Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7806687 .. 7806941

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCGCCAGCAACTGTTCTCTTCCTCCTCATAGCTTCCTTCTTCCTTTCACCGCCGACCCACCTGCAAGTCCAAGCTGCCGACCAAGCCTTCGCATCCGTCGTCATCTCCCTAAAGTGTCTCGGTTTTCTCAAGGAATTCCCTTTACCAATCATTCACGGCTTCACCCTTCAAAACGCTGAACTAGTCTGCTCGAGTTCAAGAATCATGGTCTGCGGCGACGTAATATATGTGGCATCGCAATCACAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001530 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009987 GO:0010468 GO:0016020 GO:0019222 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0060255 GO:0065007 GO:0072593 GO:0097367 GO:0098588 GO:0098805 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko04064 ko04620 ko05132 ko05152 map04064 map04620 map05132 map05152

Pfam Domains

Protein Families

LBP_BPI_CETP LBP_BPI_CETP_C

Protein Analysis

85

Amino Acids

9.03

Weight (kDa)

5.98

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	2 cut(s)	53, 216
AcsI	RAATTY	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	2 cut(s)	173, 201
AhlI	ACTAGT	1 cut(s)	184
AluBI	AGCT	2 cut(s)	35, 77
AluI	AGCT	2 cut(s)	35, 77
Alw26I	GTCTC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	137
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	42, 157
AvaI	CYCGRG	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	64
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BcoDI	GTCTC	1 cut(s)	125
BcuI	ACTAGT	1 cut(s)	184
BfaI	CTAG	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	72
BisI	GCNGC	2 cut(s)	78, 217
BlsI	GCNGC	2 cut(s)	79, 218
BmeT110I	CYCGRG	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	2 cut(s)	104, 245
BpuEI	CTTGAG	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	5
BseGI	GGATG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	193
BspACI	CCGC	2 cut(s)	53, 216
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	4
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	16, 249
Bst6I	CTCTTC	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	64
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	95
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	9
CaiI	CAGNNNCTG	1 cut(s)	14
CfoI	GCGC	1 cut(s)	7
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	4 cut(s)	35, 77, 89, 162
CviKI_1	RGCY	4 cut(s)	35, 77, 89, 162
DinI	GGCGCC	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	137
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	211
FaiI	YATR	4 cut(s)	32, 209, 229, 231
FatI	CATG	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	78, 217
FokI	GGATG	1 cut(s)	82
Fsp4HI	GCNGC	2 cut(s)	78, 217
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	78, 217
HaeII	RGCGCY	1 cut(s)	8
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	211
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	204
HphI	GGTGA	2 cut(s)	42, 157
Hpy188III	TCNNGA	1 cut(s)	201
Hpy99I	CGWCG	2 cut(s)	104, 224
HpyAV	CCTTC	3 cut(s)	49, 100, 179
HpyCH4III	ACNGT	2 cut(s)	16, 249
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	211
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
LpnPI	CCDG	2 cut(s)	21, 77
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	2 cut(s)	104, 245
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	222
MboII	GAAGA	2 cut(s)	13, 34
MluCI	AATT	1 cut(s)	137
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	2 cut(s)	35, 38
MseI	TTAA	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	86
NarI	GGCGCC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	193
PaqCI	CACCTGC	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	79, 218
PluTI	GGCGCC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	6
PspXI	VCTCGAGB	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	253
SatI	GCNGC	2 cut(s)	78, 217
SetI	ASST	4 cut(s)	37, 66, 79, 225
SfaNI	GCATC	2 cut(s)	104, 245
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	193
SlaI	CTCGAG	1 cut(s)	193
SmlI	CTYRAG	2 cut(s)	131, 193
SmoI	CTYRAG	2 cut(s)	131, 193
SpeI	ACTAGT	1 cut(s)	184
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	2 cut(s)	53, 216
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	16, 249
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	194
TasI	AATT	1 cut(s)	137
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	253
Tru9I	TTAA	1 cut(s)	253
TseI	GCWGC	1 cut(s)	77
TspGWI	ACGGA	1 cut(s)	88
XapI	RAATTY	1 cut(s)	137
XhoI	CTCGAG	1 cut(s)	193
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.