Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2751287 .. 2751577

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCCATGTCGTATCTCCATAGCCACGGACGCTTCCACGGGGACATCAAGCCCTGATGGGTCCGTTAAGCTCGCAGATTTTTGGGTCTCTGCTTCTTTCTACGACGCCGATTTTTCAACTGGGGTAAACGACACTTCTACAAGGCCGTATTGGGTGGCGCCTGGTGGAGGTGGATGCAAGGCAGATATCTGGGCATTTGGGGTCACGACGCTGGAATTGGCTCTGGGCGGCCCTCCCCTGTCTGGCTTGCCAATGTTATTAGGGACTCAAATTCTGAGAACAAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010119 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

97

Amino Acids

9.97

Weight (kDa)

4.61

Isoelectric Point (pI)

25.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	157
AciI	CCGC	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	270
AcyI	GRCGYC	2 cut(s)	105, 158
AfiI	CCNNNNNNNGG	2 cut(s)	167, 242
AgsI	TTSAA	1 cut(s)	117
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	91
AoxI	GGCC	2 cut(s)	143, 229
ApoI	RAATTY	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	60, 230
AvaII	GGWCC	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	157
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	91
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	60, 230
BmiI	GGNNCC	2 cut(s)	61, 159
BmrFI	CCNGG	1 cut(s)	162
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	129
BsaHI	GRCGYC	2 cut(s)	105, 158
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	2 cut(s)	24, 36
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 242
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	24, 36
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	167, 242
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	145, 231
BshNI	GGYRCC	1 cut(s)	157
BslFI	GGGAC	2 cut(s)	55, 277
BslI	CCNNNNNNNGG	2 cut(s)	167, 242
BsmAI	GTCTC	1 cut(s)	91
BsmFI	GGGAC	2 cut(s)	55, 277
BsnI	GGCC	2 cut(s)	145, 231
Bso31I	GGTCTC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	2 cut(s)	145, 231
BspCNI	CTCAG	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	61, 159
BspT107I	GGYRCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	24, 36
BssNI	GRCGYC	2 cut(s)	105, 158
Bst2UI	CCWGG	1 cut(s)	162
BstACI	GRCGYC	2 cut(s)	105, 158
BstC8I	GCNNGC	2 cut(s)	72, 248
BstDEI	CTNAG	1 cut(s)	275
BstDSI	CCRYGG	2 cut(s)	24, 36
BstENI	CCTNNNNNAGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	145, 231
BtgI	CCRYGG	2 cut(s)	24, 36
BtsCI	GGATG	1 cut(s)	179
Cac8I	GCNNGC	2 cut(s)	72, 248
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	60, 230
CseI	GACGC	3 cut(s)	38, 113, 217
CviAII	CATG	1 cut(s)	6
CviJI	RGCY	7 cut(s)	23, 51, 70, 145, 221, 231, 246
CviKI_1	RGCY	7 cut(s)	23, 51, 70, 145, 221, 231, 246
DdeI	CTNAG	1 cut(s)	275
DinI	GGCGCC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	91
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	160
EcoRV	GATATC	1 cut(s)	187
EgeI	GGCGCC	1 cut(s)	159
EheI	GGCGCC	1 cut(s)	159
FaeI	CATG	1 cut(s)	9
FaiI	YATR	2 cut(s)	7, 20
FaqI	GGGAC	2 cut(s)	55, 277
FatI	CATG	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	229
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	229
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	145, 231
HgaI	GACGC	3 cut(s)	38, 113, 217
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	2 cut(s)	105, 158
Hin1II	CATG	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	2 cut(s)	107, 211
HpyCH4V	TGCA	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	275
Hsp92I	GRCGYC	2 cut(s)	105, 158
Hsp92II	CATG	1 cut(s)	9
HspAI	GCGC	1 cut(s)	158
KasI	GGCGCC	1 cut(s)	157
LpnPI	CCDG	9 cut(s)	66, 105, 147, 174, 175, 197, 209, 228, 251
LweI	GCATC	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	202
MluCI	AATT	2 cut(s)	215, 270
Mly113I	GGCGCC	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	2 cut(s)	161, 243
MseI	TTAA	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	29
NarI	GGCGCC	1 cut(s)	158
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	2 cut(s)	61, 159
NmuCI	GTSAC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	1 cut(s)	259
PluTI	GGCGCC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	61, 159
PspPI	GGNCC	2 cut(s)	60, 230
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	229
Sau96I	GGNCC	2 cut(s)	60, 230
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	2 cut(s)	72, 172
SfaNI	GCATC	1 cut(s)	164
SfoI	GGCGCC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	60
Sse9I	AATT	2 cut(s)	215, 270
SsiI	CCGC	1 cut(s)	228
SspDI	GGCGCC	1 cut(s)	157
StyD4I	CCNGG	1 cut(s)	160
TasI	AATT	2 cut(s)	215, 270
TauI	GCSGC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspGWI	ACGGA	2 cut(s)	41, 52
VpaK11BI	GGWCC	1 cut(s)	60
XagI	CCTNNNNNAGG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.