pycom17g10940

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
8494549 .. 8495061
513 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ATGATACCCTACCGGTGGTTGAGTCTGAAGTTTCATTCAGTCATGGGAAATACTTACTATATACGGGTGGTGGAGATAGGTGCAAGATACCTGAACCGAACTTTGGTCATGGAATTGACTCTTTGTCTGTCTTCGATTTACACTTCATCTAATCAAGATGAGGAAGGGAAGGACTTCAGGTTTTACTTTGACTTTGATTTTGGACAGATTGGGAAAAATGGCAGAAGAAAGACGGGTTGGGTCTGCATCTTGTGGAGGATTATAGGTTTGGGTCTGTGGAGCCAGACAATTATTGGTACAGGGTGTGTGAAGGGGAGACAGAGTCCGTTGTTCAACGACCATGGCATTTGGTGTGGAAATCGAGAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

124

Amino Acids

14.27

Weight (kDa)

9.21

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7075 PF23272 27 - 67 1.6e-07 Domain of unknown function (DUF7075)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 47, 160
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 2 cut(s) 15, 103
AgeI ACCGGT 1 cut(s) 12
AgsI TTSAA 1 cut(s) 334
AhdI GACNNNNNGTC 1 cut(s) 123
AjuI GAANNNNNNNTTGG 4 cut(s) 86, 118, 220, 252
Alw26I GTCTC 1 cut(s) 310
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AsiGI ACCGGT 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 310
BmeRI GACNNNNNGTC 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 281
BmsI GCATC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 340
BsaWI WCCGGW 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 307, 337
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 103
Bse118I RCCGGY 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 340
BseLI CCNNNNNNNGG 2 cut(s) 15, 103
BshTI ACCGGT 1 cut(s) 12
BsiSI CCGG 1 cut(s) 13
BslI CCNNNNNNNGG 2 cut(s) 15, 103
BsmAI GTCTC 1 cut(s) 310
Bsp19I CCATGG 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 12
BssAI RCCGGY 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 340
BstDSI CCRYGG 1 cut(s) 340
BstMAI GTCTC 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 340
Cfr10I RCCGGY 1 cut(s) 12
Csp6I GTAC 1 cut(s) 297
CspAI ACCGGT 1 cut(s) 12
CviAII CATG 3 cut(s) 43, 109, 341
CviJI RGCY 1 cut(s) 282
CviKI_1 RGCY 1 cut(s) 282
CviQI GTAC 1 cut(s) 297
DriI GACNNNNNGTC 1 cut(s) 123
Eam1105I GACNNNNNGTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 340
Eco57I CTGAAG 2 cut(s) 47, 160
EcoT14I CCWWGG 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 340
FaeI CATG 3 cut(s) 46, 112, 344
FaiI YATR 6 cut(s) 44, 60, 62, 110, 263, 342
FatI CATG 3 cut(s) 42, 108, 340
HapII CCGG 1 cut(s) 13
Hin1II CATG 3 cut(s) 46, 112, 344
HinfI GANTC 3 cut(s) 22, 118, 322
HpaII CCGG 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 2 cut(s) 155, 362
HpyAV CCTTC 4 cut(s) 158, 163, 304, 359
HpyCH4V TGCA 2 cut(s) 83, 246
Hsp92II CATG 3 cut(s) 46, 112, 344
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 5 cut(s) 26, 104, 163, 285, 296
LweI GCATC 1 cut(s) 255
MboII GAAGA 2 cut(s) 123, 237
MluCI AATT 2 cut(s) 113, 288
MlyI GAGTC 3 cut(s) 31, 112, 331
MnlI CCTC 2 cut(s) 154, 249
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 1 cut(s) 370
MspI CCGG 1 cut(s) 13
NcoI CCATGG 1 cut(s) 340
NlaIII CATG 3 cut(s) 46, 112, 344
NlaIV GGNNCC 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 173
PflFI GACNNNGTC 1 cut(s) 321
PinAI ACCGGT 1 cut(s) 12
PleI GAGTC 3 cut(s) 30, 112, 330
PpsI GAGTC 3 cut(s) 30, 112, 330
PspN4I GGNNCC 1 cut(s) 281
PsyI GACNNNGTC 1 cut(s) 321
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 370
SchI GAGTC 3 cut(s) 31, 112, 331
SetI ASST 5 cut(s) 82, 93, 182, 268, 370
SfaNI GCATC 1 cut(s) 255
Sse9I AATT 2 cut(s) 113, 288
StyI CCWWGG 1 cut(s) 340
TaqI TCGA 2 cut(s) 134, 361
TasI AATT 2 cut(s) 113, 288
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 23, 135
TspGWI ACGGA 1 cut(s) 315
Tth111I GACNNNGTC 1 cut(s) 321
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
XmnI GAANNNNTTC 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.