pycom17g10150

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
7811742 .. 7814138
2397 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
ATGGTTTCTAAAGATTGCTGCCCTAAGGATGTAGGCACACTCGCTAAATCTCGTAAATATTGTGTTTTATCTACTTTATTCTACGCACACATATCTTTATTTTCACAACAACTGCGTGCTAGGTTTCTCGATTCGATACCGGAAGCTCGGTTTTTTTCAGGTTGTGTTCCTCCGTCGAATCCTCCTCCAAGTTTCGCCTATTCGCAAACCAGAGAAACAGAACTAGTAATCATGCCGAAGAACAAGGGTAAGGGAGGAAAGAACAGGAAGAGAGGTAAGAACGAAGCTGATGACGAAAAGCGTGAGCTTGTGTTCAAGGAAGATGGACAGGAGTATGCCCAAGTGCTTCGAATGCTTGGTAACGGTCGGTGTGAAGCCATGTGCATTGATGGGACCAAGCGACTTTGTCACATTCGTGGTAAGATGCACAAGAAGGTTTGGATTGCAGCTGGTGATATCATTCTTGTTGGCCTTCGTGACTATCAGGACGACAAAGCTGATGTGATCCTCAAGTACATGCCTGATGAGGCTAGGCTTCTGAAGGCATATGGAGAGCTTCCAGAGAATACACGTCTCAACGAGGGTATTGCTGGGGGTATTGATGATGAAGAAACTGAAGGTGGTGTTGATGACTATGTTGAGTTTGAGGATGAAGATATCGATAAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

224

Amino Acids

25.16

Weight (kDa)

5.58

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-1a PF01176 109 - 170 7.5e-24 Translation initiation factor 1A / IF-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 499
AcuI CTGAAG 2 cut(s) 560, 636
AfaI GTAC 1 cut(s) 515
AflIII ACRYGT 1 cut(s) 569
AgsI TTSAA 1 cut(s) 316
AhlI ACTAGT 1 cut(s) 223
AjiI CACGTC 1 cut(s) 572
AleI CACNNNNGTG 1 cut(s) 414
AluBI AGCT 6 cut(s) 146, 287, 307, 449, 497, 556
AluI AGCT 6 cut(s) 146, 287, 307, 449, 497, 556
Alw26I GTCTC 1 cut(s) 578
AlwI GGATC 1 cut(s) 499
AoxI GGCC 1 cut(s) 469
ApeKI GCWGC 2 cut(s) 18, 446
AspS9I GGNCC 1 cut(s) 393
AsuHPI GGTGA 1 cut(s) 464
AsuII TTCGAA 1 cut(s) 349
AvaII GGWCC 1 cut(s) 393
AxyI CCTNAGG 1 cut(s) 24
BbvI GCAGC 2 cut(s) 5, 458
BccI CCATC 2 cut(s) 317, 383
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BcoDI GTCTC 1 cut(s) 578
BcuI ACTAGT 1 cut(s) 223
BfaI CTAG 3 cut(s) 120, 224, 531
BisI GCNGC 2 cut(s) 19, 447
BlsI GCNGC 2 cut(s) 20, 448
Bme18I GGWCC 1 cut(s) 393
BmgBI CACGTC 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 1 cut(s) 394
BmsI GCATC 1 cut(s) 414
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 660
BsaWI WCCGGW 1 cut(s) 139
Bse21I CCTNAGG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 660
BseGI GGATG 2 cut(s) 34, 655
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 2 cut(s) 5, 458
BseYI CCCAGC 1 cut(s) 590
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 1 cut(s) 471
BshVI ATCGAT 1 cut(s) 660
BsiEI CGRYCG 1 cut(s) 367
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 406
BsmAI GTCTC 1 cut(s) 578
BsmBI CGTCTC 1 cut(s) 578
BsmFI GGGAC 1 cut(s) 406
BsmI GAATGC 1 cut(s) 357
BsnI GGCC 1 cut(s) 471
Bsp119I TTCGAA 1 cut(s) 349
Bsp143I GATC 1 cut(s) 504
BspANI GGCC 1 cut(s) 471
BspDI ATCGAT 1 cut(s) 660
BspLI GGNNCC 1 cut(s) 394
BspPI GGATC 1 cut(s) 499
BspT104I TTCGAA 1 cut(s) 349
BssMI GATC 1 cut(s) 504
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 1 cut(s) 263
BstBI TTCGAA 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 2 cut(s) 34, 655
BstKTI GATC 1 cut(s) 507
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 1 cut(s) 504
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 1 cut(s) 352
BstNSI RCATGY 1 cut(s) 520
BstV1I GCAGC 2 cut(s) 5, 458
Bsu15I ATCGAT 1 cut(s) 660
Bsu36I CCTNAGG 1 cut(s) 24
BsuRI GGCC 1 cut(s) 471
BsuTUI ATCGAT 1 cut(s) 660
BtrI CACGTC 1 cut(s) 572
BtsCI GGATG 2 cut(s) 34, 655
Cac8I GCNNGC 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 393
ClaI ATCGAT 1 cut(s) 660
Csp6I GTAC 1 cut(s) 514
CviAII CATG 3 cut(s) 232, 379, 517
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 1 cut(s) 24
DpnI GATC 1 cut(s) 506
DpnII GATC 1 cut(s) 504
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco32I GATATC 2 cut(s) 457, 658
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 2 cut(s) 560, 636
Eco81I CCTNAGG 1 cut(s) 24
EcoRV GATATC 2 cut(s) 457, 658
Esp3I CGTCTC 1 cut(s) 578
FaeI CATG 3 cut(s) 235, 382, 520
FaiI YATR 9 cut(s) 92, 233, 336, 380, 518, 547, 549, 636, 670
FaqI GGGAC 1 cut(s) 406
FatI CATG 3 cut(s) 231, 378, 516
FauNDI CATATG 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 19, 447
FokI GGATG 2 cut(s) 41, 662
Fsp4HI GCNGC 2 cut(s) 19, 447
FspBI CTAG 3 cut(s) 120, 224, 531
GluI GCNGC 2 cut(s) 19, 447
GsaI CCCAGC 1 cut(s) 594
HaeIII GGCC 1 cut(s) 471
HapII CCGG 1 cut(s) 140
Hin1II CATG 3 cut(s) 235, 382, 520
HinfI GANTC 2 cut(s) 131, 178
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 464
Hpy188I TCNGA 1 cut(s) 540
Hpy188III TCNNGA 4 cut(s) 128, 476, 485, 560
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 4 cut(s) 427, 482, 535, 611
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 3 cut(s) 384, 427, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 352
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 3 cut(s) 235, 382, 520
Kzo9I GATC 1 cut(s) 504
Lsp1109I GCAGC 2 cut(s) 5, 458
LweI GCATC 1 cut(s) 414
MaeI CTAG 3 cut(s) 120, 224, 531
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 3 cut(s) 359, 407, 476
MalI GATC 1 cut(s) 506
MboI GATC 1 cut(s) 504
MboII GAAGA 5 cut(s) 250, 280, 332, 620, 665
MnlI CCTC 9 cut(s) 180, 192, 195, 248, 266, 518, 520, 574, 640
MslI CAYNNNNRTG 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 352
NdeI CATATG 1 cut(s) 547
NdeII GATC 1 cut(s) 504
NlaIII CATG 3 cut(s) 235, 382, 520
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 2 cut(s) 407, 476
NspI RCATGY 1 cut(s) 520
NspV TTCGAA 1 cut(s) 349
OliI CACNNNNGTG 1 cut(s) 414
PctI GAATGC 1 cut(s) 357
PfeI GAWTC 2 cut(s) 131, 178
PflFI GACNNNGTC 1 cut(s) 405
PkrI GCNGC 2 cut(s) 20, 448
PspFI CCCAGC 1 cut(s) 590
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 1 cut(s) 393
PsyI GACNNNGTC 1 cut(s) 405
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
RseI CAYNNNNRTG 1 cut(s) 414
SatI GCNGC 2 cut(s) 19, 447
Sau3AI GATC 1 cut(s) 504
Sau96I GGNCC 1 cut(s) 393
SfaNI GCATC 1 cut(s) 414
SfuI TTCGAA 1 cut(s) 349
SinI GGWCC 1 cut(s) 393
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
SpeI ACTAGT 1 cut(s) 223
SspI AATATT 1 cut(s) 59
SspMI CTAG 3 cut(s) 120, 224, 531
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 1 cut(s) 574
TaqI TCGA 5 cut(s) 129, 134, 176, 349, 660
TatI WGTACW 1 cut(s) 513
TfiI GAWTC 2 cut(s) 131, 178
TseFI GTSAC 2 cut(s) 407, 476
TseI GCWGC 2 cut(s) 18, 446
Tsp45I GTSAC 2 cut(s) 407, 476
TspDTI ATGAA 2 cut(s) 621, 666
TspGWI ACGGA 1 cut(s) 162
Tth111I GACNNNGTC 1 cut(s) 405
VpaK11BI GGWCC 1 cut(s) 393
XceI RCATGY 1 cut(s) 520
XspI CTAG 3 cut(s) 120, 224, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.