Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9062006 .. 9064803

Gene Structure 2798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGATTCTGATAACCGTTACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACGACAACAATGGTAGGAACAACGATGCAGCTACAATAAAAATCAATTCCCATGCTGAGGTCAGTTATAAATTCTTTAGCTATATATGGTATCAAAGGCATTTTCTTTTGGTAGCAGTGATAATCTTCGGTAACAAGATTTCGGCTCCACAGATGGGATCAACACAACCCAAATCAGTGTTTGAGTTCGAGGATCAGAGCCTAGTTGGGGGTGAGAAACATTCATTGGATGAGGCTCCCCTCAGGGATCTTTATTCTGGTGGTGCAAATGACTGTTGCCCCCATGTCATGAATAGTGTGGTCGATAGCATCAGGATTGTAGTTTTCTCTGCCAAAATTAATTTGCTCATGCCTTTTGGCCCTTTAGCAATCGTTTTTGATAAATTAACCGGCCATCATGTGAGTTTTCACTATCTTTTTCTGCGTGCGAAGGGTTGGGTCTTTCTTTTAAGCTTGTTGGGAATCATACCTTTGGCTGAGCGATTAGGATATGCAACGGAGCAACTGGCTTGCTATACTGGAACAACAGTTGGAGGTCTTTTAAATGCCACCTTTGGAAACGCAACAGAATTGATAATATCAATTTATGCTCTGAAAAGAGGCATGATTCGTGTTGTTCAACAATCCTTACTAGGCTCAATCCTATCGAACATGTTGCTCGTGCTTGGATGTGCATTCTTTGCTGGTGGACTTGTGCATTCACAGAGGGAGCAAGTGTTCAACAAGGCAACTTCTGGAGTGAACTCTGGATTGCTATTGATGGCGGTCATGGGTCTGCTCTTTCCAGCAGTACTGCACTCTACTCGAACAGAGTTGCACTATGGGAAGTCTGAGTTATCTCTTTCGAGATTCACTAGCTGCATTATGCTCATCGCCTATGCTTCATATCTGTTTTTTCAATTAAGAAGCCAGCAGAATTTATATATTCCAGTTGATCAGGGTGCATCTATTGTAATGTGCATCCCGGTTGCGTTTATTAGTGTTATTTTAACTTTAGGAGTGGCAATTGGCTCATCAACCCAGATATCTATGTTTGGAATTCCGTTGTGTGTGGTGGTTGGGTGGTTCATGGGATGCCCTATGGACTTAGATTTCCAACTGTTTGAGACAGCGACACTTTTCATAACTGTTCTGGTGGTAGCCTTCATGTTCACTGCAGCGACTACTTATCCTATACATAACGCGTATGAATGGATTGCATTTGAACTTGCAGGAGGGAACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

430

Amino Acids

47.21

Weight (kDa)

6.4

Isoelectric Point (pI)

31.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	167 - 322	1.9e-23	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	132
AccII	CGCG	1 cut(s)	1247
AciI	CCGC	1 cut(s)	827
AclWI	GGATC	3 cut(s)	229, 264, 318
AcoI	YGGCCR	1 cut(s)	454
AcsI	RAATTY	3 cut(s)	134, 979, 1101
AfaI	GTAC	1 cut(s)	855
AfiI	CCNNNNNNNGG	3 cut(s)	121, 218, 271
AflIII	ACRYGT	2 cut(s)	714, 1245
AgsI	TTSAA	4 cut(s)	683, 784, 962, 1268
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AloI	GAACNNNNNNTCC	2 cut(s)	764, 796
AluBI	AGCT	4 cut(s)	95, 144, 516, 921
AluI	AGCT	4 cut(s)	95, 144, 516, 921
Alw26I	GTCTC	1 cut(s)	1163
AlwI	GGATC	3 cut(s)	229, 264, 318
AoxI	GGCC	2 cut(s)	421, 454
ApeKI	GCWGC	3 cut(s)	92, 921, 1220
ApoI	RAATTY	3 cut(s)	134, 979, 1101
AseI	ATTAAT	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	422
AsuC2I	CCSGG	1 cut(s)	1028
AsuHPI	GGTGA	1 cut(s)	287
AxyI	CCTNAGG	1 cut(s)	305
BauI	CACGAG	1 cut(s)	722
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	104, 908, 1232
BccI	CCATC	3 cut(s)	211, 465, 817
BcgI	CGANNNNNNTGC	4 cut(s)	700, 734, 848, 882
BclI	TGATCA	1 cut(s)	997
BcnI	CCSGG	1 cut(s)	1028
BcoDI	GTCTC	1 cut(s)	1163
BfaI	CTAG	3 cut(s)	266, 695, 918
BfmI	CTRYAG	1 cut(s)	1218
BisI	GCNGC	3 cut(s)	93, 922, 1221
BlpI	GCTNAGC	1 cut(s)	540
BlsI	GCNGC	3 cut(s)	94, 923, 1222
BmcAI	AGTACT	1 cut(s)	855
Bme1390I	CCNGG	1 cut(s)	1028
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	210, 300
BmrFI	CCNGG	1 cut(s)	1028
BmsI	GCATC	5 cut(s)	79, 381, 1016, 1032, 1127
BpmI	CTGGAG	1 cut(s)	819
Bpu10I	CCTNAGC	1 cut(s)	120
Bpu1102I	GCTNAGC	1 cut(s)	540
BpuMI	CCSGG	1 cut(s)	1028
BsaXI	ACNNNNNCTCC	2 cut(s)	764, 794
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 218, 271
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	3 cut(s)	573, 586, 992
Bse21I	CCTNAGG	1 cut(s)	305
BseGI	GGATG	4 cut(s)	298, 737, 1023, 1142
BseLI	CCNNNNNNNGG	3 cut(s)	121, 218, 271
BseMII	CTCAG	4 cut(s)	111, 319, 531, 885
BseNI	ACTGG	3 cut(s)	573, 586, 992
BseXI	GCAGC	3 cut(s)	104, 908, 1232
BsgI	GTGCAG	1 cut(s)	842
Bsh1236I	CGCG	1 cut(s)	1247
BshFI	GGCC	2 cut(s)	423, 456
BsiSI	CCGG	2 cut(s)	453, 1028
BslI	CCNNNNNNNGG	3 cut(s)	121, 218, 271
BsmAI	GTCTC	1 cut(s)	1163
BsmI	GAATGC	2 cut(s)	737, 760
BsnI	GGCC	2 cut(s)	423, 456
Bsp143I	GATC	4 cut(s)	221, 256, 310, 997
Bsp1720I	GCTNAGC	1 cut(s)	540
BspACI	CCGC	1 cut(s)	827
BspANI	GGCC	2 cut(s)	423, 456
BspCNI	CTCAG	4 cut(s)	112, 318, 532, 886
BspFNI	CGCG	1 cut(s)	1247
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	210, 300
BspMAI	CTGCAG	1 cut(s)	1222
BspPI	GGATC	3 cut(s)	229, 264, 318
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	3 cut(s)	573, 586, 992
BssAI	RCCGGY	1 cut(s)	452
BssMI	GATC	4 cut(s)	221, 256, 310, 997
BssSI	CACGAG	1 cut(s)	722
Bst2BI	CACGAG	1 cut(s)	722
Bst4CI	ACNGT	5 cut(s)	17, 338, 592, 1164, 1192
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstC8I	GCNNGC	3 cut(s)	489, 574, 974
BstDEI	CTNAG	5 cut(s)	120, 305, 540, 894, 1150
BstF5I	GGATG	4 cut(s)	298, 737, 1023, 1142
BstFNI	CGCG	1 cut(s)	1247
BstKTI	GATC	4 cut(s)	224, 259, 313, 1000
BstMAI	GTCTC	1 cut(s)	1163
BstMBI	GATC	4 cut(s)	221, 256, 310, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	743
BstNSI	RCATGY	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	1026
BstSFI	CTRYAG	1 cut(s)	1218
BstUI	CGCG	1 cut(s)	1247
BstV1I	GCAGC	3 cut(s)	104, 908, 1232
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
Bsu36I	CCTNAGG	1 cut(s)	305
BsuRI	GGCC	2 cut(s)	423, 456
BtgZI	GCGATG	1 cut(s)	919
BtsCI	GGATG	4 cut(s)	298, 737, 1023, 1142
BtsI	GCAGTG	2 cut(s)	186, 1215
BtsIMutI	CAGTG	3 cut(s)	186, 246, 1215
Cac8I	GCNNGC	3 cut(s)	489, 574, 974
CciI	TCATGA	1 cut(s)	351
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	854
CviQI	GTAC	1 cut(s)	854
DdeI	CTNAG	5 cut(s)	120, 305, 540, 894, 1150
DpnI	GATC	4 cut(s)	223, 258, 312, 999
DpnII	GATC	4 cut(s)	221, 256, 310, 997
DraI	TTTAAA	1 cut(s)	606
EaeI	YGGCCR	1 cut(s)	454
Eco32I	GATATC	1 cut(s)	1089
Eco81I	CCTNAGG	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	1101
EcoRV	GATATC	1 cut(s)	1089
FbaI	TGATCA	1 cut(s)	997
Fnu4HI	GCNGC	3 cut(s)	93, 922, 1221
FokI	GGATG	4 cut(s)	305, 744, 1010, 1149
Fsp4HI	GCNGC	3 cut(s)	93, 922, 1221
FspBI	CTAG	3 cut(s)	266, 695, 918
GluI	GCNGC	3 cut(s)	93, 922, 1221
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	2 cut(s)	423, 456
HapII	CCGG	2 cut(s)	453, 1028
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	4 cut(s)	5, 525, 670, 912
HpaII	CCGG	2 cut(s)	453, 1028
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	3 cut(s)	752, 805, 1215
Hpy188I	TCNGA	4 cut(s)	10, 261, 657, 895
Hpy188III	TCNNGA	5 cut(s)	352, 376, 798, 810, 909
Hpy8I	GTNNAC	3 cut(s)	752, 805, 1215
HpyAV	CCTTC	2 cut(s)	487, 1216
HpyCH4III	ACNGT	5 cut(s)	17, 338, 592, 1164, 1192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	743
HpyF3I	CTNAG	5 cut(s)	120, 305, 540, 894, 1150
Ksp22I	TGATCA	1 cut(s)	997
Kzo9I	GATC	4 cut(s)	221, 256, 310, 997
LmnI	GCTCC	4 cut(s)	214, 304, 562, 772
Lsp1109I	GCAGC	3 cut(s)	104, 908, 1232
LweI	GCATC	5 cut(s)	79, 381, 1016, 1032, 1127
MaeI	CTAG	3 cut(s)	266, 695, 918
MaeIII	GTNAC	2 cut(s)	17, 194
MalI	GATC	4 cut(s)	223, 258, 312, 999
MboI	GATC	4 cut(s)	221, 256, 310, 997
MboII	GAAGA	1 cut(s)	181
MfeI	CAATTG	1 cut(s)	1068
MflI	RGATCY	1 cut(s)	310
MluI	ACGCGT	1 cut(s)	1245
MmeI	TCCRAC	2 cut(s)	574, 1183
MnlI	CCTC	8 cut(s)	115, 247, 289, 314, 590, 656, 762, 1271
MseI	TTAA	6 cut(s)	402, 449, 512, 605, 965, 1052
MspI	CCGG	2 cut(s)	453, 1028
MspR9I	CCNGG	1 cut(s)	1028
MunI	CAATTG	1 cut(s)	1068
Mva1269I	GAATGC	2 cut(s)	737, 760
MvnI	CGCG	1 cut(s)	1247
MwoI	GCNNNNNNNGC	1 cut(s)	743
NciI	CCSGG	1 cut(s)	1028
NdeII	GATC	4 cut(s)	221, 256, 310, 997
NlaIV	GGNNCC	2 cut(s)	210, 300
NspI	RCATGY	1 cut(s)	718
PagI	TCATGA	1 cut(s)	351
PciI	ACATGT	1 cut(s)	714
PctI	GAATGC	2 cut(s)	737, 760
PfeI	GAWTC	4 cut(s)	5, 525, 670, 912
PkrI	GCNGC	3 cut(s)	94, 923, 1222
PscI	ACATGT	1 cut(s)	714
PshBI	ATTAAT	1 cut(s)	402
PsiI	TTATAA	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	210, 300
PspPI	GGNCC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	1222
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	1 cut(s)	855
RsaNI	GTAC	1 cut(s)	854
SaqAI	TTAA	6 cut(s)	402, 449, 512, 605, 965, 1052
SatI	GCNGC	3 cut(s)	93, 922, 1221
Sau3AI	GATC	4 cut(s)	221, 256, 310, 997
Sau96I	GGNCC	1 cut(s)	422
ScaI	AGTACT	1 cut(s)	855
ScrFI	CCNGG	1 cut(s)	1028
SetI	ASST	8 cut(s)	97, 126, 146, 518, 535, 601, 617, 923
SfaNI	GCATC	5 cut(s)	79, 381, 1016, 1032, 1127
SfcI	CTRYAG	1 cut(s)	1218
SsiI	CCGC	1 cut(s)	827
SspMI	CTAG	3 cut(s)	266, 695, 918
StyD4I	CCNGG	1 cut(s)	1026
TaaI	ACNGT	5 cut(s)	17, 338, 592, 1164, 1192
TaqI	TCGA	5 cut(s)	252, 366, 710, 868, 908
TatI	WGTACW	1 cut(s)	853
TfiI	GAWTC	4 cut(s)	5, 525, 670, 912
Tru1I	TTAA	6 cut(s)	402, 449, 512, 605, 965, 1052
Tru9I	TTAA	6 cut(s)	402, 449, 512, 605, 965, 1052
TscAI	CASTG	3 cut(s)	186, 246, 1222
TseI	GCWGC	3 cut(s)	92, 921, 1220
TspDTI	ATGAA	7 cut(s)	276, 368, 936, 1120, 1174, 1198, 1266
TspGWI	ACGGA	2 cut(s)	575, 1095
TspRI	CASTG	3 cut(s)	186, 246, 1222
VspI	ATTAAT	1 cut(s)	402
XapI	RAATTY	3 cut(s)	134, 979, 1101
XceI	RCATGY	1 cut(s)	718
XspI	CTAG	3 cut(s)	266, 695, 918
ZrmI	AGTACT	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.