	GAAGAC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	432
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	432
BstZ17I	GTATAC	1 cut(s)	894
Bsu36I	CCTNAGG	2 cut(s)	330, 927
BsuRI	GGCC	2 cut(s)	55, 237
BtgI	CCRYGG	1 cut(s)	238
BtsCI	GGATG	3 cut(s)	273, 781, 912
BtsIMutI	CAGTG	1 cut(s)	708
Cac8I	GCNNGC	3 cut(s)	106, 129, 541
CaiI	CAGNNNCTG	1 cut(s)	509
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	3 cut(s)	54, 256, 325
Cfr42I	CCGCGG	1 cut(s)	241
Csp6I	GTAC	6 cut(s)	201, 222, 421, 514, 694, 823
CviAII	CATG	3 cut(s)	253, 336, 498
CviQI	GTAC	6 cut(s)	201, 222, 421, 514, 694, 823
DdeI	CTNAG	2 cut(s)	330, 927
DpnI	GATC	6 cut(s)	34, 188, 306, 374, 434, 701
DpnII	GATC	6 cut(s)	32, 186, 304, 372, 432, 699
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	4 cut(s)	64, 173, 533, 612
EarI	CTCTTC	4 cut(s)	64, 173, 533, 612
Eco47I	GGWCC	2 cut(s)	256, 325
Eco57I	CTGAAG	1 cut(s)	732
Eco81I	CCTNAGG	2 cut(s)	330, 927
Eco91I	GGTNACC	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	256, 339, 501
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	2 cut(s)	110, 311
FatI	CATG	3 cut(s)	252, 335, 497
FauNDI	CATATG	1 cut(s)	183
FbaI	TGATCA	2 cut(s)	186, 372
FblI	GTMKAC	1 cut(s)	893
Fnu4HI	GCNGC	5 cut(s)	238, 280, 312, 510, 584
FokI	GGATG	3 cut(s)	260, 788, 919
Fsp4HI	GCNGC	5 cut(s)	238, 280, 312, 510, 584
FspBI	CTAG	2 cut(s)	225, 536
GluI	GCNGC	5 cut(s)	238, 280, 312, 510, 584
HaeIII	GGCC	2 cut(s)	55, 237
HapII	CCGG	1 cut(s)	540
Hin1II	CATG	3 cut(s)	256, 339, 501
HinfI	GANTC	5 cut(s)	319, 400, 415, 454, 1000
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	3 cut(s)	133, 151, 254
Hpy166II	GTNNAC	2 cut(s)	894, 941
Hpy188I	TCNGA	3 cut(s)	292, 399, 432
Hpy188III	TCNNGA	5 cut(s)	18, 365, 469, 659, 784
Hpy8I	GTNNAC	2 cut(s)	894, 941
Hpy99I	CGWCG	2 cut(s)	137, 140
HpyCH4III	ACNGT	2 cut(s)	145, 350
HpyCH4IV	ACGT	2 cut(s)	705, 943
HpyCH4V	TGCA	5 cut(s)	47, 497, 734, 850, 961
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 509
HpyF3I	CTNAG	2 cut(s)	330, 927
HpySE526I	ACGT	2 cut(s)	705, 943
Hsp92II	CATG	3 cut(s)	256, 339, 501
KroI	GCCGGC	1 cut(s)	539
KroNI	GCCGGC	1 cut(s)	541
Ksp22I	TGATCA	2 cut(s)	186, 372
KspI	CCGCGG	1 cut(s)	241
Kzo9I	GATC	6 cut(s)	32, 186, 304, 372, 432, 699
LmnI	GCTCC	2 cut(s)	506, 554
Lsp1109I	GCAGC	2 cut(s)	266, 496
LweI	GCATC	3 cut(s)	721, 766, 922
MaeI	CTAG	2 cut(s)	225, 536
MaeII	ACGT	2 cut(s)	705, 943
MaeIII	GTNAC	4 cut(s)	139, 242, 706, 921
MalI	GATC	6 cut(s)	34, 188, 306, 374, 434, 701
MboI	GATC	6 cut(s)	32, 186, 304, 372, 432, 699
MboII	GAAGA	9 cut(s)	51, 139, 160, 427, 436, 520, 629, 633, 1009
MflI	RGATCY	1 cut(s)	432
MluCI	AATT	5 cut(s)	13, 602, 724, 752, 765
MlyI	GAGTC	2 cut(s)	394, 409
MmeI	TCCRAC	2 cut(s)	315, 532
MroNI	GCCGGC	1 cut(s)	539
MroXI	GAANNNNTTC	1 cut(s)	945
MseI	TTAA	3 cut(s)	360, 720, 756
MspA1I	CMGCKG	2 cut(s)	240, 279
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	494, 509
NaeI	GCCGGC	1 cut(s)	541
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	6 cut(s)	32, 186, 304, 372, 432, 699
NgoMIV	GCCGGC	1 cut(s)	539
NlaIII	CATG	3 cut(s)	256, 339, 501
NlaIV	GGNNCC	3 cut(s)	6, 258, 327
NmuCI	GTSAC	3 cut(s)	139, 242, 706
PasI	CCCWGGG	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 141
PctI	GAATGC	1 cut(s)	340
PdiI	GCCGGC	1 cut(s)	541
PdmI	GAANNNNTTC	1 cut(s)	945
PfeI	GAWTC	3 cut(s)	319, 454, 1000
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	5 cut(s)	239, 281, 313, 511, 585
PleI	GAGTC	2 cut(s)	394, 409
PpsI	GAGTC	2 cut(s)	394, 409
PshBI	ATTAAT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	6, 258, 327
PspPI	GGNCC	3 cut(s)	54, 256, 325
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	432
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	6 cut(s)	202, 223, 422, 515, 695, 824
RsaNI	GTAC	6 cut(s)	201, 222, 421, 514, 694, 823
SacII	CCGCGG	1 cut(s)	241
SaqAI	TTAA	3 cut(s)	360, 720, 756
SatI	GCNGC	5 cut(s)	238, 280, 312, 510, 584
Sau3AI	GATC	6 cut(s)	32, 186, 304, 372, 432, 699
Sau96I	GGNCC	3 cut(s)	54, 256, 325
ScaI	AGTACT	2 cut(s)	223, 695
SchI	GAGTC	2 cut(s)	394, 409
ScrFI	CCNGG	1 cut(s)	89
SfaNI	GCATC	3 cut(s)	721, 766, 922
Sfr303I	CCGCGG	1 cut(s)	241
SgrBI	CCGCGG	1 cut(s)	241
SinI	GGWCC	2 cut(s)	256, 325
Sse9I	AATT	5 cut(s)	13, 602, 724, 752, 765
SsiI	CCGC	8 cut(s)	151, 204, 238, 240, 277, 312, 583, 882
SspMI	CTAG	2 cut(s)	225, 536
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	145, 350
TaiI	ACGT	2 cut(s)	708, 946
TaqI	TCGA	4 cut(s)	19, 65, 364, 626
TasI	AATT	5 cut(s)	13, 602, 724, 752, 765
TatI	WGTACW	2 cut(s)	221, 693
TauI	GCSGC	3 cut(s)	240, 314, 586
TfiI	GAWTC	3 cut(s)	319, 454, 1000
Tru1I	TTAA	3 cut(s)	360, 720, 756
Tru9I	TTAA	3 cut(s)	360, 720, 756
TscAI	CASTG	1 cut(s)	715
TseFI	GTSAC	3 cut(s)	139, 242, 706
TseI	GCWGC	2 cut(s)	279, 509
Tsp45I	GTSAC	3 cut(s)	139, 242, 706
TspDTI	ATGAA	4 cut(s)	51, 938, 1004, 1010
TspGWI	ACGGA	4 cut(s)	408, 703, 821, 911
TspRI	CASTG	1 cut(s)	715
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	2 cut(s)	256, 325
VspI	ATTAAT	1 cut(s)	360
XapI	RAATTY	3 cut(s)	13, 752, 765
XcmI	CCANNNNNNNNNTGG	1 cut(s)	757
XmiI	GTMKAC	1 cut(s)	893
XmnI	GAANNNNTTC	1 cut(s)	945
XspI	CTAG	2 cut(s)	225, 536
ZrmI	AGTACT	2 cut(s)	223, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.