Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5537050 .. 5538071

Gene Structure 1022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGCGGTCAAGACTGCATTGGCATTGCAAAAACTGGCTCAGGCAAAACTATTGCATATGTGCTGCCAATGCTGAGGCATATCAAGGACCATCCACCTGTGGTACTTGTGCAGCAGATTCACAGTGTTATTAACAAGTTTGCCAAGGCACTGAATCTCAGGTTTGTGCCTGTATATGGAGGTTCTGGTATTGCCCAGCTGACCGGTGAGTTGAAGCTGGGTGCTGCATTTGTCGTCTGTACCTCCGGTAGGATGATTGACATACTTTGTACAAATGGAGGGAGGATAACAAACCTGCAGAGAACCCCTGTCTCTGCTGCCCAAATGCTTCCCAATGGTGGATTACCTGTTTCTTTTTCAGGTGTCCTTGGTGGTGTAACTTTACCAGGAACAGTAGCCGTTGTGCCTGGGATGGGTCTGGCACTTGTTGGACACGAGGGGGCAGCTCGGGCAGCAGCAATTGCAGTTGCCATGAATTTGAAGCATAACCTGGCAAAAATTCAAGCTGATGCAATGCCCAAGCACTTTGAAGCAGAGTTGAAAATAAATGATATTCCCCAGAATGCCCGATGGAAGGTTACCCACAAGGAAACTTTGGGCCCTATATCAGACTTGACTGGAGCTGCCATTACTATCAGGGGTCAATATTTCCCGGCAGGCAAGGTTCCTACTGAACAATCTGTCAAGAGAGGTAAAGCAGAACTAAAACGCAAGTTGGAAGAAATCATGAATCAGGCATTATCACTTCCTGGGGGCGCTCAGCCACGCAGATATCAATTATATAAGAGAGAACGTGATTCCTACCTACTTTTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

273

Amino Acids

29.02

Weight (kDa)

9.94

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	2 - 92	1.2e-13	DEAD/DEAH box helicase
KH_12	PF23469	177 - 225	9.9e-08	KH-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	303
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	1 cut(s)	6
AcsI	RAATTY	2 cut(s)	475, 498
AfaI	GTAC	3 cut(s)	105, 241, 271
AfiI	CCNNNNNNNGG	5 cut(s)	176, 249, 338, 413, 574
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	5 cut(s)	214, 481, 503, 530, 541
AjnI	CCWGG	4 cut(s)	385, 406, 489, 748
AluBI	AGCT	5 cut(s)	199, 217, 446, 506, 623
AluI	AGCT	5 cut(s)	199, 217, 446, 506, 623
Alw26I	GTCTC	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	1 cut(s)	598
ApaI	GGGCCC	1 cut(s)	602
ApeKI	GCWGC	8 cut(s)	64, 112, 224, 317, 443, 452, 455, 623
ApoI	RAATTY	2 cut(s)	475, 498
AsiGI	ACCGGT	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	758
AspS9I	GGNCC	3 cut(s)	88, 598, 599
AsuC2I	CCSGG	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	602
BanII	GRGCYC	1 cut(s)	602
BauI	CACGAG	1 cut(s)	434
BbvCI	CCTCAGC	1 cut(s)	74
BbvI	GCAGC	8 cut(s)	51, 124, 211, 304, 455, 464, 467, 610
BccI	CCATC	3 cut(s)	99, 406, 564
BceAI	ACGGC	1 cut(s)	383
BciT130I	CCWGG	4 cut(s)	387, 408, 491, 750
BcnI	CCSGG	1 cut(s)	653
BcoDI	GTCTC	1 cut(s)	316
BfmI	CTRYAG	1 cut(s)	296
BfoI	RGCGCY	1 cut(s)	759
BfuAI	ACCTGC	1 cut(s)	303
BisI	GCNGC	8 cut(s)	65, 113, 225, 318, 444, 453, 456, 624
BlpI	GCTNAGC	1 cut(s)	759
BlsI	GCNGC	8 cut(s)	66, 114, 226, 319, 445, 454, 457, 625
Bme1390I	CCNGG	5 cut(s)	387, 408, 491, 653, 750
Bme18I	GGWCC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	447
BmgT120I	GGNCC	3 cut(s)	88, 598, 599
BmiI	GGNNCC	2 cut(s)	600, 666
BmrFI	CCNGG	5 cut(s)	387, 408, 491, 653, 750
BmsI	GCATC	1 cut(s)	499
BpmI	CTGGAG	1 cut(s)	639
Bpu10I	CCTNAGC	2 cut(s)	40, 74
Bpu1102I	GCTNAGC	1 cut(s)	759
BpuMI	CCSGG	1 cut(s)	653
BsaJI	CCNNGG	4 cut(s)	144, 367, 407, 749
BsaWI	WCCGGW	2 cut(s)	203, 245
Bsc4I	CCNNNNNNNGG	5 cut(s)	176, 249, 338, 413, 574
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	40, 622
Bse3DI	GCAATG	2 cut(s)	24, 519
BseBI	CCWGG	4 cut(s)	387, 408, 491, 750
BseDI	CCNNGG	4 cut(s)	144, 367, 407, 749
BseGI	GGATG	3 cut(s)	91, 258, 417
BseLI	CCNNNNNNNGG	5 cut(s)	176, 249, 338, 413, 574
BseMI	GCAATG	2 cut(s)	24, 519
BseMII	CTCAG	4 cut(s)	54, 65, 172, 773
BseNI	ACTGG	2 cut(s)	40, 622
BseSI	GKGCMC	1 cut(s)	602
BseXI	GCAGC	8 cut(s)	51, 124, 211, 304, 455, 464, 467, 610
BseYI	CCCAGC	2 cut(s)	195, 217
BsgI	GTGCAG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	600
BshTI	ACCGGT	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	3 cut(s)	204, 246, 653
BslI	CCNNNNNNNGG	5 cut(s)	176, 249, 338, 413, 574
BsmAI	GTCTC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	1 cut(s)	600
BsoBI	CYCGRG	1 cut(s)	447
Bsp120I	GGGCCC	1 cut(s)	598
Bsp1286I	GDGCHC	1 cut(s)	602
Bsp1407I	TGTACA	1 cut(s)	269
Bsp1720I	GCTNAGC	1 cut(s)	759
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	600
BspCNI	CTCAG	4 cut(s)	53, 66, 171, 772
BspHI	TCATGA	1 cut(s)	726
BspLI	GGNNCC	2 cut(s)	600, 666
BspMAI	CTGCAG	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	303
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	2 cut(s)	24, 519
BsrFI	RCCGGY	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	40, 622
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	4 cut(s)	144, 367, 407, 749
BssSI	CACGAG	1 cut(s)	434
BssT1I	CCWWGG	2 cut(s)	144, 367
Bst2BI	CACGAG	1 cut(s)	434
Bst2UI	CCWGG	4 cut(s)	387, 408, 491, 750
Bst4CI	ACNGT	2 cut(s)	125, 394
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	658
BstDEI	CTNAG	4 cut(s)	40, 74, 158, 759
BstEII	GGTNACC	1 cut(s)	577
BstENI	CCTNNNNNAGG	1 cut(s)	247
BstF5I	GGATG	3 cut(s)	91, 258, 417
BstH2I	RGCGCY	1 cut(s)	759
BstHHI	GCGC	1 cut(s)	758
BstMAI	GTCTC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 449, 452, 461
BstNI	CCWGG	4 cut(s)	387, 408, 491, 750
BstPI	GGTNACC	1 cut(s)	577
BstSCI	CCNGG	5 cut(s)	385, 406, 489, 651, 748
BstSFI	CTRYAG	1 cut(s)	296
BstSLI	GKGCMC	1 cut(s)	602
BstV1I	GCAGC	8 cut(s)	51, 124, 211, 304, 455, 464, 467, 610
BsuRI	GGCC	1 cut(s)	600
BtsCI	GGATG	3 cut(s)	91, 258, 417
BtsIMutI	CAGTG	2 cut(s)	130, 149
BveI	ACCTGC	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	658
CciI	TCATGA	1 cut(s)	726
CfoI	GCGC	1 cut(s)	758
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	3 cut(s)	88, 598, 599
Csp6I	GTAC	3 cut(s)	104, 240, 270
CspAI	ACCGGT	1 cut(s)	203
CviAII	CATG	2 cut(s)	472, 727
CviJI	RGCY	9 cut(s)	39, 199, 217, 398, 446, 506, 600, 623, 763
CviKI_1	RGCY	9 cut(s)	39, 199, 217, 398, 446, 506, 600, 623, 763
CviQI	GTAC	3 cut(s)	104, 240, 270
DdeI	CTNAG	4 cut(s)	40, 74, 158, 759
Eco130I	CCWWGG	2 cut(s)	144, 367
Eco24I	GRGCYC	1 cut(s)	602
Eco32I	GATATC	1 cut(s)	773
Eco47I	GGWCC	1 cut(s)	88
Eco88I	CYCGRG	1 cut(s)	447
Eco91I	GGTNACC	1 cut(s)	577
EcoNI	CCTNNNNNAGG	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	599
EcoO65I	GGTNACC	1 cut(s)	577
EcoRII	CCWGG	4 cut(s)	385, 406, 489, 748
EcoRV	GATATC	1 cut(s)	773
EcoT14I	CCWWGG	2 cut(s)	144, 367
EcoT38I	GRGCYC	1 cut(s)	602
ErhI	CCWWGG	2 cut(s)	144, 367
FaeI	CATG	2 cut(s)	475, 730
FatI	CATG	2 cut(s)	471, 726
FauNDI	CATATG	1 cut(s)	58
Fnu4HI	GCNGC	8 cut(s)	65, 113, 225, 318, 444, 453, 456, 624
FokI	GGATG	3 cut(s)	78, 265, 424
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	8 cut(s)	65, 113, 225, 318, 444, 453, 456, 624
GlaI	GCGC	1 cut(s)	757
GluI	GCNGC	8 cut(s)	65, 113, 225, 318, 444, 453, 456, 624
GsaI	CCCAGC	2 cut(s)	199, 221
GsuI	CTGGAG	1 cut(s)	639
HaeII	RGCGCY	1 cut(s)	759
HaeIII	GGCC	1 cut(s)	600
HapII	CCGG	3 cut(s)	204, 246, 653
HhaI	GCGC	1 cut(s)	758
Hin1II	CATG	2 cut(s)	475, 730
Hin6I	GCGC	1 cut(s)	756
HinP1I	GCGC	1 cut(s)	756
HinfI	GANTC	4 cut(s)	118, 154, 730, 797
HpaII	CCGG	3 cut(s)	204, 246, 653
HphI	GGTGA	1 cut(s)	218
Hpy188I	TCNGA	1 cut(s)	610
Hpy188III	TCNNGA	3 cut(s)	11, 685, 727
HpyAV	CCTTC	1 cut(s)	568
HpyCH4III	ACNGT	2 cut(s)	125, 394
HpyCH4IV	ACGT	1 cut(s)	793
HpyCH4V	TGCA	9 cut(s)	18, 29, 56, 112, 227, 298, 464, 512, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 449, 452, 461
HpyF3I	CTNAG	4 cut(s)	40, 74, 158, 759
HpySE526I	ACGT	1 cut(s)	793
Hsp92II	CATG	2 cut(s)	475, 730
HspAI	GCGC	1 cut(s)	756
LmnI	GCTCC	1 cut(s)	620
Lsp1109I	GCAGC	8 cut(s)	51, 124, 211, 304, 455, 464, 467, 610
LweI	GCATC	1 cut(s)	499
MaeII	ACGT	1 cut(s)	793
MaeIII	GTNAC	2 cut(s)	376, 577
MbiI	CCGCTC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	731
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	602
MluCI	AATT	4 cut(s)	459, 475, 498, 776
MmeI	TCCRAC	2 cut(s)	409, 696
MnlI	CCTC	7 cut(s)	69, 173, 253, 272, 276, 430, 683
MseI	TTAA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	3 cut(s)	204, 246, 653
MspR9I	CCNGG	5 cut(s)	387, 408, 491, 653, 750
MunI	CAATTG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	4 cut(s)	387, 408, 491, 750
MwoI	GCNNNNNNNGC	4 cut(s)	70, 449, 452, 461
NciI	CCSGG	1 cut(s)	653
NdeI	CATATG	1 cut(s)	58
NlaIII	CATG	2 cut(s)	475, 730
NlaIV	GGNNCC	2 cut(s)	600, 666
PagI	TCATGA	1 cut(s)	726
PctI	GAATGC	1 cut(s)	568
PfeI	GAWTC	4 cut(s)	118, 154, 730, 797
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	8 cut(s)	66, 114, 226, 319, 445, 454, 457, 625
Psp6I	CCWGG	4 cut(s)	385, 406, 489, 748
PspEI	GGTNACC	1 cut(s)	577
PspFI	CCCAGC	2 cut(s)	195, 217
PspGI	CCWGG	4 cut(s)	385, 406, 489, 748
PspN4I	GGNNCC	2 cut(s)	600, 666
PspOMI	GGGCCC	1 cut(s)	598
PspPI	GGNCC	3 cut(s)	88, 598, 599
PstI	CTGCAG	1 cut(s)	300
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	3 cut(s)	105, 241, 271
RsaNI	GTAC	3 cut(s)	104, 240, 270
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	8 cut(s)	65, 113, 225, 318, 444, 453, 456, 624
Sau96I	GGNCC	3 cut(s)	88, 598, 599
ScrFI	CCNGG	5 cut(s)	387, 408, 491, 653, 750
SduI	GDGCHC	1 cut(s)	602
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	296
SinI	GGWCC	1 cut(s)	88
Sse9I	AATT	4 cut(s)	459, 475, 498, 776
SsiI	CCGC	1 cut(s)	6
SspI	AATATT	1 cut(s)	647
StyD4I	CCNGG	5 cut(s)	385, 406, 489, 651, 748
StyI	CCWWGG	2 cut(s)	144, 367
TaaI	ACNGT	2 cut(s)	125, 394
TaiI	ACGT	1 cut(s)	796
TasI	AATT	4 cut(s)	459, 475, 498, 776
TatI	WGTACW	1 cut(s)	269
TfiI	GAWTC	4 cut(s)	118, 154, 730, 797
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	2 cut(s)	130, 156
TseI	GCWGC	8 cut(s)	64, 112, 224, 317, 443, 452, 455, 623
TspDTI	ATGAA	2 cut(s)	488, 743
TspRI	CASTG	2 cut(s)	130, 156
VpaK11BI	GGWCC	1 cut(s)	88
XagI	CCTNNNNNAGG	1 cut(s)	247
XapI	RAATTY	2 cut(s)	475, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.