pycom17g03910

rRNA methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Reverse (-)
2670544 .. 2671273
730 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGGAACGTGCACAGAAACTTGCAGGTAAAGAACCATTTGATTACATTAGTGTTACCCCTCCATGTATGGAAGTTGACTATGTAGTACTGATGGATCAAATATCAAGTTCGGACCTAGTTGGAGAAGATACCTTTATAGTAGTTGAGTACCCACTAAGGACTGACATGCTGGATTCATGTGGATGCCTTGTGAAGATAACTGATCGATGGTTTGGCAGGACACACTTGGCTATTTATGGACCCAAGTGGGCCCAGAAGAAGAAGAAAGAAAAGTCACTTCGAGGAGCAGCAGTAGAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cons_hypoth95

Protein Analysis

101

Amino Acids

11.34

Weight (kDa)

5.79

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cons_hypoth95 PF03602 4 - 79 8.5e-11 Conserved hypothetical protein 95
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 102
AfaI GTAC 2 cut(s) 87, 149
Alw21I GWGCWC 1 cut(s) 13
Alw44I GTGCAC 1 cut(s) 9
AlwI GGATC 1 cut(s) 102
AoxI GGCC 1 cut(s) 249
ApaI GGGCCC 1 cut(s) 253
ApaLI GTGCAC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 287
AspS9I GGNCC 4 cut(s) 112, 239, 249, 250
AvaII GGWCC 2 cut(s) 112, 239
BaeGI GKGCMC 2 cut(s) 13, 253
BanII GRGCYC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 299
BccI CCATC 2 cut(s) 85, 201
BfaI CTAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 14
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
BmcAI AGTACT 1 cut(s) 87
Bme18I GGWCC 2 cut(s) 112, 239
BmgT120I GGNCC 4 cut(s) 112, 239, 249, 250
BmiI GGNNCC 2 cut(s) 241, 251
BmsI GCATC 1 cut(s) 173
Bsa29I ATCGAT 1 cut(s) 205
BsaXI ACNNNNNCTCC 1 cut(s) 276
BseCI ATCGAT 1 cut(s) 205
BseGI GGATG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 297
BseSI GKGCMC 2 cut(s) 13, 253
BseXI GCAGC 1 cut(s) 299
BshFI GGCC 1 cut(s) 251
BshVI ATCGAT 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 13
BsnI GGCC 1 cut(s) 251
Bsp120I GGGCCC 1 cut(s) 249
Bsp1286I GDGCHC 2 cut(s) 13, 253
Bsp143I GATC 2 cut(s) 94, 202
BspANI GGCC 1 cut(s) 251
BspDI ATCGAT 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 241, 251
BspMI ACCTGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 102
BssMI GATC 2 cut(s) 94, 202
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 188
BstKTI GATC 2 cut(s) 97, 205
BstMBI GATC 2 cut(s) 94, 202
BstNSI RCATGY 1 cut(s) 169
BstSLI GKGCMC 2 cut(s) 13, 253
BstV1I GCAGC 1 cut(s) 299
Bsu15I ATCGAT 1 cut(s) 205
BsuRI GGCC 1 cut(s) 251
BsuTUI ATCGAT 1 cut(s) 205
BtsCI GGATG 1 cut(s) 188
BveI ACCTGC 1 cut(s) 14
Cfr13I GGNCC 4 cut(s) 112, 239, 249, 250
ClaI ATCGAT 1 cut(s) 205
Csp6I GTAC 2 cut(s) 86, 148
CviAII CATG 3 cut(s) 63, 166, 177
CviJI RGCY 2 cut(s) 230, 251
CviKI_1 RGCY 2 cut(s) 230, 251
CviQI GTAC 2 cut(s) 86, 148
DdeI CTNAG 1 cut(s) 155
DpnI GATC 2 cut(s) 96, 204
DpnII GATC 2 cut(s) 94, 202
Eco24I GRGCYC 1 cut(s) 253
Eco47I GGWCC 2 cut(s) 112, 239
EcoT38I GRGCYC 1 cut(s) 253
FaeI CATG 3 cut(s) 66, 169, 180
FaiI YATR 7 cut(s) 64, 68, 81, 137, 167, 178, 237
FatI CATG 3 cut(s) 62, 165, 176
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 1 cut(s) 195
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 116
GluI GCNGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 251
Hin1II CATG 3 cut(s) 66, 169, 180
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 11, 76
Hpy188I TCNGA 1 cut(s) 112
Hpy8I GTNNAC 2 cut(s) 11, 76
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 11, 23
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 3 cut(s) 66, 169, 180
Kzo9I GATC 2 cut(s) 94, 202
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 4 cut(s) 9, 155, 202, 266
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 173
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 2 cut(s) 52, 273
MalI GATC 2 cut(s) 96, 204
MboI GATC 2 cut(s) 94, 202
MboII GAAGA 5 cut(s) 137, 205, 268, 271, 274
MhlI GDGCHC 2 cut(s) 13, 253
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 2 cut(s) 69, 275
MslI CAYNNNNRTG 1 cut(s) 181
NdeII GATC 2 cut(s) 94, 202
NlaIII CATG 3 cut(s) 66, 169, 180
NlaIV GGNNCC 2 cut(s) 241, 251
NmuCI GTSAC 1 cut(s) 273
NspI RCATGY 1 cut(s) 169
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 241, 251
PspOMI GGGCCC 1 cut(s) 249
PspPI GGNCC 4 cut(s) 112, 239, 249, 250
RsaI GTAC 2 cut(s) 87, 149
RsaNI GTAC 2 cut(s) 86, 148
RseI CAYNNNNRTG 1 cut(s) 181
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 2 cut(s) 94, 202
Sau96I GGNCC 4 cut(s) 112, 239, 249, 250
ScaI AGTACT 1 cut(s) 87
SduI GDGCHC 2 cut(s) 13, 253
SetI ASST 4 cut(s) 10, 28, 117, 134
SfaNI GCATC 1 cut(s) 173
SinI GGWCC 2 cut(s) 112, 239
SmiMI CAYNNNNRTG 1 cut(s) 181
SspMI CTAG 1 cut(s) 116
TaiI ACGT 1 cut(s) 10
TaqI TCGA 2 cut(s) 205, 280
TatI WGTACW 1 cut(s) 85
TfiI GAWTC 1 cut(s) 173
TseFI GTSAC 1 cut(s) 273
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 273
TspDTI ATGAA 1 cut(s) 165
VneI GTGCAC 1 cut(s) 9
VpaK11BI GGWCC 2 cut(s) 112, 239
XceI RCATGY 1 cut(s) 169
XspI CTAG 1 cut(s) 116
ZrmI AGTACT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.