pycom17g04510

Belongs to the cullin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
3077570 .. 3078409
840 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 840 bp
ATGATGCTTTTCCGTTATCTTCAAGAGAAAGACGTCTTTGAAAAGTATTACAAGCAGCACTTGGCAAAGAGGCTTCTTTCTGGGAAGACTGTTTCTGATGATGCAGAAAGAAGTCTGATTGTTAAGCTCAAAACAGAGTGCGGATATCAGTTTACTTCTAAATTGGAGGGTATGTTTACTGATATGAAGACCTCTCAGGATACGATGCGTGGATTCTACTCAACTGTGGGACCTCAGTTAGGCGATAGCCCAACGCTAACTGTCCAGGTCCTCACCACAGGTTCATGGCCTACTCAACCAAGTGCCACGTGCAACCTTCCAGCAGAAATTTTGTGGGTATGTGAGACGTTCAAGAATTACTATCTTGGGACCCATAGTGGCCGGAGATTGTCGTGGCAAACTAATATGGGCACAGCTGATTTGAAAGCGACTTTTGGAAAGGGCCAGAAGCATGAGCTGAATGTTTCCACATATCAGATGTGTGTACTGATGCTATTTAACAACACTGACCGGTTGACATATAAGGAAATTGAGCAGGCCACAGAGATACCAGCCATTGACTTGAAGAGGTGCCTGCAATCTCTGGCCTGTGTTAAGGGGAAGAATGTTCTTCGGAAGGAGCCAATGAGCAAGGACATAGCTGAGGAGGATGCCTTCTTCATTAATGACAAGTTCACAAGCAAGTTCTTCAAGGTAAAGATTGGAACTGTGGTTGCGCAAAGGGAGTCTGAACCAGAAAATCTAGAAACCCGACAGAGAGTAGAGGAAGACAGGAAGCCCCAGATTGAGGCAGCAATTGTGAGGATCGATGAAGTCAAGGCGGTTCCTGGATCACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 ko04340 ko04341 map04120 map04340 map04341
Pfam Domains
Protein Families
Cullin Cullin_Nedd8

Protein Analysis

280

Amino Acids

31.85

Weight (kDa)

8.4

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 1 - 69 2.9e-35 Cullin alpha solenoid domain
Cullin_AB PF26557 90 - 225 2e-51 Cullin alpha+beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 36
Acc16I TGCGCA 1 cut(s) 717
AccB1I GGYRCC 1 cut(s) 570
AciI CCGC 2 cut(s) 141, 821
AclWI GGATC 2 cut(s) 812, 838
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 1 cut(s) 327
AcvI CACGTG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 486
AfiI CCNNNNNNNGG 2 cut(s) 239, 787
AgeI ACCGGT 1 cut(s) 510
AgsI TTSAA 6 cut(s) 23, 41, 352, 424, 565, 691
AjnI CCWGG 2 cut(s) 264, 826
AluBI AGCT 4 cut(s) 127, 416, 457, 641
AluI AGCT 4 cut(s) 127, 416, 457, 641
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 2 cut(s) 812, 838
AoxI GGCC 5 cut(s) 287, 379, 442, 537, 585
ApeKI GCWGC 2 cut(s) 55, 791
ApoI RAATTY 1 cut(s) 327
AseI ATTAAT 1 cut(s) 663
AsiGI ACCGGT 1 cut(s) 510
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 4 cut(s) 230, 268, 369, 442
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 3 cut(s) 230, 268, 369
BaeGI GKGCMC 1 cut(s) 413
BanI GGYRCC 1 cut(s) 570
BbrPI CACGTG 1 cut(s) 309
BbsI GAAGAC 3 cut(s) 92, 194, 774
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 2 cut(s) 67, 803
BciT130I CCWGG 2 cut(s) 266, 828
BciVI GTATCC 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 743
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 2 cut(s) 56, 792
BlsI GCNGC 2 cut(s) 57, 793
Bme1390I CCNGG 2 cut(s) 266, 828
Bme18I GGWCC 3 cut(s) 230, 268, 369
BmgT120I GGNCC 4 cut(s) 230, 268, 369, 442
BmiI GGNNCC 6 cut(s) 231, 370, 371, 572, 621, 825
BmrFI CCNGG 2 cut(s) 266, 828
BmsI GCATC 4 cut(s) 91, 195, 480, 640
BpiI GAAGAC 3 cut(s) 92, 194, 774
Bpu10I CCTNAGC 1 cut(s) 642
Bsa29I ATCGAT 1 cut(s) 807
BsaAI YACGTR 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 510
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 787
Bse118I RCCGGY 1 cut(s) 510
BseBI CCWGG 2 cut(s) 266, 828
BseCI ATCGAT 1 cut(s) 807
BseGI GGATG 1 cut(s) 655
BseLI CCNNNNNNNGG 2 cut(s) 239, 787
BseMII CTCAG 3 cut(s) 209, 248, 633
BseRI GAGGAG 1 cut(s) 659
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 2 cut(s) 67, 803
BshFI GGCC 5 cut(s) 289, 381, 444, 539, 587
BshNI GGYRCC 1 cut(s) 570
BshTI ACCGGT 1 cut(s) 510
BshVI ATCGAT 1 cut(s) 807
BsiSI CCGG 2 cut(s) 382, 511
BslFI GGGAC 2 cut(s) 243, 382
BslI CCNNNNNNNGG 2 cut(s) 239, 787
BsmAI GTCTC 1 cut(s) 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 2 cut(s) 243, 382
BsnI GGCC 5 cut(s) 289, 381, 444, 539, 587
Bsp1286I GDGCHC 1 cut(s) 413
Bsp143I GATC 2 cut(s) 804, 830
BspACI CCGC 2 cut(s) 141, 821
BspANI GGCC 5 cut(s) 289, 381, 444, 539, 587
BspCNI CTCAG 3 cut(s) 208, 247, 634
BspDI ATCGAT 1 cut(s) 807
BspLI GGNNCC 6 cut(s) 231, 370, 371, 572, 621, 825
BspPI GGATC 2 cut(s) 812, 838
BspT107I GGYRCC 1 cut(s) 570
BsrFI RCCGGY 1 cut(s) 510
BssAI RCCGGY 1 cut(s) 510
BssMI GATC 2 cut(s) 804, 830
BssNI GRCGYC 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 266, 828
Bst4CI ACNGT 4 cut(s) 91, 226, 262, 709
Bst6I CTCTTC 1 cut(s) 560
BstACI GRCGYC 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 537, 575
BstDEI CTNAG 3 cut(s) 195, 234, 642
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 655
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 2 cut(s) 807, 833
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 2 cut(s) 804, 830
BstNI CCWGG 2 cut(s) 266, 828
BstSCI CCNGG 2 cut(s) 264, 826
BstSLI GKGCMC 1 cut(s) 413
BstV1I GCAGC 2 cut(s) 67, 803
BstV2I GAAGAC 3 cut(s) 92, 194, 774
Bsu15I ATCGAT 1 cut(s) 807
BsuI GTATCC 1 cut(s) 193
BsuRI GGCC 5 cut(s) 289, 381, 444, 539, 587
BsuTUI ATCGAT 1 cut(s) 807
BtsCI GGATG 1 cut(s) 655
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 2 cut(s) 537, 575
CfoI GCGC 1 cut(s) 718
Cfr10I RCCGGY 1 cut(s) 510
Cfr13I GGNCC 4 cut(s) 230, 268, 369, 442
ClaI ATCGAT 1 cut(s) 807
Csp6I GTAC 1 cut(s) 485
CspAI ACCGGT 1 cut(s) 510
CviAII CATG 2 cut(s) 285, 452
CviQI GTAC 1 cut(s) 485
DdeI CTNAG 3 cut(s) 195, 234, 642
DpnI GATC 2 cut(s) 806, 832
DpnII GATC 2 cut(s) 804, 830
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
Eco32I GATATC 1 cut(s) 146
Eco47I GGWCC 3 cut(s) 230, 268, 369
Eco72I CACGTG 1 cut(s) 309
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 3 cut(s) 230, 268, 369
EcoRII CCWGG 2 cut(s) 264, 826
EcoRV GATATC 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 2 cut(s) 288, 455
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 2 cut(s) 243, 382
FatI CATG 2 cut(s) 284, 451
Fnu4HI GCNGC 2 cut(s) 56, 792
FokI GGATG 1 cut(s) 662
Fsp4HI GCNGC 2 cut(s) 56, 792
FspBI CTAG 1 cut(s) 743
FspI TGCGCA 1 cut(s) 717
GlaI GCGC 1 cut(s) 717
GluI GCNGC 2 cut(s) 56, 792
HaeIII GGCC 5 cut(s) 289, 381, 444, 539, 587
HapII CCGG 2 cut(s) 382, 511
HhaI GCGC 1 cut(s) 718
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 2 cut(s) 288, 455
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 2 cut(s) 213, 725
HpaII CCGG 2 cut(s) 382, 511
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 5 cut(s) 153, 177, 485, 516, 675
Hpy188I TCNGA 5 cut(s) 97, 117, 477, 615, 730
Hpy188III TCNNGA 4 cut(s) 23, 197, 352, 743
Hpy8I GTNNAC 5 cut(s) 153, 177, 485, 516, 675
HpyAV CCTTC 3 cut(s) 326, 610, 664
HpyCH4III ACNGT 4 cut(s) 91, 226, 262, 709
HpyCH4IV ACGT 3 cut(s) 33, 308, 347
HpyCH4V TGCA 3 cut(s) 104, 312, 577
HpyF3I CTNAG 3 cut(s) 195, 234, 642
HpySE526I ACGT 3 cut(s) 33, 308, 347
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 2 cut(s) 288, 455
HspAI GCGC 1 cut(s) 716
KflI GGGWCCC 1 cut(s) 369
Kzo9I GATC 2 cut(s) 804, 830
LmnI GCTCC 1 cut(s) 619
Lsp1109I GCAGC 2 cut(s) 67, 803
LweI GCATC 4 cut(s) 91, 195, 480, 640
MaeI CTAG 1 cut(s) 743
MaeII ACGT 3 cut(s) 33, 308, 347
MalI GATC 2 cut(s) 806, 832
MboI GATC 2 cut(s) 804, 830
MboII GAAGA 9 cut(s) 11, 97, 199, 577, 602, 613, 649, 679, 779
MfeI CAATTG 1 cut(s) 795
MhlI GDGCHC 1 cut(s) 413
MluCI AATT 5 cut(s) 161, 327, 355, 528, 795
MlyI GAGTC 1 cut(s) 734
MseI TTAA 4 cut(s) 123, 498, 594, 663
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 2 cut(s) 382, 511
MspR9I CCNGG 2 cut(s) 266, 828
MunI CAATTG 1 cut(s) 795
MvaI CCWGG 2 cut(s) 266, 828
NdeII GATC 2 cut(s) 804, 830
NlaIII CATG 2 cut(s) 288, 455
NlaIV GGNNCC 6 cut(s) 231, 370, 371, 572, 621, 825
NsbI TGCGCA 1 cut(s) 717
PfeI GAWTC 1 cut(s) 213
PfoI TCCNGGA 1 cut(s) 826
PinAI ACCGGT 1 cut(s) 510
PkrI GCNGC 2 cut(s) 57, 793
PleI GAGTC 1 cut(s) 733
PmaCI CACGTG 1 cut(s) 309
PmlI CACGTG 1 cut(s) 309
PpsI GAGTC 1 cut(s) 733
Ppu21I YACGTR 1 cut(s) 309
PpuMI RGGWCCY 3 cut(s) 230, 268, 369
PshBI ATTAAT 1 cut(s) 663
Psp5II RGGWCCY 3 cut(s) 230, 268, 369
Psp6I CCWGG 2 cut(s) 264, 826
PspCI CACGTG 1 cut(s) 309
PspGI CCWGG 2 cut(s) 264, 826
PspN4I GGNNCC 6 cut(s) 231, 370, 371, 572, 621, 825
PspPI GGNCC 4 cut(s) 230, 268, 369, 442
PspPPI RGGWCCY 3 cut(s) 230, 268, 369
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 1 cut(s) 486
RsaNI GTAC 1 cut(s) 485
SaqAI TTAA 4 cut(s) 123, 498, 594, 663
SatI GCNGC 2 cut(s) 56, 792
Sau3AI GATC 2 cut(s) 804, 830
Sau96I GGNCC 4 cut(s) 230, 268, 369, 442
SchI GAGTC 1 cut(s) 734
ScrFI CCNGG 2 cut(s) 266, 828
SduI GDGCHC 1 cut(s) 413
SfaNI GCATC 4 cut(s) 91, 195, 480, 640
SinI GGWCC 3 cut(s) 230, 268, 369
Sse9I AATT 5 cut(s) 161, 327, 355, 528, 795
SsiI CCGC 2 cut(s) 141, 821
SspMI CTAG 1 cut(s) 743
StyD4I CCNGG 2 cut(s) 264, 826
TaaI ACNGT 4 cut(s) 91, 226, 262, 709
TaiI ACGT 3 cut(s) 36, 311, 350
TaqI TCGA 1 cut(s) 807
TasI AATT 5 cut(s) 161, 327, 355, 528, 795
TatI WGTACW 1 cut(s) 484
TfiI GAWTC 1 cut(s) 213
Tru1I TTAA 4 cut(s) 123, 498, 594, 663
Tru9I TTAA 4 cut(s) 123, 498, 594, 663
TscAI CASTG 1 cut(s) 511
TseI GCWGC 2 cut(s) 55, 791
TspDTI ATGAA 4 cut(s) 200, 273, 649, 825
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 3 cut(s) 230, 268, 369
VspI ATTAAT 1 cut(s) 663
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 1 cut(s) 327
XbaI TCTAGA 1 cut(s) 742
XspI CTAG 1 cut(s) 743
ZraI GACGTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.