Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4990200 .. 4990832

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCGGTGGCCGTGCGAGGCAGCCGTGGCGGTGGCGGGTCGGGTTTTGGCGGGTTCAGCCTCCGGAGCTTCTTCTCATATCGGATCTTTGTCTCGGCTATGTTCTCTCTGCTCTTCATTGCCACGCTCTCTGTTATCCTCACCACAAATCCTTCGACTCCACACCACGACTCTGCACTTCCAACAACTGGAAACGCGTACATGCGTAGGACGTTTTTAGCTTTAAATTCTGATCCATTGAAAACAAGATTAGATTTGATATATAAGCAAGCCAATCGATCATGTTACTCTGGTGAATGCTTACGCGGCTTACGCCAGGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

109

Amino Acids

11.77

Weight (kDa)

10.27

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccII	CGCG	2 cut(s)	197, 306
AccIII	TCCGGA	1 cut(s)	63
AciI	CCGC	5 cut(s)	5, 30, 36, 51, 306
AclWI	GGATC	2 cut(s)	92, 227
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	226
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	3 cut(s)	69, 221, 323
AluI	AGCT	3 cut(s)	69, 221, 323
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	2 cut(s)	92, 227
Aor13HI	TCCGGA	1 cut(s)	63
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	133, 305
BbvI	GCAGC	1 cut(s)	33
BceAI	ACGGC	1 cut(s)	9
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	97
BisI	GCNGC	2 cut(s)	22, 307
BlsI	GCNGC	2 cut(s)	23, 308
Bme1390I	CCNGG	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	25
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	117
BseAI	TCCGGA	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	317
BseCI	ATCGAT	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	33
BsgI	GTGCAG	1 cut(s)	159
Bsh1236I	CGCG	2 cut(s)	197, 306
BshFI	GGCC	1 cut(s)	11
BshVI	ATCGAT	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	11
Bsp13I	TCCGGA	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	84, 232, 278
BspACI	CCGC	5 cut(s)	5, 30, 36, 51, 306
BspANI	GGCC	1 cut(s)	11
BspDI	ATCGAT	1 cut(s)	277
BspEI	TCCGGA	1 cut(s)	63
BspFNI	CGCG	2 cut(s)	197, 306
BspPI	GGATC	2 cut(s)	92, 227
BspQI	GCTCTTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	3 cut(s)	84, 232, 278
Bst2UI	CCWGG	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	25
BstFNI	CGCG	2 cut(s)	197, 306
BstKTI	GATC	3 cut(s)	87, 235, 281
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	3 cut(s)	84, 232, 278
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 57, 66, 306, 312
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	315
BstUI	CGCG	2 cut(s)	197, 306
BstV1I	GCAGC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
Bsu15I	ATCGAT	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	11
BsuTUI	ATCGAT	1 cut(s)	277
BtgI	CCRYGG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	270
ClaI	ATCGAT	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	2 cut(s)	202, 282
CviJI	RGCY	9 cut(s)	11, 24, 60, 69, 98, 221, 272, 309, 323
CviKI_1	RGCY	9 cut(s)	11, 24, 60, 69, 98, 221, 272, 309, 323
CviQI	GTAC	1 cut(s)	199
DpnI	GATC	3 cut(s)	86, 234, 280
DpnII	GATC	3 cut(s)	84, 232, 278
DraI	TTTAAA	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	205, 285
FaiI	YATR	6 cut(s)	79, 101, 203, 262, 264, 283
FatI	CATG	2 cut(s)	201, 281
FauI	CCCGC	2 cut(s)	29, 44
Fnu4HI	GCNGC	2 cut(s)	22, 307
Fsp4HI	GCNGC	2 cut(s)	22, 307
GluI	GCNGC	2 cut(s)	22, 307
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	64
Hin1II	CATG	2 cut(s)	205, 285
HindIII	AAGCTT	1 cut(s)	321
HinfI	GANTC	2 cut(s)	157, 170
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	2 cut(s)	133, 305
Hpy188I	TCNGA	2 cut(s)	84, 232
Hpy188III	TCNNGA	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 57, 66, 306, 312
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	205, 285
Kpn2I	TCCGGA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	84, 232, 278
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	4 cut(s)	77, 174, 276, 302
Lsp1109I	GCAGC	1 cut(s)	33
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	3 cut(s)	86, 234, 280
MboI	GATC	3 cut(s)	84, 232, 278
MboII	GAAGA	2 cut(s)	64, 106
MflI	RGATCY	1 cut(s)	84
MluCI	AATT	1 cut(s)	226
MluI	ACGCGT	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	151, 164
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	3 cut(s)	11, 71, 149
MroI	TCCGGA	1 cut(s)	63
MseI	TTAA	2 cut(s)	224, 325
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	2 cut(s)	197, 306
MwoI	GCNNNNNNNGC	5 cut(s)	27, 57, 66, 306, 312
NdeII	GATC	3 cut(s)	84, 232, 278
NlaIII	CATG	2 cut(s)	205, 285
NmeAIII	GCCGAG	1 cut(s)	74
NspI	RCATGY	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	119
PctI	GAATGC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	23, 308
PleI	GAGTC	2 cut(s)	151, 164
PpsI	GAGTC	2 cut(s)	151, 164
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	224, 325
SatI	GCNGC	2 cut(s)	22, 307
Sau3AI	GATC	3 cut(s)	84, 232, 278
SchI	GAGTC	2 cut(s)	151, 164
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	4 cut(s)	71, 215, 223, 325
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	5 cut(s)	5, 30, 36, 51, 306
StyD4I	CCNGG	1 cut(s)	315
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	155, 277
TasI	AATT	1 cut(s)	226
TauI	GCSGC	1 cut(s)	309
Tru1I	TTAA	2 cut(s)	224, 325
Tru9I	TTAA	2 cut(s)	224, 325
TseI	GCWGC	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.