pycom17g05910

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Reverse (-)
4162886 .. 4163872
987 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
ATGTTTGTATCTTTTAGTTCTTGTTTAGAATGGAGGTGCGCGTACCCCCTGCTTGAAGAGGCCGGTTTGGAGGCTTGGGCCGTTGATGTCCTTGGATGGGGCTTCTCTGATTTAGGTTCCTTTACCTGCCTTTTCCTCATTGTTCTTTTTTTTTTTTCCCAGCTAGATATGATTATATACTTCCAGTCTCTTTATTGCAACAAGTGCTTAATGTTAATCGGTTTAATCATTTTTTATCTGTTATCTATACTAGAAAGGTGTCCACCATGCAGCTTTTGGAAGTCCTACATCAGAAGACCGATGGTATTAGTTGGACCAAGCCTTGGTGGTTCTGTTGCAATTGACTTTGCATACCACTATCCAGTAGCTGTGAGCGTTGAAAAGCTGGTTTTAATCAATGCAAACGTCTACGCAGAAGGCATCGGAGACATGGCAAAGTTACCTAAAGTTGTGGCCTACGCTGGGGTTGGTGTCCCCTTACAGGGCACCCCTCTACGCTTCTACGCTAATATGCTGGCCTTCAACAACATTTCATTAACTACAACCTTTGATTGGACTAATGTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

190

Amino Acids

21.21

Weight (kDa)

5.3

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 485
AccB7I CCANNNNNTGG 1 cut(s) 323
AccI GTMKAC 1 cut(s) 408
AccII CGCG 1 cut(s) 41
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 6 cut(s) 97, 323, 462, 481, 482, 552
AgsI TTSAA 3 cut(s) 56, 380, 523
AluBI AGCT 4 cut(s) 163, 273, 368, 385
AluI AGCT 4 cut(s) 163, 273, 368, 385
Alw26I GTCTC 2 cut(s) 192, 420
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 4 cut(s) 60, 78, 453, 516
ApeKI GCWGC 1 cut(s) 270
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 78, 314
AvaII GGWCC 1 cut(s) 314
BaeGI GKGCMC 1 cut(s) 488
BanI GGYRCC 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 282
BccI CCATC 2 cut(s) 90, 295
BceAI ACGGC 1 cut(s) 65
BcoDI GTCTC 2 cut(s) 192, 420
BfaI CTAG 2 cut(s) 164, 251
BfuAI ACCTGC 1 cut(s) 134
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 2 cut(s) 78, 314
BmiI GGNNCC 2 cut(s) 118, 487
BmsI GCATC 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 301
BsaJI CCNNGG 2 cut(s) 91, 322
Bsc4I CCNNNNNNNGG 6 cut(s) 97, 323, 462, 481, 482, 552
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 184, 362
BseDI CCNNGG 2 cut(s) 91, 322
BseGI GGATG 1 cut(s) 101
BseLI CCNNNNNNNGG 6 cut(s) 97, 323, 462, 481, 482, 552
BseNI ACTGG 2 cut(s) 184, 362
BseSI GKGCMC 1 cut(s) 488
BseXI GCAGC 1 cut(s) 282
BseYI CCCAGC 2 cut(s) 159, 461
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 4 cut(s) 62, 80, 455, 518
BshNI GGYRCC 1 cut(s) 485
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 6 cut(s) 97, 323, 462, 481, 482, 552
BsmAI GTCTC 2 cut(s) 192, 420
BsmFI GGGAC 1 cut(s) 458
BsnI GGCC 4 cut(s) 62, 80, 455, 518
Bsp1286I GDGCHC 1 cut(s) 488
BspANI GGCC 4 cut(s) 62, 80, 455, 518
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 2 cut(s) 118, 487
BspMI ACCTGC 1 cut(s) 134
BspT107I GGYRCC 1 cut(s) 485
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 2 cut(s) 184, 362
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 91, 322
BssT1I CCWWGG 2 cut(s) 91, 322
Bst6I CTCTTC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 516
BstF5I GGATG 1 cut(s) 101
BstFNI CGCG 1 cut(s) 41
BstHHI GCGC 1 cut(s) 41
BstMAI GTCTC 2 cut(s) 192, 420
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 488
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 282
BstV2I GAAGAC 1 cut(s) 301
BsuRI GGCC 4 cut(s) 62, 80, 455, 518
BtsCI GGATG 1 cut(s) 101
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 516
CaiI CAGNNNCTG 1 cut(s) 368
CfoI GCGC 1 cut(s) 41
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 78, 314
Csp6I GTAC 1 cut(s) 43
CviAII CATG 2 cut(s) 267, 430
CviQI GTAC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 91, 322
Eco47I GGWCC 1 cut(s) 314
EcoT14I CCWWGG 2 cut(s) 91, 322
ErhI CCWWGG 2 cut(s) 91, 322
FaeI CATG 2 cut(s) 270, 433
FaiI YATR 8 cut(s) 170, 176, 178, 248, 268, 352, 431, 512
FaqI GGGAC 1 cut(s) 458
FatI CATG 2 cut(s) 266, 429
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 1 cut(s) 271
FokI GGATG 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 271
FspBI CTAG 2 cut(s) 164, 251
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 271
GsaI CCCAGC 2 cut(s) 163, 465
HaeIII GGCC 4 cut(s) 62, 80, 455, 518
HapII CCGG 1 cut(s) 63
HhaI GCGC 1 cut(s) 41
Hin1II CATG 2 cut(s) 270, 433
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HpaII CCGG 1 cut(s) 63
Hpy166II GTNNAC 2 cut(s) 263, 409
Hpy188I TCNGA 3 cut(s) 109, 293, 425
Hpy8I GTNNAC 2 cut(s) 263, 409
HpyAV CCTTC 2 cut(s) 410, 529
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 5 cut(s) 198, 270, 338, 350, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 2 cut(s) 270, 433
HspAI GCGC 1 cut(s) 39
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 429
MaeI CTAG 2 cut(s) 164, 251
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 438
MboII GAAGA 2 cut(s) 68, 306
MfeI CAATTG 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 488
MluCI AATT 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 5 cut(s) 27, 52, 64, 146, 501
MseI TTAA 5 cut(s) 209, 215, 224, 392, 536
MspI CCGG 1 cut(s) 63
MunI CAATTG 1 cut(s) 339
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 204
NlaIII CATG 2 cut(s) 270, 433
NlaIV GGNNCC 2 cut(s) 118, 487
PflMI CCANNNNNTGG 1 cut(s) 323
PkrI GCNGC 1 cut(s) 272
PspFI CCCAGC 2 cut(s) 159, 461
PspN4I GGNNCC 2 cut(s) 118, 487
PspPI GGNCC 2 cut(s) 78, 314
PstNI CAGNNNCTG 1 cut(s) 368
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 5 cut(s) 209, 215, 224, 392, 536
SatI GCNGC 1 cut(s) 271
Sau96I GGNCC 2 cut(s) 78, 314
SduI GDGCHC 1 cut(s) 488
SfaNI GCATC 1 cut(s) 429
SinI GGWCC 1 cut(s) 314
Sse9I AATT 1 cut(s) 339
SspMI CTAG 2 cut(s) 164, 251
StyI CCWWGG 2 cut(s) 91, 322
TaiI ACGT 1 cut(s) 408
TaqII GACCGA 1 cut(s) 313
TasI AATT 1 cut(s) 339
Tru1I TTAA 5 cut(s) 209, 215, 224, 392, 536
Tru9I TTAA 5 cut(s) 209, 215, 224, 392, 536
TseI GCWGC 1 cut(s) 270
TspDTI ATGAA 1 cut(s) 522
Van91I CCANNNNNTGG 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 273
XmiI GTMKAC 1 cut(s) 408
XspI CTAG 2 cut(s) 164, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.