Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2286609 .. 2287100

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTATATCCAACACATCAGTCCCGCCAGTGCCACCACCGTCAACGACGCCCTTTCCCTCCCTCCCGTAACCCATCCCCTCAGCCCCGAGCTCATCAATATATCGGCTTCCGGATTGGCCGACCAAAACCGCGGTTGTGGGAACGATTCGTCGGTCGTTTCGGAGCCGCCGATGACAGTGCCGAGGCGGGGGAGGGTGGGGAGAGTTGTCCCGTCCATGGACGCGGTGGTGAAGGTGTTCTGCGTCCACACTGCGCCGAACTTCTCGCTGCCGTGGCAGAGGAAGAAGCAGTGCAGCTCCAGCAGTAGTGGGTTTGTGATTGGGGGCAGGAGGATTTTGACCAATGCGCATTCGGTGGATCGATCATACCCAGGTCAAGCTCAAGAAACGGGGCTCCGATACCAAGTACTTGGCCACTGTGTTGGCCATTGGAGCCGAATGCGATATCGGTATGCTACAATTTTACATTTGCCTTTTGCAATTGCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

164

Amino Acids

17.84

Weight (kDa)

9.87

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	348
AccII	CGCG	2 cut(s)	132, 224
AccIII	TCCGGA	1 cut(s)	110
AciI	CCGC	6 cut(s)	24, 130, 132, 167, 187, 224
AclWI	GGATC	1 cut(s)	366
AcoI	YGGCCR	3 cut(s)	117, 412, 424
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	188, 217
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	3 cut(s)	91, 297, 380
AluI	AGCT	3 cut(s)	91, 297, 380
Alw21I	GWGCWC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	366
Ama87I	CYCGRG	1 cut(s)	86
Aor13HI	TCCGGA	1 cut(s)	110
AoxI	GGCC	3 cut(s)	117, 412, 424
ApeKI	GCWGC	2 cut(s)	268, 294
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	2 cut(s)	256, 349
AsuHPI	GGTGA	1 cut(s)	241
AvaI	CYCGRG	1 cut(s)	86
BalI	TGGCCA	2 cut(s)	414, 426
BanII	GRGCYC	2 cut(s)	93, 396
Bbv12I	GWGCWC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	255, 306
BccI	CCATC	1 cut(s)	81
BceAI	ACGGC	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	1 cut(s)	372
BisI	GCNGC	3 cut(s)	167, 269, 295
BlsI	GCNGC	3 cut(s)	168, 270, 296
BmcAI	AGTACT	1 cut(s)	408
Bme1390I	CCNGG	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	86
BmiI	GGNNCC	3 cut(s)	165, 395, 434
BmrFI	CCNGG	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	283
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	366
Bsa29I	ATCGAT	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	5 cut(s)	130, 182, 216, 272, 370
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 217
Bse1I	ACTGG	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	372
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	5 cut(s)	130, 182, 216, 272, 370
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	188, 217
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	255, 306
BsgI	GTGCAG	1 cut(s)	313
Bsh1236I	CGCG	2 cut(s)	132, 224
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	119, 414, 426
BshVI	ATCGAT	1 cut(s)	361
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	6, 194
BslI	CCNNNNNNNGG	2 cut(s)	188, 217
BsmFI	GGGAC	2 cut(s)	6, 194
BsmI	GAATGC	2 cut(s)	349, 444
BsnI	GGCC	3 cut(s)	119, 414, 426
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	93, 396
Bsp13I	TCCGGA	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	358, 362
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	6 cut(s)	24, 130, 132, 167, 187, 224
BspANI	GGCC	3 cut(s)	119, 414, 426
BspCNI	CTCAG	1 cut(s)	93
BspDI	ATCGAT	1 cut(s)	361
BspEI	TCCGGA	1 cut(s)	110
BspFNI	CGCG	2 cut(s)	132, 224
BspLI	GGNNCC	3 cut(s)	165, 395, 434
BspPI	GGATC	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	5 cut(s)	130, 182, 216, 272, 370
BssMI	GATC	2 cut(s)	358, 362
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	40, 178, 419
BstACI	GRCGYC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	3 cut(s)	130, 216, 272
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	2 cut(s)	132, 224
BstHHI	GCGC	2 cut(s)	256, 349
BstKTI	GATC	2 cut(s)	361, 365
BstMBI	GATC	2 cut(s)	358, 362
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 300, 432
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstUI	CGCG	2 cut(s)	132, 224
BstV1I	GCAGC	2 cut(s)	255, 306
BstXI	CCANNNNNNTGG	2 cut(s)	410, 422
Bsu15I	ATCGAT	1 cut(s)	361
BsuRI	GGCC	3 cut(s)	119, 414, 426
BsuTUI	ATCGAT	1 cut(s)	361
BtgI	CCRYGG	3 cut(s)	130, 216, 272
BtsCI	GGATG	1 cut(s)	73
BtsI	GCAGTG	2 cut(s)	249, 296
BtsIMutI	CAGTG	5 cut(s)	34, 183, 249, 296, 415
CfoI	GCGC	2 cut(s)	256, 349
Cfr42I	CCGCGG	1 cut(s)	133
ClaI	ATCGAT	1 cut(s)	361
CseI	GACGC	3 cut(s)	56, 230, 232
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	2 cut(s)	217, 486
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	360, 364
DpnII	GATC	2 cut(s)	358, 362
EaeI	YGGCCR	3 cut(s)	117, 412, 424
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	2 cut(s)	93, 396
Eco32I	GATATC	1 cut(s)	446
Eco53kI	GAGCTC	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	370
EcoRV	GATATC	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	2 cut(s)	93, 396
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	220, 489
FaiI	YATR	6 cut(s)	6, 101, 218, 367, 453, 487
FaqI	GGGAC	2 cut(s)	6, 194
FatI	CATG	2 cut(s)	216, 485
FauI	CCCGC	2 cut(s)	31, 180
Fnu4HI	GCNGC	3 cut(s)	167, 269, 295
FokI	GGATG	1 cut(s)	60
FriOI	GRGCYC	2 cut(s)	93, 396
Fsp4HI	GCNGC	3 cut(s)	167, 269, 295
FspAI	RTGCGCAY	1 cut(s)	348
FspI	TGCGCA	1 cut(s)	348
GlaI	GCGC	2 cut(s)	255, 348
GluI	GCNGC	3 cut(s)	167, 269, 295
GsuI	CTGGAG	1 cut(s)	283
HaeIII	GGCC	3 cut(s)	119, 414, 426
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	3 cut(s)	56, 230, 232
HhaI	GCGC	2 cut(s)	256, 349
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	220, 489
Hin6I	GCGC	2 cut(s)	254, 347
HinP1I	GCGC	2 cut(s)	254, 347
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	43, 247
Hpy188I	TCNGA	2 cut(s)	163, 398
Hpy188III	TCNNGA	2 cut(s)	111, 383
Hpy8I	GTNNAC	2 cut(s)	43, 247
Hpy99I	CGWCG	2 cut(s)	50, 154
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	3 cut(s)	40, 178, 419
HpyCH4V	TGCA	3 cut(s)	294, 479, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 300, 432
HpyF3I	CTNAG	1 cut(s)	80
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	220, 489
HspAI	GCGC	2 cut(s)	254, 347
Kpn2I	TCCGGA	1 cut(s)	110
KspI	CCGCGG	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	358, 362
LmnI	GCTCC	4 cut(s)	163, 302, 399, 432
LpnPI	CCDG	6 cut(s)	40, 124, 313, 313, 357, 384
Lsp1109I	GCAGC	2 cut(s)	255, 306
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	360, 364
MboI	GATC	2 cut(s)	358, 362
MboII	GAAGA	1 cut(s)	295
MfeI	CAATTG	1 cut(s)	480
MhlI	GDGCHC	2 cut(s)	93, 396
MlsI	TGGCCA	2 cut(s)	414, 426
MluCI	AATT	2 cut(s)	459, 480
MluNI	TGGCCA	2 cut(s)	414, 426
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	7 cut(s)	68, 72, 89, 177, 186, 273, 324
Mox20I	TGGCCA	2 cut(s)	414, 426
MroI	TCCGGA	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	236
MscI	TGGCCA	2 cut(s)	414, 426
Msp20I	TGGCCA	2 cut(s)	414, 426
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	372
MunI	CAATTG	1 cut(s)	480
Mva1269I	GAATGC	2 cut(s)	349, 444
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	2 cut(s)	132, 224
MwoI	GCNNNNNNNGC	3 cut(s)	274, 300, 432
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	2 cut(s)	358, 362
NlaIII	CATG	2 cut(s)	220, 489
NlaIV	GGNNCC	3 cut(s)	165, 395, 434
NmeAIII	GCCGAG	1 cut(s)	207
NsbI	TGCGCA	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	2 cut(s)	349, 444
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	168, 270, 296
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	3 cut(s)	165, 395, 434
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	93
SacII	CCGCGG	1 cut(s)	133
SatI	GCNGC	3 cut(s)	167, 269, 295
Sau3AI	GATC	2 cut(s)	358, 362
ScaI	AGTACT	1 cut(s)	408
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	2 cut(s)	93, 396
SetI	ASST	5 cut(s)	93, 237, 299, 376, 382
Sfr303I	CCGCGG	1 cut(s)	133
SgrBI	CCGCGG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
Sse9I	AATT	2 cut(s)	459, 480
SsiI	CCGC	6 cut(s)	24, 130, 132, 167, 187, 224
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	40, 178, 419
TaqI	TCGA	1 cut(s)	361
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	2 cut(s)	459, 480
TatI	WGTACW	1 cut(s)	406
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	146
TscAI	CASTG	5 cut(s)	34, 183, 256, 296, 422
TseI	GCWGC	2 cut(s)	268, 294
TspRI	CASTG	5 cut(s)	34, 183, 256, 296, 422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	236
ZrmI	AGTACT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.