pycom17g10930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
8493824 .. 8494495
672 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 483 bp
ATGATGGGTCGGTCCCCATTTGCCAGAACTGGAGGCTTTAGGCCTGAGAATTTGGGCCCCAATGCCCTTGCCTTGATTGGGAACCTTTCATTGCCGCTACCTATGAACCCGAAGACCCGTTGTTTCATCCGTCAACCAAGATCACCACATTCCTTACATCCAAATCCAATGCCACTTTCAAGTCCGATGACACTGTGGTCCGGACTGGTGAGAATTTCTTGGGTGATAGCTCGACTACTGAGAATTCTGAAGCAGAATCGGCTAGTTGTGAGGGTCCCATTGATTGCAGGGACCCGGAAGATATTCATTTTTACCGGTTTGGGAAACCAGTGCGGGGTTCGGATGTTAACAGTTGTGATATGGCTTGGCGGTTTAGGCCTAAGGAAGGGAAGACTGCTTCTTTTTACAAGGACTATCGGAGGTTTATGGAGAGTACCATACTGGAGTAAATGCCAGGAAGAGGAAGAAGAAGGCCGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

161

Amino Acids

18.03

Weight (kDa)

11.81

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 196
AccIII TCCGGA 1 cut(s) 200
AciI CCGC 3 cut(s) 95, 333, 369
AcsI RAATTY 3 cut(s) 49, 213, 243
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 4 cut(s) 78, 334, 385, 460
AgeI ACCGGT 1 cut(s) 314
AgsI TTSAA 1 cut(s) 180
AjnI CCWGG 1 cut(s) 453
AjuI GAANNNNNNNTTGG 2 cut(s) 160, 192
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Aor13HI TCCGGA 1 cut(s) 200
AoxI GGCC 4 cut(s) 41, 55, 376, 472
ApaI GGGCCC 1 cut(s) 59
ApoI RAATTY 3 cut(s) 49, 213, 243
AsiGI ACCGGT 1 cut(s) 314
Asp700I GAANNNNTTC 1 cut(s) 302
AspS9I GGNCC 6 cut(s) 12, 55, 56, 198, 274, 291
AsuC2I CCSGG 1 cut(s) 295
AsuHPI GGTGA 3 cut(s) 135, 220, 235
AvaII GGWCC 4 cut(s) 12, 198, 274, 291
AxyI CCTNAGG 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 119, 397
BciT130I CCWGG 1 cut(s) 455
BcnI CCSGG 1 cut(s) 295
BfaI CTAG 1 cut(s) 263
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 2 cut(s) 295, 455
Bme18I GGWCC 4 cut(s) 12, 198, 274, 291
BmgT120I GGNCC 6 cut(s) 12, 55, 56, 198, 274, 291
BmiI GGNNCC 8 cut(s) 14, 57, 58, 83, 275, 276, 292, 293
BmrFI CCNGG 2 cut(s) 295, 455
BpiI GAAGAC 2 cut(s) 119, 397
BpmI CTGGAG 2 cut(s) 51, 463
BpuMI CCSGG 1 cut(s) 295
BsaWI WCCGGW 2 cut(s) 200, 314
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 334, 385, 460
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 4 cut(s) 34, 210, 328, 446
Bse21I CCTNAGG 1 cut(s) 380
Bse3DI GCAATG 1 cut(s) 89
BseAI TCCGGA 1 cut(s) 200
BseBI CCWGG 1 cut(s) 455
BseGI GGATG 3 cut(s) 126, 157, 348
BseLI CCNNNNNNNGG 4 cut(s) 78, 334, 385, 460
BseMI GCAATG 1 cut(s) 89
BseMII CTCAG 2 cut(s) 36, 230
BseNI ACTGG 4 cut(s) 34, 210, 328, 446
BseSI GKGCMC 1 cut(s) 59
BshFI GGCC 4 cut(s) 43, 57, 378, 474
BshTI ACCGGT 1 cut(s) 314
BsiSI CCGG 4 cut(s) 201, 295, 315, 475
BslFI GGGAC 2 cut(s) 260, 304
BslI CCNNNNNNNGG 4 cut(s) 78, 334, 385, 460
BsmFI GGGAC 2 cut(s) 260, 304
BsnI GGCC 4 cut(s) 43, 57, 378, 474
Bsp120I GGGCCC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 59
Bsp13I TCCGGA 1 cut(s) 200
Bsp143I GATC 1 cut(s) 140
BspACI CCGC 3 cut(s) 95, 333, 369
BspANI GGCC 4 cut(s) 43, 57, 378, 474
BspCNI CTCAG 2 cut(s) 37, 231
BspEI TCCGGA 1 cut(s) 200
BspLI GGNNCC 8 cut(s) 14, 57, 58, 83, 275, 276, 292, 293
BsrDI GCAATG 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 4 cut(s) 34, 210, 328, 446
BssAI RCCGGY 1 cut(s) 314
BssMI GATC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 2 cut(s) 195, 352
Bst6I CTCTTC 1 cut(s) 453
BstDEI CTNAG 3 cut(s) 45, 239, 380
BstENI CCTNNNNNAGG 1 cut(s) 383
BstF5I GGATG 3 cut(s) 126, 157, 348
BstKTI GATC 1 cut(s) 143
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 2 cut(s) 259, 375
BstNI CCWGG 1 cut(s) 455
BstSCI CCNGG 2 cut(s) 293, 453
BstSLI GKGCMC 1 cut(s) 59
BstV2I GAAGAC 2 cut(s) 119, 397
Bsu36I CCTNAGG 1 cut(s) 380
BsuRI GGCC 4 cut(s) 43, 57, 378, 474
BtsCI GGATG 3 cut(s) 126, 157, 348
BtsIMutI CAGTG 2 cut(s) 191, 335
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 6 cut(s) 12, 55, 56, 198, 274, 291
Csp6I GTAC 1 cut(s) 434
CspAI ACCGGT 1 cut(s) 314
CviJI RGCY 8 cut(s) 36, 43, 57, 230, 262, 364, 378, 474
CviKI_1 RGCY 8 cut(s) 36, 43, 57, 230, 262, 364, 378, 474
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 3 cut(s) 45, 239, 380
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
DrdI GACNNNNNNGTC 1 cut(s) 196
DseDI GACNNNNNNGTC 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
Eco147I AGGCCT 2 cut(s) 43, 378
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 4 cut(s) 12, 198, 274, 291
Eco57I CTGAAG 1 cut(s) 269
Eco81I CCTNAGG 1 cut(s) 380
EcoNI CCTNNNNNAGG 1 cut(s) 383
EcoO109I RGGNCCY 3 cut(s) 56, 274, 291
EcoRI GAATTC 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 59
FaiI YATR 4 cut(s) 104, 361, 427, 439
FaqI GGGAC 2 cut(s) 260, 304
FauI CCCGC 1 cut(s) 326
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 3 cut(s) 113, 144, 355
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 1 cut(s) 263
GluI GCNGC 1 cut(s) 95
GsuI CTGGAG 2 cut(s) 51, 463
HaeIII GGCC 4 cut(s) 43, 57, 378, 474
HapII CCGG 4 cut(s) 201, 295, 315, 475
HincII GTYRAC 2 cut(s) 134, 348
HindII GTYRAC 2 cut(s) 134, 348
HinfI GANTC 1 cut(s) 256
HpaI GTTAAC 1 cut(s) 348
HpaII CCGG 4 cut(s) 201, 295, 315, 475
HphI GGTGA 3 cut(s) 135, 220, 235
Hpy166II GTNNAC 2 cut(s) 134, 348
Hpy188I TCNGA 4 cut(s) 186, 249, 342, 419
Hpy188III TCNNGA 1 cut(s) 201
Hpy8I GTNNAC 2 cut(s) 134, 348
HpyAV CCTTC 2 cut(s) 379, 464
HpyCH4III ACNGT 2 cut(s) 195, 352
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 259, 375
HpyF3I CTNAG 3 cut(s) 45, 239, 380
KflI GGGWCCC 2 cut(s) 274, 291
Kpn2I TCCGGA 1 cut(s) 200
KspAI GTTAAC 1 cut(s) 348
Kzo9I GATC 1 cut(s) 140
MaeI CTAG 1 cut(s) 263
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 6 cut(s) 124, 310, 402, 470, 476, 479
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 3 cut(s) 49, 213, 243
MnlI CCTC 4 cut(s) 26, 264, 413, 454
MroI TCCGGA 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 1 cut(s) 347
MspI CCGG 4 cut(s) 201, 295, 315, 475
MspR9I CCNGG 2 cut(s) 295, 455
MvaI CCWGG 1 cut(s) 455
MwoI GCNNNNNNNGC 2 cut(s) 259, 375
NciI CCSGG 1 cut(s) 295
NdeII GATC 1 cut(s) 140
NlaIV GGNNCC 8 cut(s) 14, 57, 58, 83, 275, 276, 292, 293
PceI AGGCCT 2 cut(s) 43, 378
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 256
PinAI ACCGGT 1 cut(s) 314
PkrI GCNGC 1 cut(s) 96
PpuMI RGGWCCY 2 cut(s) 274, 291
Psp5II RGGWCCY 2 cut(s) 274, 291
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 8 cut(s) 14, 57, 58, 83, 275, 276, 292, 293
PspOMI GGGCCC 1 cut(s) 55
PspPI GGNCC 6 cut(s) 12, 55, 56, 198, 274, 291
PspPPI RGGWCCY 2 cut(s) 274, 291
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 6 cut(s) 12, 55, 56, 198, 274, 291
ScrFI CCNGG 2 cut(s) 295, 455
SduI GDGCHC 1 cut(s) 59
SetI ASST 4 cut(s) 87, 103, 232, 424
SinI GGWCC 4 cut(s) 12, 198, 274, 291
Sse9I AATT 3 cut(s) 49, 213, 243
SseBI AGGCCT 2 cut(s) 43, 378
SsiI CCGC 3 cut(s) 95, 333, 369
SspMI CTAG 1 cut(s) 263
StuI AGGCCT 2 cut(s) 43, 378
StyD4I CCNGG 2 cut(s) 293, 453
TaaI ACNGT 2 cut(s) 195, 352
TaqI TCGA 1 cut(s) 232
TasI AATT 3 cut(s) 49, 213, 243
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TscAI CASTG 2 cut(s) 198, 335
TspDTI ATGAA 4 cut(s) 78, 115, 119, 295
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 2 cut(s) 198, 335
VpaK11BI GGWCC 4 cut(s) 12, 198, 274, 291
XagI CCTNNNNNAGG 1 cut(s) 383
XapI RAATTY 3 cut(s) 49, 213, 243
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.