pycom17g09090

Translation initiation factor SUI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
6803679 .. 6805732
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
ATGCAGGAACTCAATTTGATAAGCTACATACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTAAGTTTGTTAACTTTTCTGAAGAGAAATAGAATTAGTAATTTTGGTAAAACCCCGAGTTTTGTGCGGTTTGCACGACTCTTTCTTATCCTATATAAACCCCTCCACCCGCTCTCCCTTTTCCTCATCCCTTTTTCTGTCTCTTCCCTCTGTCCCTTGTTTGGATTCACCCTCTCTGCAAATCAGATTTTATATTGCTGTTCAAGAAAAATCCCTTTTGCTGGTTACTTGATCTTCTACCTCCAACAGTCAAGTTTCATGTCTGAATTCGACACCCAGGTCCCATCTGCTTTTGATCCCTTTGCTGATGCAAATGCTGAGAACTCAGGTGCAGGGACAAAAGAGTATGTGCATGTCCGTGTACAGCAGCGCAACGGGAGGAAAAGCCTGACTACTGTACAAGGATTGAAGAAGGAATACAGCTACAATAAGATACTAAAGGACCTCAAGAAAGAGTTCTGTTGTAATGGTACTGTCGTTGAGGATCCTGAGTTAGGCCAGGTCATACAACTTCAGGGGGACCAGAGAAAGAATGTTTCCTCCTTCCTTGTGCAGGCCGGCATTGTTAAGAAGGAGCACATCAAAATTCATGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

234

Amino Acids

26.64

Weight (kDa)

9.45

Isoelectric Point (pI)

26.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 148 - 222 6.5e-26 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
AccBSI CCGCTC 1 cut(s) 214
AciI CCGC 2 cut(s) 169, 212
AclWI GGATC 3 cut(s) 392, 581, 594
AcsI RAATTY 2 cut(s) 368, 687
AcuI CTGAAG 2 cut(s) 143, 599
AfaI GTAC 3 cut(s) 465, 501, 574
AfiI CCNNNNNNNGG 4 cut(s) 263, 323, 596, 655
AgsI TTSAA 2 cut(s) 306, 511
AjnI CCWGG 2 cut(s) 378, 600
AluBI AGCT 2 cut(s) 24, 525
AluI AGCT 2 cut(s) 24, 525
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 3 cut(s) 392, 581, 594
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 2 cut(s) 598, 657
ApeKI GCWGC 1 cut(s) 469
ApoI RAATTY 2 cut(s) 368, 687
Asp700I GAANNNNTTC 1 cut(s) 557
AspLEI GCGC 1 cut(s) 474
AspS9I GGNCC 3 cut(s) 382, 544, 622
AsuHPI GGTGA 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 157
AvaII GGWCC 3 cut(s) 382, 544, 622
BaeI ACNNNNGTAYC 2 cut(s) 564, 597
BamHI GGATCC 1 cut(s) 586
BarI GAAGNNNNNNTAC 2 cut(s) 503, 535
Bbv12I GWGCWC 1 cut(s) 681
BbvI GCAGC 1 cut(s) 481
BccI CCATC 1 cut(s) 394
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 2 cut(s) 380, 602
BcoDI GTCTC 1 cut(s) 247
BisI GCNGC 1 cut(s) 470
BlsI GCNGC 1 cut(s) 471
Bme1390I CCNGG 2 cut(s) 380, 602
Bme18I GGWCC 3 cut(s) 382, 544, 622
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 3 cut(s) 382, 544, 622
BmiI GGNNCC 3 cut(s) 384, 588, 623
BmrFI CCNGG 2 cut(s) 380, 602
BmsI GCATC 1 cut(s) 400
BpuEI CTTGAG 1 cut(s) 533
BsaJI CCNNGG 1 cut(s) 378
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 4 cut(s) 263, 323, 596, 655
Bse118I RCCGGY 1 cut(s) 659
BseBI CCWGG 2 cut(s) 380, 602
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 4 cut(s) 263, 323, 596, 655
BseMII CTCAG 3 cut(s) 411, 441, 582
BseXI GCAGC 1 cut(s) 481
BsgI GTGCAG 2 cut(s) 453, 674
BshFI GGCC 2 cut(s) 600, 659
BsiHKAI GWGCWC 1 cut(s) 681
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 1 cut(s) 660
BslFI GGGAC 4 cut(s) 240, 368, 451, 635
BslI CCNNNNNNNGG 4 cut(s) 263, 323, 596, 655
BsmAI GTCTC 1 cut(s) 247
BsmFI GGGAC 4 cut(s) 240, 368, 451, 635
BsnI GGCC 2 cut(s) 600, 659
BsoBI CYCGRG 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 681
Bsp1407I TGTACA 2 cut(s) 463, 499
Bsp143I GATC 3 cut(s) 333, 397, 586
BspACI CCGC 2 cut(s) 169, 212
BspANI GGCC 2 cut(s) 600, 659
BspCNI CTCAG 3 cut(s) 412, 440, 583
BspLI GGNNCC 3 cut(s) 384, 588, 623
BspPI GGATC 3 cut(s) 392, 581, 594
BsrBI CCGCTC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 659
BsrGI TGTACA 2 cut(s) 463, 499
BssAI RCCGGY 1 cut(s) 659
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 3 cut(s) 333, 397, 586
Bst2UI CCWGG 2 cut(s) 380, 602
Bst4CI ACNGT 3 cut(s) 351, 499, 577
Bst6I CTCTTC 2 cut(s) 119, 250
BstAUI TGTACA 2 cut(s) 463, 499
BstC8I GCNNGC 2 cut(s) 657, 661
BstDEI CTNAG 4 cut(s) 104, 420, 427, 591
BstENI CCTNNNNNAGG 2 cut(s) 594, 653
BstF5I GGATG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 474
BstKTI GATC 3 cut(s) 336, 400, 589
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 3 cut(s) 333, 397, 586
BstNI CCWGG 2 cut(s) 380, 602
BstNSI RCATGY 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 378, 600
BstV1I GCAGC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BsuRI GGCC 2 cut(s) 600, 659
BtsCI GGATG 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 657, 661
CfoI GCGC 1 cut(s) 474
Cfr10I RCCGGY 1 cut(s) 659
Cfr13I GGNCC 3 cut(s) 382, 544, 622
Csp6I GTAC 3 cut(s) 464, 500, 573
CviAII CATG 3 cut(s) 361, 455, 692
CviJI RGCY 5 cut(s) 24, 489, 525, 600, 659
CviKI_1 RGCY 5 cut(s) 24, 489, 525, 600, 659
CviQI GTAC 3 cut(s) 464, 500, 573
DdeI CTNAG 4 cut(s) 104, 420, 427, 591
DpnI GATC 3 cut(s) 335, 399, 588
DpnII GATC 3 cut(s) 333, 397, 586
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 119, 250
EarI CTCTTC 2 cut(s) 119, 250
Eco47I GGWCC 3 cut(s) 382, 544, 622
Eco57I CTGAAG 2 cut(s) 143, 599
Eco88I CYCGRG 1 cut(s) 157
EcoNI CCTNNNNNAGG 2 cut(s) 594, 653
EcoO109I RGGNCCY 2 cut(s) 382, 544
EcoRI GAATTC 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 378, 600
FaeI CATG 3 cut(s) 364, 458, 695
FaiI YATR 9 cut(s) 29, 196, 198, 295, 362, 450, 456, 608, 693
FaqI GGGAC 4 cut(s) 240, 368, 451, 635
FatI CATG 3 cut(s) 360, 454, 691
FauI CCCGC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 470
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 470
GlaI GCGC 1 cut(s) 473
GluI GCNGC 1 cut(s) 470
HaeIII GGCC 2 cut(s) 600, 659
HapII CCGG 1 cut(s) 660
HhaI GCGC 1 cut(s) 474
Hin1II CATG 3 cut(s) 364, 458, 695
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HinfI GANTC 2 cut(s) 180, 267
HpaI GTTAAC 1 cut(s) 114
HpaII CCGG 1 cut(s) 660
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 2 cut(s) 114, 464
Hpy188I TCNGA 3 cut(s) 123, 288, 367
Hpy188III TCNNGA 3 cut(s) 306, 550, 590
Hpy8I GTNNAC 2 cut(s) 114, 464
HpyAV CCTTC 3 cut(s) 508, 655, 667
HpyCH4III ACNGT 3 cut(s) 351, 499, 577
HpyCH4V TGCA 7 cut(s) 4, 176, 281, 413, 434, 454, 655
HpyF3I CTNAG 4 cut(s) 104, 420, 427, 591
Hsp92II CATG 3 cut(s) 364, 458, 695
HspAI GCGC 1 cut(s) 472
KroI GCCGGC 1 cut(s) 659
KroNI GCCGGC 1 cut(s) 661
KspAI GTTAAC 1 cut(s) 114
Kzo9I GATC 3 cut(s) 333, 397, 586
LmnI GCTCC 1 cut(s) 676
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 1 cut(s) 400
MaeIII GTNAC 1 cut(s) 326
MalI GATC 3 cut(s) 335, 399, 588
MbiI CCGCTC 1 cut(s) 214
MboI GATC 3 cut(s) 333, 397, 586
MboII GAAGA 4 cut(s) 136, 237, 328, 523
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 1 cut(s) 681
MluCI AATT 5 cut(s) 13, 135, 142, 368, 687
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 9 cut(s) 215, 236, 260, 284, 353, 474, 557, 577, 652
MroNI GCCGGC 1 cut(s) 659
MroXI GAANNNNTTC 1 cut(s) 557
MseI TTAA 2 cut(s) 113, 669
MslI CAYNNNNRTG 1 cut(s) 459
MspI CCGG 1 cut(s) 660
MspR9I CCNGG 2 cut(s) 380, 602
MvaI CCWGG 2 cut(s) 380, 602
NaeI GCCGGC 1 cut(s) 661
NdeII GATC 3 cut(s) 333, 397, 586
NgoMIV GCCGGC 1 cut(s) 659
NlaIII CATG 3 cut(s) 364, 458, 695
NlaIV GGNNCC 3 cut(s) 384, 588, 623
NspI RCATGY 1 cut(s) 458
PdiI GCCGGC 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 557
PfeI GAWTC 1 cut(s) 267
PkrI GCNGC 1 cut(s) 471
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PpuMI RGGWCCY 2 cut(s) 382, 544
Psp5II RGGWCCY 2 cut(s) 382, 544
Psp6I CCWGG 2 cut(s) 378, 600
PspGI CCWGG 2 cut(s) 378, 600
PspN4I GGNNCC 3 cut(s) 384, 588, 623
PspPI GGNCC 3 cut(s) 382, 544, 622
PspPPI RGGWCCY 2 cut(s) 382, 544
PsuI RGATCY 1 cut(s) 586
RsaI GTAC 3 cut(s) 465, 501, 574
RsaNI GTAC 3 cut(s) 464, 500, 573
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 2 cut(s) 113, 669
SatI GCNGC 1 cut(s) 470
Sau3AI GATC 3 cut(s) 333, 397, 586
Sau96I GGNCC 3 cut(s) 382, 544, 622
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 2 cut(s) 380, 602
SduI GDGCHC 1 cut(s) 681
SetI ASST 7 cut(s) 26, 345, 384, 433, 527, 549, 606
SfaNI GCATC 1 cut(s) 400
SinI GGWCC 3 cut(s) 382, 544, 622
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 5 cut(s) 13, 135, 142, 368, 687
SsiI CCGC 2 cut(s) 169, 212
StyD4I CCNGG 2 cut(s) 378, 600
TaaI ACNGT 3 cut(s) 351, 499, 577
TaqI TCGA 1 cut(s) 372
TasI AATT 5 cut(s) 13, 135, 142, 368, 687
TatI WGTACW 2 cut(s) 463, 499
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 2 cut(s) 113, 669
Tru9I TTAA 2 cut(s) 113, 669
TseI GCWGC 1 cut(s) 469
TspDTI ATGAA 2 cut(s) 349, 680
TspGWI ACGGA 1 cut(s) 449
VpaK11BI GGWCC 3 cut(s) 382, 544, 622
XagI CCTNNNNNAGG 2 cut(s) 594, 653
XapI RAATTY 2 cut(s) 368, 687
XceI RCATGY 1 cut(s) 458
XmnI GAANNNNTTC 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.