pycom17g09810

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
7463473 .. 7464422
950 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 846 bp
ATGCTCTGCTTCTCCAAGAATCAGAGTATGGAACGCCACGTCATCGCCGTCGTGCTTCTCCTTTCCGTCTTTTCATCTCTAGCAGATGCGGGCTCGGTGGGAGTGAACTATGGCAGAATCGCAGACAACCTGCCGTCGGCGTACAAGGTGGTGCAGCTTCTGAAATCCCAAGGCTTGGAGCGGGTGAAGGTCTTCGACTCCGACCCGGCCGTGCTCCGGGCCCTGTCAGGATCCGACATTAAAGTCACCGTCGACCTCCCCAACGAGCTCCTCTCAGCCGCCGCCAAGTCGCAGTCGTACGCCACCAACTGGGTCCAGCGAAATGTCGTCGCTTACCACCCCAACACCCACATCGAAGCCATCGGCGTCGGTAACGAGGTCTTCGTCGACACCCACGACACCACCAAGTTCCTCATCTCCGCCATGAAAAACATCCACGCCGCCCTCGTCCACTTCAAGCTTGAGTCGTCCATCAAAGTCTCCTCGCCCATTGCCCTCAGCGCGCTTCAAAACTCCTACCCATCCTCCGCCGGGTCATTCCGACCTGAACTCGTGGAACCCGTTTTCAAGCCCATGCTTGAGTTTCTCCGTCAAACCGGGTCCTACCTCATGGTCAACTGCTACCCCTACTTCGCTTACGAGTCAAACTCCGACGTCATTCCCTTGGACTACGCCCTATTCCGCCAAAACCCCGGAGTCGTCGATGCCGGCAACGGTCTCCGTTACTTCAACCTCTTTGACGCTCAGATCGATCGCCGTTTTCGCCGCCATGTCGGCGTTGAAGTACGACGACATCAACATGGTCGTGTCGGAAACGGGCTGGCCGTCGAAAGGCGACTCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17 X8

Protein Analysis

282

Amino Acids

31.13

Weight (kDa)

9.0

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 33 - 251 3.2e-54 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AatII GACGTC 1 cut(s) 657
Acc36I ACCTGC 1 cut(s) 138
AccB7I CCANNNNNTGG 2 cut(s) 175, 309
AccBSI CCGCTC 1 cut(s) 181
AccI GTMKAC 2 cut(s) 252, 387
AccII CGCG 1 cut(s) 503
AciI CCGC 9 cut(s) 89, 181, 279, 282, 420, 441, 528, 682, 766
AclWI GGATC 2 cut(s) 225, 238
AcoI YGGCCR 2 cut(s) 207, 822
AcyI GRCGYC 2 cut(s) 366, 654
AfaI GTAC 3 cut(s) 143, 299, 786
AfiI CCNNNNNNNGG 6 cut(s) 136, 175, 216, 309, 531, 831
AgsI TTSAA 5 cut(s) 457, 509, 568, 730, 782
AjiI CACGTC 1 cut(s) 40
AluBI AGCT 3 cut(s) 157, 268, 460
AluI AGCT 3 cut(s) 157, 268, 460
Alw21I GWGCWC 2 cut(s) 216, 270
Alw26I GTCTC 2 cut(s) 484, 722
AlwI GGATC 2 cut(s) 225, 238
AlwNI CAGNNNCTG 1 cut(s) 160
AoxI GGCC 3 cut(s) 207, 219, 822
ApaI GGGCCC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 154
Asp700I GAANNNNTTC 1 cut(s) 191
AspLEI GCGC 2 cut(s) 503, 505
AspS9I GGNCC 4 cut(s) 219, 220, 313, 600
AsuC2I CCSGG 5 cut(s) 206, 218, 532, 598, 693
AsuHPI GGTGA 2 cut(s) 196, 238
AvaII GGWCC 2 cut(s) 313, 600
BaeGI GKGCMC 1 cut(s) 223
BamHI GGATCC 1 cut(s) 230
BanII GRGCYC 3 cut(s) 95, 223, 270
BauI CACGAG 1 cut(s) 551
BbsI GAAGAC 2 cut(s) 184, 373
Bbv12I GWGCWC 2 cut(s) 216, 270
BbvCI CCTCAGC 1 cut(s) 497
BbvI GCAGC 1 cut(s) 166
BccI CCATC 3 cut(s) 368, 479, 529
BceAI ACGGC 5 cut(s) 32, 118, 194, 741, 809
BcnI CCSGG 5 cut(s) 206, 218, 532, 598, 693
BcoDI GTCTC 2 cut(s) 484, 722
BfaI CTAG 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 138
BglI GCCNNNNNGGC 1 cut(s) 774
BisI GCNGC 5 cut(s) 155, 279, 282, 441, 766
BlsI GCNGC 5 cut(s) 156, 280, 283, 442, 767
Bme1390I CCNGG 5 cut(s) 206, 218, 532, 598, 693
Bme18I GGWCC 2 cut(s) 313, 600
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 4 cut(s) 219, 220, 313, 600
BmiI GGNNCC 5 cut(s) 221, 232, 314, 558, 601
BmrFI CCNGG 5 cut(s) 206, 218, 532, 598, 693
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 2 cut(s) 76, 694
BmuI ACTGGG 1 cut(s) 319
BpiI GAAGAC 2 cut(s) 184, 373
BplI GAGNNNNNCTC 4 cut(s) 257, 289, 632, 664
Bpu10I CCTNAGC 1 cut(s) 497
BpuEI CTTGAG 2 cut(s) 482, 599
BpuMI CCSGG 5 cut(s) 206, 218, 532, 598, 693
Bsa29I ATCGAT 1 cut(s) 750
BsaHI GRCGYC 2 cut(s) 366, 654
BsaI GGTCTC 1 cut(s) 722
BsaJI CCNNGG 3 cut(s) 169, 663, 691
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 6 cut(s) 136, 175, 216, 309, 531, 831
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 489
BseCI ATCGAT 1 cut(s) 750
BseDI CCNNGG 3 cut(s) 169, 663, 691
BseGI GGATG 2 cut(s) 432, 521
BseLI CCNNNNNNNGG 6 cut(s) 136, 175, 216, 309, 531, 831
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 3 cut(s) 288, 511, 758
BseNI ACTGG 1 cut(s) 314
BsePI GCGCGC 1 cut(s) 501
BseRI GAGGAG 2 cut(s) 260, 472
BseSI GKGCMC 1 cut(s) 223
BseX3I CGGCCG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 166
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 503
Bsh1285I CGRYCG 2 cut(s) 210, 754
BshFI GGCC 3 cut(s) 209, 221, 824
BshVI ATCGAT 1 cut(s) 750
BsiEI CGRYCG 2 cut(s) 210, 754
BsiHKAI GWGCWC 2 cut(s) 216, 270
BsiSI CCGG 6 cut(s) 206, 217, 531, 597, 693, 708
BsiWI CGTACG 1 cut(s) 297
BslI CCNNNNNNNGG 6 cut(s) 136, 175, 216, 309, 531, 831
BsmAI GTCTC 2 cut(s) 484, 722
BsnI GGCC 3 cut(s) 209, 221, 824
Bso31I GGTCTC 1 cut(s) 722
Bsp120I GGGCCC 1 cut(s) 219
Bsp1286I GDGCHC 4 cut(s) 95, 216, 223, 270
Bsp143I GATC 3 cut(s) 230, 747, 751
BspACI CCGC 9 cut(s) 89, 181, 279, 282, 420, 441, 528, 682, 766
BspANI GGCC 3 cut(s) 209, 221, 824
BspCNI CTCAG 3 cut(s) 287, 510, 757
BspDI ATCGAT 1 cut(s) 750
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 5 cut(s) 221, 232, 314, 558, 601
BspMI ACCTGC 1 cut(s) 138
BspPI GGATC 2 cut(s) 225, 238
BspTNI GGTCTC 1 cut(s) 722
BsrBI CCGCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 489
BsrFI RCCGGY 1 cut(s) 707
BsrI ACTGG 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 3 cut(s) 169, 663, 691
BssHII GCGCGC 1 cut(s) 501
BssMI GATC 3 cut(s) 230, 747, 751
BssNI GRCGYC 2 cut(s) 366, 654
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 2 cut(s) 169, 663
Bst2BI CACGAG 1 cut(s) 551
Bst4CI ACNGT 2 cut(s) 250, 716
BstACI GRCGYC 2 cut(s) 366, 654
BstC8I GCNNGC 4 cut(s) 91, 503, 709, 822
BstDEI CTNAG 3 cut(s) 274, 497, 744
BstF5I GGATG 2 cut(s) 432, 521
BstFNI CGCG 1 cut(s) 503
BstHHI GCGC 2 cut(s) 503, 505
BstKTI GATC 3 cut(s) 233, 750, 754
BstMAI GTCTC 2 cut(s) 484, 722
BstMBI GATC 3 cut(s) 230, 747, 751
BstMCI CGRYCG 2 cut(s) 210, 754
BstMWI GCNNNNNNNGC 3 cut(s) 500, 762, 774
BstSCI CCNGG 5 cut(s) 204, 216, 530, 596, 691
BstSLI GKGCMC 1 cut(s) 223
BstUI CGCG 1 cut(s) 503
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 2 cut(s) 184, 373
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BstZI CGGCCG 1 cut(s) 207
Bsu15I ATCGAT 1 cut(s) 750
BsuRI GGCC 3 cut(s) 209, 221, 824
BsuTUI ATCGAT 1 cut(s) 750
BtgZI GCGATG 1 cut(s) 28
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 2 cut(s) 432, 521
BveI ACCTGC 1 cut(s) 138
Cac8I GCNNGC 4 cut(s) 91, 503, 709, 822
CaiI CAGNNNCTG 1 cut(s) 160
CfoI GCGC 2 cut(s) 503, 505
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 4 cut(s) 219, 220, 313, 600
ClaI ATCGAT 1 cut(s) 750
CseI GACGC 2 cut(s) 355, 749
Csp6I GTAC 3 cut(s) 142, 298, 785
CviAII CATG 5 cut(s) 424, 574, 610, 770, 800
CviQI GTAC 3 cut(s) 142, 298, 785
DdeI CTNAG 3 cut(s) 274, 497, 744
DpnI GATC 3 cut(s) 232, 749, 753
DpnII GATC 3 cut(s) 230, 747, 751
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EaeI YGGCCR 2 cut(s) 207, 822
EagI CGGCCG 1 cut(s) 207
EciI GGCGGA 3 cut(s) 409, 517, 671
Ecl136II GAGCTC 1 cut(s) 268
EclXI CGGCCG 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 169, 663
Eco24I GRGCYC 3 cut(s) 95, 223, 270
Eco31I GGTCTC 1 cut(s) 722
Eco47I GGWCC 2 cut(s) 313, 600
Eco52I CGGCCG 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 268
EcoO109I RGGNCCY 2 cut(s) 220, 600
EcoT14I CCWWGG 2 cut(s) 169, 663
EcoT38I GRGCYC 3 cut(s) 95, 223, 270
ErhI CCWWGG 2 cut(s) 169, 663
FaeI CATG 5 cut(s) 427, 577, 613, 773, 803
FaiI YATR 7 cut(s) 29, 111, 425, 575, 611, 771, 801
FatI CATG 5 cut(s) 423, 573, 609, 769, 799
FauI CCCGC 2 cut(s) 82, 174
FblI GTMKAC 2 cut(s) 252, 387
Fnu4HI GCNGC 5 cut(s) 155, 279, 282, 441, 766
FokI GGATG 2 cut(s) 419, 508
FriOI GRGCYC 3 cut(s) 95, 223, 270
Fsp4HI GCNGC 5 cut(s) 155, 279, 282, 441, 766
FspBI CTAG 1 cut(s) 80
GlaI GCGC 2 cut(s) 502, 504
GluI GCNGC 5 cut(s) 155, 279, 282, 441, 766
HaeIII GGCC 3 cut(s) 209, 221, 824
HapII CCGG 6 cut(s) 206, 217, 531, 597, 693, 708
HgaI GACGC 2 cut(s) 355, 749
HhaI GCGC 2 cut(s) 503, 505
Hin1I GRCGYC 2 cut(s) 366, 654
Hin1II CATG 5 cut(s) 427, 577, 613, 773, 803
Hin6I GCGC 2 cut(s) 501, 503
HinP1I GCGC 2 cut(s) 501, 503
HincII GTYRAC 3 cut(s) 253, 388, 616
HindII GTYRAC 3 cut(s) 253, 388, 616
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 7 cut(s) 19, 117, 197, 464, 641, 696, 837
HpaII CCGG 6 cut(s) 206, 217, 531, 597, 693, 708
HphI GGTGA 2 cut(s) 196, 238
Hpy166II GTNNAC 5 cut(s) 106, 253, 388, 451, 616
Hpy188I TCNGA 8 cut(s) 24, 162, 202, 235, 542, 652, 747, 812
Hpy188III TCNNGA 1 cut(s) 228
Hpy8I GTNNAC 5 cut(s) 106, 253, 388, 451, 616
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 250, 716
HpyCH4IV ACGT 2 cut(s) 39, 654
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 3 cut(s) 500, 762, 774
HpyF3I CTNAG 3 cut(s) 274, 497, 744
HpySE526I ACGT 2 cut(s) 39, 654
Hsp92I GRCGYC 2 cut(s) 366, 654
Hsp92II CATG 5 cut(s) 427, 577, 613, 773, 803
HspAI GCGC 2 cut(s) 501, 503
KroI GCCGGC 1 cut(s) 707
KroNI GCCGGC 1 cut(s) 709
Kzo9I GATC 3 cut(s) 230, 747, 751
LmnI GCTCC 3 cut(s) 178, 219, 273
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 2 cut(s) 76, 694
MaeI CTAG 1 cut(s) 80
MaeII ACGT 2 cut(s) 39, 654
MaeIII GTNAC 3 cut(s) 244, 371, 722
MalI GATC 3 cut(s) 232, 749, 753
MbiI CCGCTC 1 cut(s) 181
MboI GATC 3 cut(s) 230, 747, 751
MboII GAAGA 2 cut(s) 184, 373
MflI RGATCY 1 cut(s) 230
MhlI GDGCHC 4 cut(s) 95, 216, 223, 270
MlyI GAGTC 5 cut(s) 191, 473, 650, 705, 831
MmeI TCCRAC 5 cut(s) 225, 258, 565, 675, 790
MroNI GCCGGC 1 cut(s) 707
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 2 cut(s) 798, 804
MspI CCGG 6 cut(s) 206, 217, 531, 597, 693, 708
MspR9I CCNGG 5 cut(s) 206, 218, 532, 598, 693
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 3 cut(s) 500, 762, 774
NaeI GCCGGC 1 cut(s) 709
NciI CCSGG 5 cut(s) 206, 218, 532, 598, 693
NdeII GATC 3 cut(s) 230, 747, 751
NgoMIV GCCGGC 1 cut(s) 707
NlaIII CATG 5 cut(s) 427, 577, 613, 773, 803
NlaIV GGNNCC 5 cut(s) 221, 232, 314, 558, 601
NmuCI GTSAC 1 cut(s) 244
PauI GCGCGC 1 cut(s) 501
PcsI WCGNNNNNNNCGW 7 cut(s) 45, 381, 393, 444, 558, 747, 822
PdiI GCCGGC 1 cut(s) 709
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 19, 117
Pfl23II CGTACG 1 cut(s) 297
PflMI CCANNNNNTGG 2 cut(s) 175, 309
PkrI GCNGC 5 cut(s) 156, 280, 283, 442, 767
Ple19I CGATCG 1 cut(s) 754
PleI GAGTC 5 cut(s) 191, 472, 649, 704, 831
PpsI GAGTC 5 cut(s) 191, 472, 649, 704, 831
PpuMI RGGWCCY 1 cut(s) 600
Psp124BI GAGCTC 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 600
PspLI CGTACG 1 cut(s) 297
PspN4I GGNNCC 5 cut(s) 221, 232, 314, 558, 601
PspOMI GGGCCC 1 cut(s) 219
PspPI GGNCC 4 cut(s) 219, 220, 313, 600
PspPPI RGGWCCY 1 cut(s) 600
PstNI CAGNNNCTG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 230
PteI GCGCGC 1 cut(s) 501
PvuI CGATCG 1 cut(s) 754
RsaI GTAC 3 cut(s) 143, 299, 786
RsaNI GTAC 3 cut(s) 142, 298, 785
RseI CAYNNNNRTG 2 cut(s) 798, 804
SacI GAGCTC 1 cut(s) 270
SalI GTCGAC 2 cut(s) 251, 386
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 5 cut(s) 155, 279, 282, 441, 766
Sau3AI GATC 3 cut(s) 230, 747, 751
Sau96I GGNCC 4 cut(s) 219, 220, 313, 600
SchI GAGTC 5 cut(s) 191, 473, 650, 705, 831
ScrFI CCNGG 5 cut(s) 206, 218, 532, 598, 693
SduI GDGCHC 4 cut(s) 95, 216, 223, 270
SfaNI GCATC 2 cut(s) 76, 694
SinI GGWCC 2 cut(s) 313, 600
SmiMI CAYNNNNRTG 2 cut(s) 798, 804
SmlI CTYRAG 2 cut(s) 461, 578
SmoI CTYRAG 2 cut(s) 461, 578
SsiI CCGC 9 cut(s) 89, 181, 279, 282, 420, 441, 528, 682, 766
SspMI CTAG 1 cut(s) 80
SstI GAGCTC 1 cut(s) 270
StyD4I CCNGG 5 cut(s) 204, 216, 530, 596, 691
StyI CCWWGG 2 cut(s) 169, 663
TaaI ACNGT 2 cut(s) 250, 716
TaiI ACGT 2 cut(s) 42, 657
TaqI TCGA 7 cut(s) 195, 252, 354, 387, 702, 750, 828
TauI GCSGC 4 cut(s) 281, 284, 443, 768
TfiI GAWTC 2 cut(s) 19, 117
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 63, 440
TspGWI ACGGA 3 cut(s) 55, 578, 710
Van91I CCANNNNNTGG 2 cut(s) 175, 309
VpaK11BI GGWCC 2 cut(s) 313, 600
XmiI GTMKAC 2 cut(s) 252, 387
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 1 cut(s) 80
ZraI GACGTC 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.