Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

8381899 .. 8382300

Gene Structure 402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCCGATTCGGATAACGACTCGGGAGGGCCCAACGACGTCAGCCACGGGCAGAGCGGGGAGTTGTCCGCGCGTGAGCAGGACCGCTTCCTGCCGATCGCGAACGTGAGCCGGATCATGAAGAAGGCGCTGCCGGCGAACGCAAAGATATCCAAGGACGCGAAGGAGACGCTGCAGGAGTGCGTGTCGGAGTTCATCAGTTTCGTCACTGGTGAGGCCTCCGACAAGTGCCAGAGGGAGAAGAGGAAGACGATCGAACGGCGACGATTTGCTATGGGCGATGACCACGTTGGGGTTCGAGGAGTACGTGGAGCCGCTCAAGATTTATTTGCAAAAGTATCGGGAGATGGAGGGCGAGAAGAGCACCATGGGCGGCGGAGGTGGCGGCAGAGAGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

134

Amino Acids

14.88

Weight (kDa)

9.34

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	30 - 86	1.6e-23	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccBSI	CCGCTC	2 cut(s)	57, 317
AccII	CGCG	4 cut(s)	71, 73, 101, 161
AciI	CCGC	7 cut(s)	57, 69, 85, 315, 373, 376, 385
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	292
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	3, 29, 216
ApaI	GGGCCC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	130, 172
AspLEI	GCGC	2 cut(s)	73, 130
AspS9I	GGNCC	3 cut(s)	29, 30, 82
AsuHPI	GGTGA	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	117, 159
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	275
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BcoDI	GTCTC	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	131
BisI	GCNGC	5 cut(s)	131, 173, 315, 374, 386
BlsI	GCNGC	5 cut(s)	132, 174, 316, 375, 387
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	29, 30, 82
BmiI	GGNNCC	2 cut(s)	31, 313
BpiI	GAAGAC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	46, 153, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	214
BseDI	CCNNGG	3 cut(s)	46, 153, 367
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	315
BseSI	GKGCMC	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	117, 159
Bsh1236I	CGCG	4 cut(s)	71, 73, 101, 161
Bsh1285I	CGRYCG	2 cut(s)	99, 255
BshFI	GGCC	3 cut(s)	5, 31, 218
BsiEI	CGRYCG	2 cut(s)	99, 255
BsiHKAI	GWGCWC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	112, 134
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	161
BsmBI	CGTCTC	1 cut(s)	161
BsnI	GGCC	3 cut(s)	5, 31, 218
BsoBI	CYCGRG	1 cut(s)	22
Bsp120I	GGGCCC	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	33, 366
Bsp143I	GATC	3 cut(s)	96, 114, 252
Bsp19I	CCATGG	1 cut(s)	367
Bsp68I	TCGCGA	1 cut(s)	101
BspACI	CCGC	7 cut(s)	57, 69, 85, 315, 373, 376, 385
BspANI	GGCC	3 cut(s)	5, 31, 218
BspFNI	CGCG	4 cut(s)	71, 73, 101, 161
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	31, 313
BspMAI	CTGCAG	1 cut(s)	177
BspPI	GGATC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	354
BsrBI	CCGCTC	2 cut(s)	57, 317
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	46, 153, 367
BssMI	GATC	3 cut(s)	96, 114, 252
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	153, 367
Bst6I	CTCTTC	2 cut(s)	236, 354
BstACI	GRCGYC	1 cut(s)	39
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	135
BstDSI	CCRYGG	2 cut(s)	46, 367
BstFNI	CGCG	4 cut(s)	71, 73, 101, 161
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	73, 130
BstKTI	GATC	3 cut(s)	99, 117, 255
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	3 cut(s)	96, 114, 252
BstMCI	CGRYCG	2 cut(s)	99, 255
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 361, 370, 382
BstSFI	CTRYAG	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	33
BstUI	CGCG	4 cut(s)	71, 73, 101, 161
BstV1I	GCAGC	2 cut(s)	117, 159
BstV2I	GAAGAC	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	5, 31, 218
BtgI	CCRYGG	2 cut(s)	46, 367
BtgZI	GCGATG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	207
BtuMI	TCGCGA	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	2 cut(s)	73, 130
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	3 cut(s)	29, 30, 82
CseI	GACGC	2 cut(s)	167, 178
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	2 cut(s)	118, 368
CviJI	RGCY	6 cut(s)	5, 31, 45, 111, 218, 314
CviKI_1	RGCY	6 cut(s)	5, 31, 45, 111, 218, 314
CviQI	GTAC	1 cut(s)	305
DpnI	GATC	3 cut(s)	98, 116, 254
DpnII	GATC	3 cut(s)	96, 114, 252
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	236, 354
EarI	CTCTTC	2 cut(s)	236, 354
EciI	GGCGGA	1 cut(s)	391
Eco130I	CCWWGG	2 cut(s)	153, 367
Eco147I	AGGCCT	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	150
EcoT14I	CCWWGG	2 cut(s)	153, 367
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	2 cut(s)	153, 367
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	2 cut(s)	121, 371
FaiI	YATR	3 cut(s)	119, 275, 369
FatI	CATG	2 cut(s)	117, 367
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	5 cut(s)	131, 173, 315, 374, 386
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	5 cut(s)	131, 173, 315, 374, 386
GlaI	GCGC	2 cut(s)	72, 129
GluI	GCNGC	5 cut(s)	131, 173, 315, 374, 386
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	3 cut(s)	5, 31, 218
HapII	CCGG	2 cut(s)	112, 134
HgaI	GACGC	2 cut(s)	167, 178
HhaI	GCGC	2 cut(s)	73, 130
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	121, 371
Hin6I	GCGC	2 cut(s)	71, 128
HinP1I	GCGC	2 cut(s)	71, 128
HinfI	GANTC	2 cut(s)	8, 20
HpaII	CCGG	2 cut(s)	112, 134
HphI	GGTGA	1 cut(s)	224
Hpy188I	TCNGA	3 cut(s)	13, 190, 223
Hpy188III	TCNNGA	5 cut(s)	24, 100, 118, 320, 342
Hpy99I	CGWCG	2 cut(s)	41, 267
HpyAV	CCTTC	2 cut(s)	118, 157
HpyCH4IV	ACGT	4 cut(s)	39, 105, 288, 307
HpyCH4V	TGCA	2 cut(s)	175, 332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 361, 370, 382
HpySE526I	ACGT	4 cut(s)	39, 105, 288, 307
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	121, 371
HspAI	GCGC	2 cut(s)	71, 128
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	96, 114, 252
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	7 cut(s)	65, 104, 125, 147, 161, 195, 245
Lsp1109I	GCAGC	2 cut(s)	117, 159
MaeII	ACGT	4 cut(s)	39, 105, 288, 307
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	3 cut(s)	98, 116, 254
MbiI	CCGCTC	2 cut(s)	57, 317
MboI	GATC	3 cut(s)	96, 114, 252
MboII	GAAGA	4 cut(s)	133, 253, 259, 371
MhlI	GDGCHC	2 cut(s)	33, 366
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	168, 246
MnlI	CCTC	8 cut(s)	20, 208, 228, 229, 237, 293, 344, 372
MroNI	GCCGGC	1 cut(s)	133
MspI	CCGG	2 cut(s)	112, 134
MvnI	CGCG	4 cut(s)	71, 73, 101, 161
MwoI	GCNNNNNNNGC	4 cut(s)	134, 361, 370, 382
NaeI	GCCGGC	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	367
NdeII	GATC	3 cut(s)	96, 114, 252
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	121, 371
NlaIV	GGNNCC	2 cut(s)	31, 313
NmuCI	GTSAC	1 cut(s)	205
NruI	TCGCGA	1 cut(s)	101
PagI	TCATGA	1 cut(s)	117
PceI	AGGCCT	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PdiI	GCCGGC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	5 cut(s)	132, 174, 316, 375, 387
Ple19I	CGATCG	2 cut(s)	99, 255
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
Ppu21I	YACGTR	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	31, 313
PspOMI	GGGCCC	1 cut(s)	29
PspPI	GGNCC	3 cut(s)	29, 30, 82
PstI	CTGCAG	1 cut(s)	177
PvuI	CGATCG	2 cut(s)	99, 255
RruI	TCGCGA	1 cut(s)	101
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	354
SatI	GCNGC	5 cut(s)	131, 173, 315, 374, 386
Sau3AI	GATC	3 cut(s)	96, 114, 252
Sau96I	GGNCC	3 cut(s)	29, 30, 82
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	33, 366
SetI	ASST	5 cut(s)	42, 108, 291, 310, 383
SfcI	CTRYAG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
SseBI	AGGCCT	1 cut(s)	218
SsiI	CCGC	7 cut(s)	57, 69, 85, 315, 373, 376, 385
StuI	AGGCCT	1 cut(s)	218
StyI	CCWWGG	2 cut(s)	153, 367
TaiI	ACGT	4 cut(s)	42, 108, 291, 310
TaqI	TCGA	2 cut(s)	255, 298
TauI	GCSGC	3 cut(s)	317, 376, 388
TfiI	GAWTC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	130, 172
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	134, 184
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	82
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.