pycom17g10760

SNF1-related protein kinase regulatory subunit beta-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Reverse (-)
8338650 .. 8340067
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 339 bp
ATGGTAATGGGGAATCCAAGTGGGAGTAGAGATGATGGAGAAGGTCCTCCTGGAGTTAACAACTTTGGAGAGTACTGTGATGGATATGTAGAAGAATCCATGTCTCGGAGCCCATCTCTTTTCTTCACTTCCCAGTATCCTGGGGAACCCTTACCAAGACCTGCTGAGGCATCACCGCAACATACAGTAGTTAATCGTAATGTACACGATGAGAAATTGATGTGGACGAAGATCGATCATGGAATCACGGTGGAAAGCAAGTTGCCATCACAGGATCATGGGACAATTGGGAGAGTAGGGAGCTCTTGCAGGGTAGAGGCAATGATTTCCTTACCATAA

Protein Analysis

113

Amino Acids

12.19

Weight (kDa)

5.04

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 282
AfaI GTAC 2 cut(s) 74, 204
AfiI CCNNNNNNNGG 1 cut(s) 105
AjnI CCWGG 2 cut(s) 49, 139
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 165
AvaII GGWCC 1 cut(s) 44
BanII GRGCYC 2 cut(s) 113, 305
Bbv12I GWGCWC 1 cut(s) 305
BbvCI CCTCAGC 1 cut(s) 165
BccI CCATC 4 cut(s) 29, 74, 121, 274
BciT130I CCWGG 2 cut(s) 51, 141
BciVI GTATCC 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 147
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 2 cut(s) 51, 141
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 110, 147
BmrFI CCNGG 2 cut(s) 51, 141
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 179
BmuI ACTGGG 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 100, 132
BpmI CTGGAG 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 165
Bsa29I ATCGAT 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 327
BseBI CCWGG 2 cut(s) 51, 141
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 305
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 113, 305
Bsp1407I TGTACA 1 cut(s) 202
Bsp143I GATC 3 cut(s) 231, 235, 274
BspACI CCGC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 157
BspDI ATCGAT 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 110, 147
BspMI ACCTGC 1 cut(s) 169
BspPI GGATC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 327
BsrGI TGTACA 1 cut(s) 202
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 3 cut(s) 231, 235, 274
Bst2UI CCWGG 2 cut(s) 51, 141
Bst4CI ACNGT 3 cut(s) 77, 187, 250
BstAUI TGTACA 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 165
BstKTI GATC 3 cut(s) 234, 238, 277
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 3 cut(s) 231, 235, 274
BstNI CCWGG 2 cut(s) 51, 141
BstSCI CCNGG 2 cut(s) 49, 139
BstXI CCANNNNNNTGG 1 cut(s) 140
Bsu15I ATCGAT 1 cut(s) 234
BsuI GTATCC 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 234
BveI ACCTGC 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 44
ClaI ATCGAT 1 cut(s) 234
Csp6I GTAC 2 cut(s) 73, 203
CviAII CATG 3 cut(s) 100, 239, 278
CviJI RGCY 2 cut(s) 111, 303
CviKI_1 RGCY 2 cut(s) 111, 303
CviQI GTAC 2 cut(s) 73, 203
DdeI CTNAG 1 cut(s) 165
DpnI GATC 3 cut(s) 233, 237, 276
DpnII GATC 3 cut(s) 231, 235, 274
Ecl136II GAGCTC 1 cut(s) 303
Eco24I GRGCYC 2 cut(s) 113, 305
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 49, 139
EcoT38I GRGCYC 2 cut(s) 113, 305
FaeI CATG 3 cut(s) 103, 242, 281
FaiI YATR 6 cut(s) 87, 101, 183, 240, 279, 337
FaqI GGGAC 1 cut(s) 295
FatI CATG 3 cut(s) 99, 238, 277
FriOI GRGCYC 2 cut(s) 113, 305
GsuI CTGGAG 1 cut(s) 72
Hin1II CATG 3 cut(s) 103, 242, 281
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 3 cut(s) 13, 95, 243
HpaI GTTAAC 1 cut(s) 58
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 3 cut(s) 58, 205, 225
Hpy188I TCNGA 1 cut(s) 108
Hpy8I GTNNAC 3 cut(s) 58, 205, 225
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 3 cut(s) 77, 187, 250
HpyCH4V TGCA 1 cut(s) 309
HpyF3I CTNAG 1 cut(s) 165
Hsp92II CATG 3 cut(s) 103, 242, 281
KspAI GTTAAC 1 cut(s) 58
Kzo9I GATC 3 cut(s) 231, 235, 274
LmnI GCTCC 2 cut(s) 108, 300
LpnPI CCDG 8 cut(s) 36, 63, 126, 146, 153, 174, 257, 295
LweI GCATC 1 cut(s) 179
MalI GATC 3 cut(s) 233, 237, 276
MboI GATC 3 cut(s) 231, 235, 274
MboII GAAGA 3 cut(s) 104, 115, 241
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 2 cut(s) 113, 305
MluCI AATT 2 cut(s) 215, 285
MnlI CCTC 3 cut(s) 57, 160, 310
MseI TTAA 2 cut(s) 57, 192
MspR9I CCNGG 2 cut(s) 51, 141
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 2 cut(s) 51, 141
NdeII GATC 3 cut(s) 231, 235, 274
NlaIII CATG 3 cut(s) 103, 242, 281
NlaIV GGNNCC 2 cut(s) 110, 147
PfeI GAWTC 3 cut(s) 13, 95, 243
PfoI TCCNGGA 1 cut(s) 49
PpuMI RGGWCCY 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 305
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 2 cut(s) 49, 139
PspGI CCWGG 2 cut(s) 49, 139
PspN4I GGNNCC 2 cut(s) 110, 147
PspPI GGNCC 1 cut(s) 44
PspPPI RGGWCCY 1 cut(s) 44
RsaI GTAC 2 cut(s) 74, 204
RsaNI GTAC 2 cut(s) 73, 203
SacI GAGCTC 1 cut(s) 305
SaqAI TTAA 2 cut(s) 57, 192
Sau3AI GATC 3 cut(s) 231, 235, 274
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 51, 141
SduI GDGCHC 2 cut(s) 113, 305
SetI ASST 3 cut(s) 46, 163, 305
SfaNI GCATC 1 cut(s) 179
SinI GGWCC 1 cut(s) 44
Sse9I AATT 2 cut(s) 215, 285
SsiI CCGC 1 cut(s) 176
SstI GAGCTC 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 49, 139
TaaI ACNGT 3 cut(s) 77, 187, 250
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 215, 285
TatI WGTACW 2 cut(s) 72, 202
TfiI GAWTC 3 cut(s) 13, 95, 243
Tru1I TTAA 2 cut(s) 57, 192
Tru9I TTAA 2 cut(s) 57, 192
VpaK11BI GGWCC 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.