pycom17g11500

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Reverse (-)
9093872 .. 9095221
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1350 bp
ATGGCGATCTTGATTCCGGGAATGCCCTCAATCAAATGGGCTCTGCTTGTTTTGATTGTATTTGTGCACACCTGTAATGGGTTTTATCTCCCCGGAAGCTACATGCATACATATTCGAAAGGGCAACAAATCATTACCAAAGTTAACTCCTTGACTTCTATAGAGACTGAGCTGCCCTTCAGCTACTACAGTCTCCCTTATTGCAAACCCCCTGAAGGTATCAAGAAAAGCGCCGAGAATCTCGGGGAACTCCTTATGGGAGATGAGATCGAAACCTCTGCGTACCGCTTCAATATGACTGTGAATGAGACTCTTTACCTGTGTACCACATCCGCCTTGACTGAGCACGACGTAAAGCTGCTGAAACAGAGGACCCGTGATCTGTATCAGGTCAATATGATCCTTGATAATTTGCCTGCGATGAGGTATGCTTATCAAAATGGGGTTAAGATTCAGTGGACTGGGTTTCCTGTTGGGTACACACCACCCAACAGTAAAGAAGATTACATCATCAATCACCTCAAGTTCACTGTTTTGATTCACGAGTATGAAGGGAGTGGTGTGCAGGTAATCGGGACTGGGGAAGAAGGCATGGGTGTCATTTCAGAAGCTGATAAGAAGAAGGCATCTGGGTTTGAGATTGTTGGCTTTGAGGTTTCCCCTTGCAGCATTAAATATGACCCAGAGGCCATGAAGAAAAAAGCCATGTATGAAAAAATCCAACCTGTAAATTGCCCCTCAGAGGTCGAAAAGTCTCAAATAATAAGGGAGCAAGAAAAAGTATCATTTACTTATGAGGTTGAGTTTGTGAAAAGCGATATAAGATGGCCATCAAGGTGGGATGCTTATTTGAAGATGGAGGGTGCTCGTGTGCACTGGTTCTCTATCCTGAATTCATTAATGGTGATCCTTTTCCTCGCTGGTATAGTCTTTGTCATATTCCTAAGGACTGTGAGGAGGGATTTAACAAGATACGAAGAACTGGACAAAGAATCTCAAGCTCAAATGAATGAAGAACTCTCTGGGTGGAAGCTTGTTGTGGGAGATGTGTTCAGAGAACCAGATTCTCCCAAGCTTCTTTGTGTGATGGTTGGAGATGGGGTTCAGATTACAGGGATGGCAGTTGTCACAATCATCTTTGCAGCATTTGGTTTCATGTCACCAGCTTCACGAGGAATGCTACTGACCGGAATGATCATTCTATATCTTTTCCTTGGGATTATTGCTGGTTATGTTGCTGTCCGTATGTGGAGAACCATAAAGGGAACTTCCGAAGGGTGGATCGATCGGTTTCCTGGTTTGTGGCGTGCTTCTTTCCTGGAATCGTCTTTGTTATTCTTACAATATTGA

Protein Analysis

450

Amino Acids

51.02

Weight (kDa)

5.99

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 59 - 427 6.9e-102 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 556
AciI CCGC 2 cut(s) 286, 333
AclWI GGATC 3 cut(s) 394, 901, 1289
AcoI YGGCCR 1 cut(s) 827
AcsI RAATTY 1 cut(s) 892
AcuI CTGAAG 2 cut(s) 163, 234
AfaI GTAC 3 cut(s) 284, 325, 479
AfiI CCNNNNNNNGG 4 cut(s) 78, 215, 742, 1278
AgsI TTSAA 2 cut(s) 292, 853
AjnI CCWGG 2 cut(s) 1294, 1317
AloI GAACNNNNNNTCC 2 cut(s) 1086, 1118
AluBI AGCT 9 cut(s) 99, 172, 183, 358, 611, 1001, 1033, 1075, 1166
AluI AGCT 9 cut(s) 99, 172, 183, 358, 611, 1001, 1033, 1075, 1166
Alw21I GWGCWC 4 cut(s) 69, 348, 868, 876
Alw26I GTCTC 4 cut(s) 158, 197, 302, 759
Alw44I GTGCAC 2 cut(s) 65, 872
AlwI GGATC 3 cut(s) 394, 901, 1289
AlwNI CAGNNNCTG 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 2 cut(s) 687, 827
ApaLI GTGCAC 2 cut(s) 65, 872
ApeKI GCWGC 4 cut(s) 172, 358, 666, 1142
ApoI RAATTY 1 cut(s) 892
AseI ATTAAT 1 cut(s) 899
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 372
AsuC2I CCSGG 2 cut(s) 18, 93
AsuHPI GGTGA 3 cut(s) 509, 916, 1152
AsuII TTCGAA 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 372
AxyI CCTNAGG 1 cut(s) 944
BaeGI GKGCMC 2 cut(s) 69, 876
BaeI ACNNNNGTAYC 2 cut(s) 307, 340
BalI TGGCCA 1 cut(s) 829
BanII GRGCYC 1 cut(s) 43
BauI CACGAG 3 cut(s) 542, 867, 1170
Bbv12I GWGCWC 4 cut(s) 69, 348, 868, 876
BbvI GCAGC 4 cut(s) 159, 345, 678, 1154
BccI CCATC 6 cut(s) 819, 838, 850, 1081, 1091, 1111
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 2 cut(s) 1296, 1319
BclI TGATCA 1 cut(s) 1194
BcnI CCSGG 2 cut(s) 18, 93
BcoDI GTCTC 4 cut(s) 158, 197, 302, 759
BfmI CTRYAG 2 cut(s) 159, 187
BfoI RGCGCY 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 556
BisI GCNGC 4 cut(s) 173, 359, 667, 1143
BlsI GCNGC 4 cut(s) 174, 360, 668, 1144
Bme1390I CCNGG 4 cut(s) 18, 93, 1296, 1319
Bme18I GGWCC 1 cut(s) 372
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 374
BmrFI CCNGG 4 cut(s) 18, 93, 1296, 1319
BmrI ACTGGG 2 cut(s) 471, 588
BmsI GCATC 2 cut(s) 635, 832
BmuI ACTGGG 2 cut(s) 471, 588
Bpu14I TTCGAA 1 cut(s) 116
BpuEI CTTGAG 2 cut(s) 506, 981
BpuMI CCSGG 2 cut(s) 18, 93
Bsa29I ATCGAT 1 cut(s) 1284
BsaBI GATNNNNATC 2 cut(s) 384, 829
BsaJI CCNNGG 2 cut(s) 91, 1213
BsaWI WCCGGW 1 cut(s) 1187
BsaXI ACNNNNNCTCC 2 cut(s) 1086, 1116
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 215, 742, 1278
Bse1I ACTGG 4 cut(s) 466, 583, 881, 987
Bse21I CCTNAGG 1 cut(s) 944
Bse8I GATNNNNATC 2 cut(s) 384, 829
BseBI CCWGG 2 cut(s) 1296, 1319
BseCI ATCGAT 1 cut(s) 1284
BseDI CCNNGG 2 cut(s) 91, 1213
BseGI GGATG 3 cut(s) 329, 847, 1122
BseJI GATNNNNATC 2 cut(s) 384, 829
BseLI CCNNNNNNNGG 4 cut(s) 78, 215, 742, 1278
BseMII CTCAG 3 cut(s) 159, 333, 753
BseNI ACTGG 4 cut(s) 466, 583, 881, 987
BseRI GAGGAG 1 cut(s) 970
BseSI GKGCMC 2 cut(s) 69, 876
BseXI GCAGC 4 cut(s) 159, 345, 678, 1154
BsgI GTGCAG 1 cut(s) 584
Bsh1285I CGRYCG 1 cut(s) 1288
BshFI GGCC 2 cut(s) 689, 829
BshVI ATCGAT 1 cut(s) 1284
BsiEI CGRYCG 1 cut(s) 1288
BsiHKAI GWGCWC 4 cut(s) 69, 348, 868, 876
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 3 cut(s) 17, 93, 1188
BslFI GGGAC 1 cut(s) 589
BslI CCNNNNNNNGG 4 cut(s) 78, 215, 742, 1278
BsmAI GTCTC 4 cut(s) 158, 197, 302, 759
BsmFI GGGAC 1 cut(s) 589
BsmI GAATGC 2 cut(s) 27, 1182
BsnI GGCC 2 cut(s) 689, 829
BsoBI CYCGRG 1 cut(s) 242
Bsp119I TTCGAA 1 cut(s) 116
Bsp1286I GDGCHC 5 cut(s) 43, 69, 348, 868, 876
Bsp143I GATC 8 cut(s) 6, 267, 379, 399, 906, 1194, 1281, 1285
BspACI CCGC 2 cut(s) 286, 333
BspANI GGCC 2 cut(s) 689, 829
BspCNI CTCAG 3 cut(s) 160, 334, 752
BspDI ATCGAT 1 cut(s) 1284
BspLI GGNNCC 1 cut(s) 374
BspMI ACCTGC 1 cut(s) 556
BspPI GGATC 3 cut(s) 394, 901, 1289
BspT104I TTCGAA 1 cut(s) 116
BsrI ACTGG 4 cut(s) 466, 583, 881, 987
BssECI CCNNGG 2 cut(s) 91, 1213
BssMI GATC 8 cut(s) 6, 267, 379, 399, 906, 1194, 1281, 1285
BssSI CACGAG 3 cut(s) 542, 867, 1170
BssT1I CCWWGG 1 cut(s) 1213
Bst2BI CACGAG 3 cut(s) 542, 867, 1170
Bst2UI CCWGG 2 cut(s) 1296, 1319
Bst4CI ACNGT 5 cut(s) 191, 301, 494, 532, 952
BstBI TTCGAA 1 cut(s) 116
BstC8I GCNNGC 2 cut(s) 417, 1308
BstDEI CTNAG 4 cut(s) 168, 342, 739, 944
BstF5I GGATG 3 cut(s) 329, 847, 1122
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 8 cut(s) 9, 270, 382, 402, 909, 1197, 1284, 1288
BstMAI GTCTC 4 cut(s) 158, 197, 302, 759
BstMBI GATC 8 cut(s) 6, 267, 379, 399, 906, 1194, 1281, 1285
BstMCI CGRYCG 1 cut(s) 1288
BstNI CCWGG 2 cut(s) 1296, 1319
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 4 cut(s) 16, 91, 1294, 1317
BstSFI CTRYAG 2 cut(s) 159, 187
BstSLI GKGCMC 2 cut(s) 69, 876
BstV1I GCAGC 4 cut(s) 159, 345, 678, 1154
BstXI CCANNNNNNTGG 1 cut(s) 837
Bsu15I ATCGAT 1 cut(s) 1284
Bsu36I CCTNAGG 1 cut(s) 944
BsuRI GGCC 2 cut(s) 689, 829
BsuTUI ATCGAT 1 cut(s) 1284
BtgZI GCGATG 1 cut(s) 434
BtsCI GGATG 3 cut(s) 329, 847, 1122
BtsIMutI CAGTG 3 cut(s) 461, 528, 874
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 2 cut(s) 417, 1308
CaiI CAGNNNCTG 1 cut(s) 611
CfoI GCGC 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 372
ClaI ATCGAT 1 cut(s) 1284
Csp6I GTAC 3 cut(s) 283, 324, 478
CviAII CATG 5 cut(s) 103, 592, 691, 706, 1156
CviQI GTAC 3 cut(s) 283, 324, 478
DdeI CTNAG 4 cut(s) 168, 342, 739, 944
DpnI GATC 8 cut(s) 8, 269, 381, 401, 908, 1196, 1283, 1287
DpnII GATC 8 cut(s) 6, 267, 379, 399, 906, 1194, 1281, 1285
EaeI YGGCCR 1 cut(s) 827
EciI GGCGGA 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 1213
Eco24I GRGCYC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 372
Eco57I CTGAAG 2 cut(s) 163, 234
Eco81I CCTNAGG 1 cut(s) 944
Eco88I CYCGRG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 892
EcoRII CCWGG 2 cut(s) 1294, 1317
EcoT14I CCWWGG 1 cut(s) 1213
EcoT22I ATGCAT 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 1213
FaeI CATG 5 cut(s) 106, 595, 694, 709, 1159
FaqI GGGAC 1 cut(s) 589
FatI CATG 5 cut(s) 102, 591, 690, 705, 1155
FbaI TGATCA 1 cut(s) 1194
Fnu4HI GCNGC 4 cut(s) 173, 359, 667, 1143
FokI GGATG 3 cut(s) 316, 854, 1129
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 4 cut(s) 173, 359, 667, 1143
GlaI GCGC 1 cut(s) 232
GluI GCNGC 4 cut(s) 173, 359, 667, 1143
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 2 cut(s) 689, 829
HapII CCGG 3 cut(s) 17, 93, 1188
HhaI GCGC 1 cut(s) 233
Hin1II CATG 5 cut(s) 106, 595, 694, 709, 1159
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 2 cut(s) 1031, 1073
HinfI GANTC 8 cut(s) 13, 238, 310, 451, 538, 992, 1064, 1322
HpaI GTTAAC 1 cut(s) 145
HpaII CCGG 3 cut(s) 17, 93, 1188
HphI GGTGA 3 cut(s) 509, 916, 1152
Hpy166II GTNNAC 7 cut(s) 67, 145, 324, 459, 480, 528, 874
Hpy188I TCNGA 5 cut(s) 607, 742, 1055, 1107, 1273
Hpy188III TCNNGA 6 cut(s) 10, 223, 542, 574, 889, 1170
Hpy8I GTNNAC 7 cut(s) 67, 145, 324, 459, 480, 528, 874
Hpy99I CGWCG 1 cut(s) 353
HpyAV CCTTC 6 cut(s) 187, 209, 545, 581, 616, 1268
HpyCH4III ACNGT 5 cut(s) 191, 301, 494, 532, 952
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 7 cut(s) 67, 106, 204, 565, 666, 874, 1142
HpyF3I CTNAG 4 cut(s) 168, 342, 739, 944
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 5 cut(s) 106, 595, 694, 709, 1159
HspAI GCGC 1 cut(s) 231
Ksp22I TGATCA 1 cut(s) 1194
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 8 cut(s) 6, 267, 379, 399, 906, 1194, 1281, 1285
LmnI GCTCC 1 cut(s) 769
Lsp1109I GCAGC 4 cut(s) 159, 345, 678, 1154
LweI GCATC 2 cut(s) 635, 832
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 2 cut(s) 1126, 1158
MalI GATC 8 cut(s) 8, 269, 381, 401, 908, 1196, 1283, 1287
MboI GATC 8 cut(s) 6, 267, 379, 399, 906, 1194, 1281, 1285
MboII GAAGA 7 cut(s) 512, 596, 631, 706, 865, 989, 1025
MhlI GDGCHC 5 cut(s) 43, 69, 348, 868, 876
MlsI TGGCCA 1 cut(s) 829
MluCI AATT 3 cut(s) 409, 730, 892
MluNI TGGCCA 1 cut(s) 829
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 2 cut(s) 745, 1072
Mox20I TGGCCA 1 cut(s) 829
Mph1103I ATGCAT 1 cut(s) 108
MscI TGGCCA 1 cut(s) 829
MseI TTAA 5 cut(s) 144, 447, 672, 899, 965
MslI CAYNNNNRTG 2 cut(s) 546, 835
Msp20I TGGCCA 1 cut(s) 829
MspI CCGG 3 cut(s) 17, 93, 1188
MspR9I CCNGG 4 cut(s) 18, 93, 1296, 1319
Mva1269I GAATGC 2 cut(s) 27, 1182
MvaI CCWGG 2 cut(s) 1296, 1319
NciI CCSGG 2 cut(s) 18, 93
NdeII GATC 8 cut(s) 6, 267, 379, 399, 906, 1194, 1281, 1285
NlaIII CATG 5 cut(s) 106, 595, 694, 709, 1159
NlaIV GGNNCC 1 cut(s) 374
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 2 cut(s) 1126, 1158
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 1 cut(s) 106
NspV TTCGAA 1 cut(s) 116
PctI GAATGC 2 cut(s) 27, 1182
PfeI GAWTC 7 cut(s) 13, 238, 451, 538, 992, 1064, 1322
PfoI TCCNGGA 2 cut(s) 16, 1317
PkrI GCNGC 4 cut(s) 174, 360, 668, 1144
Ple19I CGATCG 1 cut(s) 1288
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PpuMI RGGWCCY 1 cut(s) 372
PshBI ATTAAT 1 cut(s) 899
Psp5II RGGWCCY 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 1294, 1317
PspGI CCWGG 2 cut(s) 1294, 1317
PspN4I GGNNCC 1 cut(s) 374
PspPI GGNCC 1 cut(s) 372
PspPPI RGGWCCY 1 cut(s) 372
PstNI CAGNNNCTG 1 cut(s) 611
PvuI CGATCG 1 cut(s) 1288
RsaI GTAC 3 cut(s) 284, 325, 479
RsaNI GTAC 3 cut(s) 283, 324, 478
RseI CAYNNNNRTG 2 cut(s) 546, 835
SaqAI TTAA 5 cut(s) 144, 447, 672, 899, 965
SatI GCNGC 4 cut(s) 173, 359, 667, 1143
Sau3AI GATC 8 cut(s) 6, 267, 379, 399, 906, 1194, 1281, 1285
Sau96I GGNCC 1 cut(s) 372
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 4 cut(s) 18, 93, 1296, 1319
SduI GDGCHC 5 cut(s) 43, 69, 348, 868, 876
SfaNI GCATC 2 cut(s) 635, 832
SfcI CTRYAG 2 cut(s) 159, 187
SfuI TTCGAA 1 cut(s) 116
SinI GGWCC 1 cut(s) 372
SmiMI CAYNNNNRTG 2 cut(s) 546, 835
SmlI CTYRAG 2 cut(s) 521, 996
SmoI CTYRAG 2 cut(s) 521, 996
Sse9I AATT 3 cut(s) 409, 730, 892
SsiI CCGC 2 cut(s) 286, 333
SspI AATATT 1 cut(s) 1346
StyD4I CCNGG 4 cut(s) 16, 91, 1294, 1317
StyI CCWWGG 1 cut(s) 1213
TaaI ACNGT 5 cut(s) 191, 301, 494, 532, 952
TaiI ACGT 1 cut(s) 354
TaqI TCGA 4 cut(s) 116, 270, 747, 1284
TasI AATT 3 cut(s) 409, 730, 892
TfiI GAWTC 7 cut(s) 13, 238, 451, 538, 992, 1064, 1322
Tru1I TTAA 5 cut(s) 144, 447, 672, 899, 965
Tru9I TTAA 5 cut(s) 144, 447, 672, 899, 965
TscAI CASTG 3 cut(s) 461, 535, 881
TseFI GTSAC 2 cut(s) 1126, 1158
TseI GCWGC 4 cut(s) 172, 358, 666, 1142
Tsp45I GTSAC 2 cut(s) 1126, 1158
TspDTI ATGAA 7 cut(s) 564, 707, 726, 885, 1022, 1026, 1144
TspGWI ACGGA 1 cut(s) 1232
TspRI CASTG 3 cut(s) 461, 535, 881
VneI GTGCAC 2 cut(s) 65, 872
VpaK11BI GGWCC 1 cut(s) 372
VspI ATTAAT 1 cut(s) 899
XapI RAATTY 1 cut(s) 892
XceI RCATGY 1 cut(s) 106
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.