pycom17g09890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
7544611 .. 7546930
2320 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
ATGGATTTTGGATTTCCGGACATATTCATCTCTCGTGAGGCTTTTGGCTGGAGTCCCCAGGAAGCTAAGTTGCACATGGTTACTGATTATTTCAGTAATTCAGAGTGGTCGATGATTGCTGAGGTGTTTGGCCCAAACCCACGACACCTATTTGAGCTCTATGCACTCAAGCAGGCCAATTACTATCAACAGTTTGAAGACAACAAAGATAGCACGTTTGAAGACATTGTGGATTCATATTTAGCTTATTTGCAAATTACTGTAGTGAATCCGGCCATGGACAAAGCTCTGGGGCTCCTTCAAAAATTTGCTGCTGATGCACGAAGTGGAAAAATTTCAAAAGATAGACTACGCTTTGGGGCACCTTGGAGACATCCTCCACCTAAAAATGATCCCACCATGTGCCTTGAATGGGCAAAGATTCAGCTGATGGATTTTGTGCAGTCTCTAATCAATGCAGAATTTGGAATTAATTATCTAGCTGACTGTAGCCTTGAGATCATGGACGATCCTTCTGCTGGTGCATTGGTGGAGGTTGGTTTGCTCTATGCTCAACGGGATCCGTCCATCATTCGCCCCATATCTAGAGGCATTCAGCGGTGTATTGTAAGATGTTCAGGCTTGTCCAAGAACGGATGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.32

Weight (kDa)

5.25

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 361
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 1 cut(s) 598
AclWI GGATC 4 cut(s) 386, 503, 554, 567
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 3 cut(s) 305, 333, 461
AdeI CACNNNGTG 2 cut(s) 326, 402
AfiI CCNNNNNNNGG 2 cut(s) 412, 518
AgsI TTSAA 5 cut(s) 197, 221, 302, 339, 410
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 6 cut(s) 65, 157, 245, 287, 427, 482
AluI AGCT 6 cut(s) 65, 157, 245, 287, 427, 482
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 2 cut(s) 364, 450
AlwI GGATC 4 cut(s) 386, 503, 554, 567
Aor13HI TCCGGA 1 cut(s) 16
AoxI GGCC 3 cut(s) 130, 174, 273
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 3 cut(s) 305, 333, 461
AseI ATTAAT 1 cut(s) 471
Asp700I GAANNNNTTC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 364
BamHI GGATCC 1 cut(s) 559
BanI GGYRCC 1 cut(s) 361
BanII GRGCYC 2 cut(s) 159, 297
BauI CACGAG 1 cut(s) 33
BbsI GAAGAC 2 cut(s) 204, 228
Bbv12I GWGCWC 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 298
BccI CCATC 2 cut(s) 424, 575
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BciT130I CCWGG 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 364, 450
BfaI CTAG 2 cut(s) 479, 585
BfmI CTRYAG 2 cut(s) 261, 487
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 3 cut(s) 296, 363, 561
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 2 cut(s) 307, 626
BpiI GAAGAC 2 cut(s) 204, 228
BplI GAGNNNNNCTC 2 cut(s) 361, 393
BpmI CTGGAG 1 cut(s) 70
Bpu10I CCTNAGC 1 cut(s) 120
BpuEI CTTGAG 2 cut(s) 152, 515
BsaJI CCNNGG 3 cut(s) 57, 276, 365
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 518
BseAI TCCGGA 1 cut(s) 16
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 3 cut(s) 57, 276, 365
BseGI GGATG 2 cut(s) 373, 641
BseLI CCNNNNNNNGG 2 cut(s) 412, 518
BseMII CTCAG 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 1 cut(s) 298
BsgI GTGCAG 1 cut(s) 461
BshFI GGCC 3 cut(s) 132, 176, 275
BshNI GGYRCC 1 cut(s) 361
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 2 cut(s) 17, 272
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 412, 518
BsmAI GTCTC 2 cut(s) 364, 450
BsmFI GGGAC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 591
BsnI GGCC 3 cut(s) 132, 176, 275
Bsp1286I GDGCHC 3 cut(s) 159, 297, 364
Bsp13I TCCGGA 1 cut(s) 16
Bsp143I GATC 4 cut(s) 391, 498, 508, 559
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 1 cut(s) 598
BspANI GGCC 3 cut(s) 132, 176, 275
BspCNI CTCAG 1 cut(s) 112
BspEI TCCGGA 1 cut(s) 16
BspLI GGNNCC 3 cut(s) 296, 363, 561
BspPI GGATC 4 cut(s) 386, 503, 554, 567
BspT107I GGYRCC 1 cut(s) 361
BssECI CCNNGG 3 cut(s) 57, 276, 365
BssMI GATC 4 cut(s) 391, 498, 508, 559
BssSI CACGAG 1 cut(s) 33
BssT1I CCWWGG 2 cut(s) 276, 365
Bst2BI CACGAG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 3 cut(s) 192, 262, 488
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 66, 120
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 373, 641
BstKTI GATC 4 cut(s) 394, 501, 511, 562
BstMAI GTCTC 2 cut(s) 364, 450
BstMBI GATC 4 cut(s) 391, 498, 508, 559
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 57
BstSFI CTRYAG 2 cut(s) 261, 487
BstSLI GKGCMC 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 298
BstV2I GAAGAC 2 cut(s) 204, 228
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
BsuRI GGCC 3 cut(s) 132, 176, 275
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 373, 641
Cac8I GCNNGC 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 131
CviAII CATG 4 cut(s) 76, 277, 400, 502
DdeI CTNAG 2 cut(s) 66, 120
DpnI GATC 4 cut(s) 393, 500, 510, 561
DpnII GATC 4 cut(s) 391, 498, 508, 559
DraIII CACNNNGTG 2 cut(s) 326, 402
EaeI YGGCCR 1 cut(s) 273
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 2 cut(s) 276, 365
Eco24I GRGCYC 2 cut(s) 159, 297
Eco53kI GAGCTC 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 2 cut(s) 276, 365
EcoT38I GRGCYC 2 cut(s) 159, 297
ErhI CCWWGG 2 cut(s) 276, 365
FaeI CATG 4 cut(s) 79, 280, 403, 505
FaiI YATR 9 cut(s) 23, 77, 162, 238, 278, 401, 503, 549, 581
FaqI GGGAC 1 cut(s) 39
FatI CATG 4 cut(s) 75, 276, 399, 501
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 1 cut(s) 360
FriOI GRGCYC 2 cut(s) 159, 297
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 2 cut(s) 479, 585
GluI GCNGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 3 cut(s) 132, 176, 275
HapII CCGG 2 cut(s) 17, 272
Hin1II CATG 4 cut(s) 79, 280, 403, 505
HinfI GANTC 4 cut(s) 52, 233, 268, 421
HpaII CCGG 2 cut(s) 17, 272
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 3 cut(s) 17, 35, 585
HpyAV CCTTC 2 cut(s) 308, 522
HpyCH4III ACNGT 3 cut(s) 192, 262, 488
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 8 cut(s) 73, 164, 253, 320, 442, 458, 524, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 2 cut(s) 66, 120
HpySE526I ACGT 1 cut(s) 215
Hsp92II CATG 4 cut(s) 79, 280, 403, 505
Kpn2I TCCGGA 1 cut(s) 16
Kzo9I GATC 4 cut(s) 391, 498, 508, 559
LmnI GCTCC 1 cut(s) 300
LpnPI CCDG 9 cut(s) 30, 34, 44, 71, 158, 275, 285, 504, 603
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 2 cut(s) 307, 626
MaeI CTAG 2 cut(s) 479, 585
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 79
MalI GATC 4 cut(s) 393, 500, 510, 561
MboI GATC 4 cut(s) 391, 498, 508, 559
MboII GAAGA 2 cut(s) 209, 233
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 3 cut(s) 159, 297, 364
MluCI AATT 8 cut(s) 97, 178, 255, 305, 333, 461, 468, 472
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 5 cut(s) 31, 115, 387, 526, 581
MroI TCCGGA 1 cut(s) 16
MroXI GAANNNNTTC 1 cut(s) 334
MseI TTAA 1 cut(s) 471
MspA1I CMGCKG 2 cut(s) 427, 598
MspI CCGG 2 cut(s) 17, 272
MspR9I CCNGG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 591
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 317
NcoI CCATGG 1 cut(s) 276
NdeII GATC 4 cut(s) 391, 498, 508, 559
NlaIII CATG 4 cut(s) 79, 280, 403, 505
NlaIV GGNNCC 3 cut(s) 296, 363, 561
PctI GAATGC 1 cut(s) 591
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 3 cut(s) 233, 268, 421
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PshBI ATTAAT 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 3 cut(s) 296, 363, 561
PspPI GGNCC 1 cut(s) 131
PsuI RGATCY 1 cut(s) 559
PvuII CAGCTG 1 cut(s) 427
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 4 cut(s) 391, 498, 508, 559
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 3 cut(s) 159, 297, 364
SfaNI GCATC 2 cut(s) 307, 626
SfcI CTRYAG 2 cut(s) 261, 487
SmlI CTYRAG 2 cut(s) 167, 494
SmoI CTYRAG 2 cut(s) 167, 494
Sse9I AATT 8 cut(s) 97, 178, 255, 305, 333, 461, 468, 472
SsiI CCGC 1 cut(s) 598
SspMI CTAG 2 cut(s) 479, 585
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 57
StyI CCWWGG 2 cut(s) 276, 365
TaaI ACNGT 3 cut(s) 192, 262, 488
TaiI ACGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 110
TasI AATT 8 cut(s) 97, 178, 255, 305, 333, 461, 468, 472
TfiI GAWTC 3 cut(s) 233, 268, 421
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 16, 225
TspGWI ACGGA 1 cut(s) 552
VspI ATTAAT 1 cut(s) 471
XapI RAATTY 3 cut(s) 305, 333, 461
XbaI TCTAGA 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 334
XspI CTAG 2 cut(s) 479, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.