pycom17g09880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
7543227 .. 7544361
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 882 bp
ATGGTGAACAAACCATGGAAGATCATCCCCCGGCCTTTGCTAGAAACCGTGCTCAACAACCACGCCCAGCACCACCGCGTCCCTCAGCCTCTGATCCTCCACGGCCCCAGAGGCGTCGGCAAAACCACCCTCATCCTCGAACGTTTGCTTGGGGAGTGGAACAAAGGCCCTCACCTCACCGGCTACGTCGACTTCGCCGAGTCCATCAAAGACCACCATCCGCAGTTCAATCAGTCGTTTCCATGGGCTTCATGGTACAATTGCCCCCCGCCCACTTTGCTCAATTGCCGAACCAAGCTCGAAAACTGCCTCGAATCCATGGCTCACAAAGGCGTCCAGCTGGGTTCCATCAGCTCCCATCAAATCTTCTCCACTCTCAGCAAATGGCACGGTCTTAACACCGCCCTCCGACGCGTTATTTCCGGCAACGGTGCTTCCAAGAATGCGGTTTCTGAGAAAGTTTCTGGGTCGGTTTTGTGGGATCGGGCGGTGTTCGCGCTAAGTGCTCGATGTAATGTCCAAGAGATTGATGGGATTTTGGGTTTGACTGAGAAGAAGAAGAATGTTCCGTTAGAAGAGGCTTCGTATTATAGGGAGGCCGTTGTGGCATTGAGATTGGCAAAGGAGGTGATTAAGCAGCAGCAAAGCTGGAGGGCTAATGCCATTGCACATTTGAATCGGACCGGTGGGTTTTCGAGGTCTTTGGCAAATTCTATTACTGATTGGCCTTGTTTGTTGTTGGAGTTGTTGTCACAAGCAGCTGAAATTGATCATTTCCAGCCTAAGCTGGTTATTAACAATGTCGAAGTTTTAAAGAATGCGATTCTGTTGGATGAGAATTCATCAGTCTGTGGATCGATTGATAGTACCATGACAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

32.64

Weight (kDa)

9.01

Isoelectric Point (pI)

32.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AccII CGCG 3 cut(s) 78, 414, 497
AciI CCGC 6 cut(s) 76, 221, 269, 402, 446, 488
AclI AACGTT 1 cut(s) 142
AclWI GGATC 3 cut(s) 88, 489, 862
AcsI RAATTY 2 cut(s) 709, 838
AcyI GRCGYC 2 cut(s) 114, 333
AfaI GTAC 2 cut(s) 257, 868
AflIII ACRYGT 1 cut(s) 412
AgeI ACCGGT 1 cut(s) 683
AgsI TTSAA 2 cut(s) 229, 676
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AluBI AGCT 6 cut(s) 298, 340, 354, 648, 761, 787
AluI AGCT 6 cut(s) 298, 340, 354, 648, 761, 787
Alw21I GWGCWC 2 cut(s) 54, 508
AlwI GGATC 3 cut(s) 88, 489, 862
AlwNI CAGNNNCTG 1 cut(s) 91
AoxI GGCC 5 cut(s) 32, 103, 166, 597, 725
ApeKI GCWGC 3 cut(s) 637, 640, 758
ApoI RAATTY 2 cut(s) 709, 838
AsiGI ACCGGT 1 cut(s) 683
AspLEI GCGC 1 cut(s) 499
AspS9I GGNCC 3 cut(s) 104, 167, 681
AsuC2I CCSGG 1 cut(s) 31
AsuHPI GGTGA 4 cut(s) 16, 164, 169, 640
AvaII GGWCC 1 cut(s) 681
Bbv12I GWGCWC 2 cut(s) 54, 508
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 649, 652, 770
BccI CCATC 5 cut(s) 212, 225, 356, 366, 524
BceAI ACGGC 2 cut(s) 118, 584
BclI TGATCA 1 cut(s) 769
BcnI CCSGG 1 cut(s) 31
BfaI CTAG 1 cut(s) 41
BglI GCCNNNNNGGC 2 cut(s) 111, 605
BisI GCNGC 3 cut(s) 638, 641, 759
BlsI GCNGC 3 cut(s) 639, 642, 760
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 681
BmgT120I GGNCC 3 cut(s) 104, 167, 681
BmiI GGNNCC 2 cut(s) 106, 346
BmrFI CCNGG 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 670
Bpu10I CCTNAGC 2 cut(s) 84, 783
BpuMI CCSGG 1 cut(s) 31
Bsa29I ATCGAT 1 cut(s) 857
BsaHI GRCGYC 2 cut(s) 114, 333
BsaJI CCNNGG 5 cut(s) 14, 29, 100, 242, 318
BsaWI WCCGGW 1 cut(s) 683
BsaXI ACNNNNNCTCC 2 cut(s) 734, 764
Bse118I RCCGGY 2 cut(s) 179, 683
Bse3DI GCAATG 1 cut(s) 663
BseCI ATCGAT 1 cut(s) 857
BseDI CCNNGG 5 cut(s) 14, 29, 100, 242, 318
BseGI GGATG 4 cut(s) 24, 132, 217, 838
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 4 cut(s) 98, 391, 444, 540
BseXI GCAGC 3 cut(s) 649, 652, 770
BseYI CCCAGC 2 cut(s) 66, 340
Bsh1236I CGCG 3 cut(s) 78, 414, 497
BshFI GGCC 5 cut(s) 34, 105, 168, 599, 727
BshTI ACCGGT 1 cut(s) 683
BshVI ATCGAT 1 cut(s) 857
BsiHKAI GWGCWC 2 cut(s) 54, 508
BsiSI CCGG 4 cut(s) 31, 180, 423, 684
BslFI GGGAC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 65
BsmI GAATGC 2 cut(s) 448, 823
BsnI GGCC 5 cut(s) 34, 105, 168, 599, 727
Bsp1286I GDGCHC 2 cut(s) 54, 508
Bsp143I GATC 5 cut(s) 21, 93, 481, 769, 854
Bsp19I CCATGG 3 cut(s) 14, 242, 318
BspACI CCGC 6 cut(s) 76, 221, 269, 402, 446, 488
BspANI GGCC 5 cut(s) 34, 105, 168, 599, 727
BspCNI CTCAG 4 cut(s) 97, 390, 445, 541
BspDI ATCGAT 1 cut(s) 857
BspFNI CGCG 3 cut(s) 78, 414, 497
BspLI GGNNCC 2 cut(s) 106, 346
BspPI GGATC 3 cut(s) 88, 489, 862
BsrDI GCAATG 1 cut(s) 663
BsrFI RCCGGY 2 cut(s) 179, 683
BssAI RCCGGY 2 cut(s) 179, 683
BssECI CCNNGG 5 cut(s) 14, 29, 100, 242, 318
BssMI GATC 5 cut(s) 21, 93, 481, 769, 854
BssNI GRCGYC 2 cut(s) 114, 333
BssT1I CCWWGG 3 cut(s) 14, 242, 318
Bst4CI ACNGT 4 cut(s) 49, 392, 431, 877
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 2 cut(s) 114, 333
BstDEI CTNAG 6 cut(s) 84, 377, 453, 500, 549, 783
BstDSI CCRYGG 4 cut(s) 14, 100, 242, 318
BstF5I GGATG 4 cut(s) 24, 132, 217, 838
BstFNI CGCG 3 cut(s) 78, 414, 497
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 5 cut(s) 24, 96, 484, 772, 857
BstMBI GATC 5 cut(s) 21, 93, 481, 769, 854
BstMWI GCNNNNNNNGC 5 cut(s) 111, 277, 494, 503, 605
BstSCI CCNGG 1 cut(s) 29
BstUI CGCG 3 cut(s) 78, 414, 497
BstV1I GCAGC 3 cut(s) 649, 652, 770
Bsu15I ATCGAT 1 cut(s) 857
BsuRI GGCC 5 cut(s) 34, 105, 168, 599, 727
BsuTUI ATCGAT 1 cut(s) 857
BtgI CCRYGG 4 cut(s) 14, 100, 242, 318
BtsCI GGATG 4 cut(s) 24, 132, 217, 838
CaiI CAGNNNCTG 1 cut(s) 91
CfoI GCGC 1 cut(s) 499
Cfr10I RCCGGY 2 cut(s) 179, 683
Cfr13I GGNCC 3 cut(s) 104, 167, 681
ClaI ATCGAT 1 cut(s) 857
CpoI CGGWCCG 1 cut(s) 681
CseI GACGC 4 cut(s) 67, 103, 322, 420
Csp6I GTAC 2 cut(s) 256, 867
CspAI ACCGGT 1 cut(s) 683
CspI CGGWCCG 1 cut(s) 681
CviAII CATG 5 cut(s) 15, 243, 252, 319, 871
CviQI GTAC 2 cut(s) 256, 867
DdeI CTNAG 6 cut(s) 84, 377, 453, 500, 549, 783
DpnI GATC 5 cut(s) 23, 95, 483, 771, 856
DpnII GATC 5 cut(s) 21, 93, 481, 769, 854
DraI TTTAAA 1 cut(s) 813
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Eco130I CCWWGG 3 cut(s) 14, 242, 318
Eco47I GGWCC 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 838
EcoT14I CCWWGG 3 cut(s) 14, 242, 318
ErhI CCWWGG 3 cut(s) 14, 242, 318
FaeI CATG 5 cut(s) 18, 246, 255, 322, 874
FaiI YATR 6 cut(s) 16, 244, 253, 320, 591, 872
FaqI GGGAC 1 cut(s) 65
FatI CATG 5 cut(s) 14, 242, 251, 318, 870
FauI CCCGC 1 cut(s) 276
FbaI TGATCA 1 cut(s) 769
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 638, 641, 759
FokI GGATG 4 cut(s) 11, 119, 204, 845
Fsp4HI GCNGC 3 cut(s) 638, 641, 759
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 498
GluI GCNGC 3 cut(s) 638, 641, 759
GsaI CCCAGC 2 cut(s) 70, 344
GsuI CTGGAG 1 cut(s) 670
HaeIII GGCC 5 cut(s) 34, 105, 168, 599, 727
HapII CCGG 4 cut(s) 31, 180, 423, 684
HgaI GACGC 4 cut(s) 67, 103, 322, 420
HhaI GCGC 1 cut(s) 499
Hin1I GRCGYC 2 cut(s) 114, 333
Hin1II CATG 5 cut(s) 18, 246, 255, 322, 874
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 4 cut(s) 200, 314, 676, 823
HpaII CCGG 4 cut(s) 31, 180, 423, 684
HphI GGTGA 4 cut(s) 16, 164, 169, 640
Hpy166II GTNNAC 2 cut(s) 7, 190
Hpy188I TCNGA 4 cut(s) 93, 410, 454, 681
Hpy8I GTNNAC 2 cut(s) 7, 190
Hpy99I CGWCG 3 cut(s) 119, 191, 414
HpyCH4III ACNGT 4 cut(s) 49, 392, 431, 877
HpyCH4IV ACGT 2 cut(s) 142, 186
HpyCH4V TGCA 1 cut(s) 668
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 277, 494, 503, 605
HpyF3I CTNAG 6 cut(s) 84, 377, 453, 500, 549, 783
HpySE526I ACGT 2 cut(s) 142, 186
Hsp92I GRCGYC 2 cut(s) 114, 333
Hsp92II CATG 5 cut(s) 18, 246, 255, 322, 874
HspAI GCGC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 5 cut(s) 21, 93, 481, 769, 854
LmnI GCTCC 1 cut(s) 359
Lsp1109I GCAGC 3 cut(s) 649, 652, 770
MaeI CTAG 1 cut(s) 41
MaeII ACGT 2 cut(s) 142, 186
MaeIII GTNAC 1 cut(s) 750
MalI GATC 5 cut(s) 23, 95, 483, 771, 856
MboI GATC 5 cut(s) 21, 93, 481, 769, 854
MboII GAAGA 6 cut(s) 31, 358, 565, 568, 571, 587
MfeI CAATTG 2 cut(s) 259, 283
MhlI GDGCHC 2 cut(s) 54, 508
MluCI AATT 5 cut(s) 259, 283, 709, 765, 838
MluI ACGCGT 1 cut(s) 412
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 3 cut(s) 433, 720, 810
MseI TTAA 4 cut(s) 396, 633, 795, 812
MspA1I CMGCKG 2 cut(s) 340, 761
MspI CCGG 4 cut(s) 31, 180, 423, 684
MspR9I CCNGG 1 cut(s) 31
MunI CAATTG 2 cut(s) 259, 283
Mva1269I GAATGC 2 cut(s) 448, 823
MvnI CGCG 3 cut(s) 78, 414, 497
MwoI GCNNNNNNNGC 5 cut(s) 111, 277, 494, 503, 605
NciI CCSGG 1 cut(s) 31
NcoI CCATGG 3 cut(s) 14, 242, 318
NdeII GATC 5 cut(s) 21, 93, 481, 769, 854
NlaIII CATG 5 cut(s) 18, 246, 255, 322, 874
NlaIV GGNNCC 2 cut(s) 106, 346
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 750
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 2 cut(s) 448, 823
PfeI GAWTC 3 cut(s) 314, 676, 823
PinAI ACCGGT 1 cut(s) 683
PkrI GCNGC 3 cut(s) 639, 642, 760
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp1406I AACGTT 1 cut(s) 142
PspFI CCCAGC 2 cut(s) 66, 340
PspN4I GGNNCC 2 cut(s) 106, 346
PspPI GGNCC 3 cut(s) 104, 167, 681
PstNI CAGNNNCTG 1 cut(s) 91
PvuII CAGCTG 2 cut(s) 340, 761
RsaI GTAC 2 cut(s) 257, 868
RsaNI GTAC 2 cut(s) 256, 867
Rsr2I CGGWCCG 1 cut(s) 681
RsrII CGGWCCG 1 cut(s) 681
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 4 cut(s) 396, 633, 795, 812
SatI GCNGC 3 cut(s) 638, 641, 759
Sau3AI GATC 5 cut(s) 21, 93, 481, 769, 854
Sau96I GGNCC 3 cut(s) 104, 167, 681
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 2 cut(s) 54, 508
SinI GGWCC 1 cut(s) 681
Sse9I AATT 5 cut(s) 259, 283, 709, 765, 838
SsiI CCGC 6 cut(s) 76, 221, 269, 402, 446, 488
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 29
StyI CCWWGG 3 cut(s) 14, 242, 318
TaaI ACNGT 4 cut(s) 49, 392, 431, 877
TaiI ACGT 2 cut(s) 145, 189
TaqI TCGA 8 cut(s) 138, 189, 300, 312, 508, 695, 804, 857
TasI AATT 5 cut(s) 259, 283, 709, 765, 838
TfiI GAWTC 3 cut(s) 314, 676, 823
Tru1I TTAA 4 cut(s) 396, 633, 795, 812
Tru9I TTAA 4 cut(s) 396, 633, 795, 812
TseFI GTSAC 1 cut(s) 750
TseI GCWGC 3 cut(s) 637, 640, 758
Tsp45I GTSAC 1 cut(s) 750
TspDTI ATGAA 2 cut(s) 240, 831
TspGWI ACGGA 1 cut(s) 558
VpaK11BI GGWCC 1 cut(s) 681
XapI RAATTY 2 cut(s) 709, 838
XcmI CCANNNNNNNNNTGG 2 cut(s) 249, 527
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.