Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8498122 .. 8500607

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAAAGTGTCACTTGATTATGAAGCGACTGATGACATCATTGAAATCAGCTCTCAGAACGATTATGTAAAATCGATGCACGATGATGTTTTGACGATGATGAGCATGATATTGAGGATGAATTTGATGTTTCACATGTTAAGGAAAACATCAATGAAAGGAGAAACTAGTTCTGTACCTGTTGCCATAAATGGATCTAGCAATTCTCAAATGTCTCACCTCCAAAATAAGAAGAGGGATACAAATACTGTGACTAATGAGAATAAGTGGGCCCGAGTTCAGAAAGGCACTAAAGTTATTGTACAAGTTGTAAAAGAGGGGTTGGGTTCAAAAGGTCCCTCACTGACTGCATACCCAAAATTAAAAAGCAGATTCTGGAATAGGAATTTCCAATGTACACGATTAAAAGTCATAGCAAAAACTTTGCAGCCTCTGGGTTTTGGTCTGACGGTAAGAACTGTTGCTGCTGGTCATTCTTTAGAGGAACTGCAAAAGGATTTAGAAGGCCTTGTTTCAACTTGGAAAAACATTACAGAACATGCAAAATCTGCAGCTCTTGCAGCAGATGAAGGTGTGGAAGGGGCCATTCCTGTCATTCTCCATCGGGCAATGGGTCAGATGCTCTCAGTTGTCCAGGATTATTTTAATGAGACGGTTGAGAAAATGGTGGTTGACTCTCCCAGGACATATCATGAGGTGTGGGTTCCACTGGCTAATGTAGGTGTAAGTCGAAGTCTCCCTCTCTTGTGGGTTTGTGGAAGTGCTATTGACATATTTAGGCATGACCATAAGTTCATAACTGGTTTTGTCCTTAGGATGGATAGAAACTTACAGAACTTCATGTTTTTATGGGGAAAAGGAGGCAGGTTAATAAAAATACATAAAAAGATTTTTAACCGTCATCATTTTTATTTTGGGAAGTTATATTTATTCATGAATTCCTCTTTGGCGCTGCCTTATTTCCAGCAAACAAGAGATTGGTCTATGAAGAAGCTAAGAAGGCTGTTGAGAGAGATAGATCGATGGTTAAAGTCTCCTAACTGTCTAGGCATGGACTTATGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 RNase_E_G

Protein Analysis

356

Amino Acids

40.78

Weight (kDa)

9.72

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_E_G	PF10150	133 - 233	3.5e-15	Ribonuclease E/G family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	855
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	3 cut(s)	121, 385, 937
AfaI	GTAC	3 cut(s)	177, 303, 397
AfiI	CCNNNNNNNGG	1 cut(s)	817
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	44, 330, 516
AhlI	ACTAGT	1 cut(s)	167
AjnI	CCWGG	2 cut(s)	633, 680
AjuI	GAANNNNNNNTTGG	2 cut(s)	929, 961
AluBI	AGCT	3 cut(s)	51, 554, 994
AluI	AGCT	3 cut(s)	51, 554, 994
Alw26I	GTCTC	4 cut(s)	219, 644, 740, 1038
AlwI	GGATC	1 cut(s)	202
AlwNI	CAGNNNCTG	2 cut(s)	375, 433
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	3 cut(s)	270, 505, 582
ApaI	GGGCCC	1 cut(s)	274
ApeKI	GCWGC	5 cut(s)	427, 464, 551, 560, 952
ApoI	RAATTY	3 cut(s)	121, 385, 937
AspLEI	GCGC	1 cut(s)	952
AspS9I	GGNCC	4 cut(s)	270, 271, 335, 582
AsuHPI	GGTGA	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	335
AxyI	CCTNAGG	1 cut(s)	812
BaeGI	GKGCMC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	274
BbvI	GCAGC	5 cut(s)	439, 451, 563, 572, 939
BccI	CCATC	3 cut(s)	609, 811, 1017
BciT130I	CCWGG	2 cut(s)	635, 682
BciVI	GTATCC	1 cut(s)	232
BcoDI	GTCTC	4 cut(s)	219, 644, 740, 1038
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	3 cut(s)	168, 198, 1046
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	1 cut(s)	953
BfuAI	ACCTGC	1 cut(s)	855
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	5 cut(s)	428, 465, 552, 561, 953
BlsI	GCNGC	5 cut(s)	429, 466, 553, 562, 954
Bme1390I	CCNGG	2 cut(s)	635, 682
Bme18I	GGWCC	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	4 cut(s)	270, 271, 335, 582
BmiI	GGNNCC	4 cut(s)	272, 337, 583, 705
BmrFI	CCNGG	2 cut(s)	635, 682
BmsI	GCATC	2 cut(s)	66, 609
Bsa29I	ATCGAT	2 cut(s)	74, 1021
BsaJI	CCNNGG	1 cut(s)	680
Bsc4I	CCNNNNNNNGG	1 cut(s)	817
Bse1I	ACTGG	2 cut(s)	714, 805
Bse21I	CCTNAGG	1 cut(s)	812
Bse3DI	GCAATG	1 cut(s)	615
BseBI	CCWGG	2 cut(s)	635, 682
BseCI	ATCGAT	2 cut(s)	74, 1021
BseDI	CCNNGG	1 cut(s)	680
BseGI	GGATG	2 cut(s)	123, 822
BseLI	CCNNNNNNNGG	1 cut(s)	817
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	2 cut(s)	68, 639
BseNI	ACTGG	2 cut(s)	714, 805
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	5 cut(s)	439, 451, 563, 572, 939
BshFI	GGCC	3 cut(s)	272, 507, 584
BshVI	ATCGAT	2 cut(s)	74, 1021
BsiHKCI	CYCGRG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	817
BsmAI	GTCTC	4 cut(s)	219, 644, 740, 1038
BsmBI	CGTCTC	1 cut(s)	644
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	3 cut(s)	272, 507, 584
BsoBI	CYCGRG	1 cut(s)	273
Bsp120I	GGGCCC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp1407I	TGTACA	2 cut(s)	301, 395
Bsp143I	GATC	2 cut(s)	194, 1018
BspANI	GGCC	3 cut(s)	272, 507, 584
BspCNI	CTCAG	2 cut(s)	67, 638
BspDI	ATCGAT	2 cut(s)	74, 1021
BspHI	TCATGA	2 cut(s)	691, 933
BspLI	GGNNCC	4 cut(s)	272, 337, 583, 705
BspMAI	CTGCAG	1 cut(s)	553
BspMI	ACCTGC	1 cut(s)	855
BspPI	GGATC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	615
BsrGI	TGTACA	2 cut(s)	301, 395
BsrI	ACTGG	2 cut(s)	714, 805
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	2 cut(s)	194, 1018
Bst2UI	CCWGG	2 cut(s)	635, 682
Bst4CI	ACNGT	6 cut(s)	250, 451, 460, 655, 899, 1043
Bst6I	CTCTTC	1 cut(s)	227
BstAPI	GCANNNNNTGC	2 cut(s)	548, 557
BstAUI	TGTACA	2 cut(s)	301, 395
BstDEI	CTNAG	4 cut(s)	54, 625, 812, 995
BstF5I	GGATG	2 cut(s)	123, 822
BstH2I	RGCGCY	1 cut(s)	953
BstHHI	GCGC	1 cut(s)	952
BstKTI	GATC	2 cut(s)	197, 1021
BstMAI	GTCTC	4 cut(s)	219, 644, 740, 1038
BstMBI	GATC	2 cut(s)	194, 1018
BstMWI	GCNNNNNNNGC	4 cut(s)	548, 557, 560, 1000
BstNI	CCWGG	2 cut(s)	635, 682
BstNSI	RCATGY	2 cut(s)	139, 542
BstSCI	CCNGG	2 cut(s)	633, 680
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	5 cut(s)	439, 451, 563, 572, 939
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
Bsu15I	ATCGAT	2 cut(s)	74, 1021
Bsu36I	CCTNAGG	1 cut(s)	812
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	3 cut(s)	272, 507, 584
BsuTUI	ATCGAT	2 cut(s)	74, 1021
BtsCI	GGATG	2 cut(s)	123, 822
BtsIMutI	CAGTG	2 cut(s)	341, 707
BveI	ACCTGC	1 cut(s)	855
CaiI	CAGNNNCTG	2 cut(s)	375, 433
CciI	TCATGA	2 cut(s)	691, 933
CfoI	GCGC	1 cut(s)	952
Cfr13I	GGNCC	4 cut(s)	270, 271, 335, 582
ClaI	ATCGAT	2 cut(s)	74, 1021
Csp6I	GTAC	3 cut(s)	176, 302, 396
CviAII	CATG	8 cut(s)	106, 136, 539, 692, 782, 841, 934, 1051
CviJI	RGCY	9 cut(s)	51, 272, 430, 507, 554, 584, 713, 994, 1003
CviKI_1	RGCY	9 cut(s)	51, 272, 430, 507, 554, 584, 713, 994, 1003
CviQI	GTAC	3 cut(s)	176, 302, 396
DdeI	CTNAG	4 cut(s)	54, 625, 812, 995
DpnI	GATC	2 cut(s)	196, 1020
DpnII	GATC	2 cut(s)	194, 1018
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco147I	AGGCCT	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	335
Eco81I	CCTNAGG	1 cut(s)	812
Eco88I	CYCGRG	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	937
EcoRII	CCWGG	2 cut(s)	633, 680
EcoT38I	GRGCYC	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	644
FaeI	CATG	8 cut(s)	109, 139, 542, 695, 785, 844, 937, 1054
FalI	AAGNNNNNCTT	1 cut(s)	29
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	8 cut(s)	105, 135, 538, 691, 781, 840, 933, 1050
Fnu4HI	GCNGC	5 cut(s)	428, 465, 552, 561, 953
FokI	GGATG	2 cut(s)	130, 829
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	5 cut(s)	428, 465, 552, 561, 953
FspBI	CTAG	3 cut(s)	168, 198, 1046
GlaI	GCGC	1 cut(s)	951
GluI	GCNGC	5 cut(s)	428, 465, 552, 561, 953
HaeII	RGCGCY	1 cut(s)	953
HaeIII	GGCC	3 cut(s)	272, 507, 584
HhaI	GCGC	1 cut(s)	952
Hin1II	CATG	8 cut(s)	109, 139, 542, 695, 785, 844, 937, 1054
Hin6I	GCGC	1 cut(s)	950
HinP1I	GCGC	1 cut(s)	950
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HinfI	GANTC	2 cut(s)	372, 674
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	2 cut(s)	398, 673
Hpy188I	TCNGA	4 cut(s)	57, 282, 447, 618
Hpy188III	TCNNGA	3 cut(s)	376, 692, 934
Hpy8I	GTNNAC	2 cut(s)	398, 673
HpyAV	CCTTC	4 cut(s)	497, 563, 572, 993
HpyCH4III	ACNGT	6 cut(s)	250, 451, 460, 655, 899, 1043
HpyCH4V	TGCA	7 cut(s)	79, 350, 427, 490, 542, 551, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	548, 557, 560, 1000
HpyF3I	CTNAG	4 cut(s)	54, 625, 812, 995
Hsp92II	CATG	8 cut(s)	109, 139, 542, 695, 785, 844, 937, 1054
HspAI	GCGC	1 cut(s)	950
Kzo9I	GATC	2 cut(s)	194, 1018
Lsp1109I	GCAGC	5 cut(s)	439, 451, 563, 572, 939
LweI	GCATC	2 cut(s)	66, 609
MaeI	CTAG	3 cut(s)	168, 198, 1046
MaeIII	GTNAC	2 cut(s)	9, 250
MalI	GATC	2 cut(s)	196, 1020
MboI	GATC	2 cut(s)	194, 1018
MboII	GAAGA	2 cut(s)	244, 1000
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	5 cut(s)	121, 202, 359, 385, 937
MlyI	GAGTC	1 cut(s)	668
MseI	TTAA	7 cut(s)	140, 362, 404, 645, 869, 894, 1028
MslI	CAYNNNNRTG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	635, 682
MvaI	CCWGG	2 cut(s)	635, 682
MwoI	GCNNNNNNNGC	4 cut(s)	548, 557, 560, 1000
NdeII	GATC	2 cut(s)	194, 1018
NlaIII	CATG	8 cut(s)	109, 139, 542, 695, 785, 844, 937, 1054
NlaIV	GGNNCC	4 cut(s)	272, 337, 583, 705
NmuCI	GTSAC	2 cut(s)	9, 250
NspI	RCATGY	2 cut(s)	139, 542
PagI	TCATGA	2 cut(s)	691, 933
PceI	AGGCCT	1 cut(s)	507
PciI	ACATGT	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	372
PfoI	TCCNGGA	1 cut(s)	633
PkrI	GCNGC	5 cut(s)	429, 466, 553, 562, 954
PleI	GAGTC	1 cut(s)	668
PpsI	GAGTC	1 cut(s)	668
PpuMI	RGGWCCY	1 cut(s)	335
PscI	ACATGT	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	335
Psp6I	CCWGG	2 cut(s)	633, 680
PspGI	CCWGG	2 cut(s)	633, 680
PspN4I	GGNNCC	4 cut(s)	272, 337, 583, 705
PspOMI	GGGCCC	1 cut(s)	270
PspPI	GGNCC	4 cut(s)	270, 271, 335, 582
PspPPI	RGGWCCY	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	553
PstNI	CAGNNNCTG	2 cut(s)	375, 433
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	3 cut(s)	177, 303, 397
RsaNI	GTAC	3 cut(s)	176, 302, 396
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	7 cut(s)	140, 362, 404, 645, 869, 894, 1028
SatI	GCNGC	5 cut(s)	428, 465, 552, 561, 953
Sau3AI	GATC	2 cut(s)	194, 1018
Sau96I	GGNCC	4 cut(s)	270, 271, 335, 582
SchI	GAGTC	1 cut(s)	668
ScrFI	CCNGG	2 cut(s)	635, 682
SduI	GDGCHC	1 cut(s)	274
SfaNI	GCATC	2 cut(s)	66, 609
SfcI	CTRYAG	1 cut(s)	549
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	84
SpeI	ACTAGT	1 cut(s)	167
Sse9I	AATT	5 cut(s)	121, 202, 359, 385, 937
SseBI	AGGCCT	1 cut(s)	507
SspMI	CTAG	3 cut(s)	168, 198, 1046
StuI	AGGCCT	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	633, 680
TaaI	ACNGT	6 cut(s)	250, 451, 460, 655, 899, 1043
TaqI	TCGA	3 cut(s)	74, 730, 1021
TasI	AATT	5 cut(s)	121, 202, 359, 385, 937
TatI	WGTACW	2 cut(s)	301, 395
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	7 cut(s)	140, 362, 404, 645, 869, 894, 1028
Tru9I	TTAA	7 cut(s)	140, 362, 404, 645, 869, 894, 1028
TscAI	CASTG	2 cut(s)	348, 714
TseFI	GTSAC	2 cut(s)	9, 250
TseI	GCWGC	5 cut(s)	427, 464, 551, 560, 952
Tsp45I	GTSAC	2 cut(s)	9, 250
TspRI	CASTG	2 cut(s)	348, 714
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	3 cut(s)	121, 385, 937
XceI	RCATGY	2 cut(s)	139, 542
XspI	CTAG	3 cut(s)	168, 198, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.