pycom17g11840

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Reverse (-)
9646974 .. 9647559
586 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGCTCCGCCTCCAGATTCGTCGAGATGAGAGCCCCAAGACCATCGCCTGCACCACCGTCTCAGAAAAGTGGGCCAAAATCTTTGCGAGATTCAGGCTGCACACGAGCGGATCCATAGGCCAAACCTCCGATCTTGAGGTCACCCTGACCACTGCCGCCCTGGAACCTTCGCGCTTCTGTAACTTTTCAACACAATATAGTTCAAATCCTGTTAATCATGTTCTTGAATTTTACTATGTTTATCGTGTTCTTTGCATTTCATTATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

90

Amino Acids

10.2

Weight (kDa)

8.96

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 108
AccII CGCG 1 cut(s) 172
AciI CCGC 3 cut(s) 7, 108, 156
AclWI GGATC 2 cut(s) 105, 118
AcsI RAATTY 1 cut(s) 227
AgsI TTSAA 3 cut(s) 189, 204, 227
AjnI CCWGG 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 2 cut(s) 105, 118
AoxI GGCC 2 cut(s) 72, 118
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 227
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 133
BamHI GGATCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 35
BauI CACGAG 1 cut(s) 103
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 64
BisI GCNGC 2 cut(s) 98, 156
BlsI GCNGC 2 cut(s) 99, 157
Bme1390I CCNGG 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 2 cut(s) 112, 165
BmrFI CCNGG 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 84
BsgI GTGCAG 2 cut(s) 34, 83
Bsh1236I CGCG 1 cut(s) 172
BshFI GGCC 2 cut(s) 74, 120
BsmAI GTCTC 1 cut(s) 64
BsmBI CGTCTC 1 cut(s) 64
BsnI GGCC 2 cut(s) 74, 120
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 110, 130
BspACI CCGC 3 cut(s) 7, 108, 156
BspANI GGCC 2 cut(s) 74, 120
BspCNI CTCAG 1 cut(s) 74
BspFNI CGCG 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 112, 165
BspPI GGATC 2 cut(s) 105, 118
BsrBI CCGCTC 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 110, 130
BssSI CACGAG 1 cut(s) 103
Bst2BI CACGAG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 61
BstEII GGTNACC 1 cut(s) 139
BstFNI CGCG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 2 cut(s) 113, 133
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 2 cut(s) 110, 130
BstNI CCWGG 1 cut(s) 161
BstPI GGTNACC 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 159
BstUI CGCG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuRI GGCC 2 cut(s) 74, 120
BtgZI GCGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 72
CviAII CATG 1 cut(s) 218
CviJI RGCY 4 cut(s) 33, 74, 97, 120
CviKI_1 RGCY 4 cut(s) 33, 74, 97, 120
DdeI CTNAG 1 cut(s) 61
DpnI GATC 2 cut(s) 112, 132
DpnII GATC 2 cut(s) 110, 130
Eco24I GRGCYC 1 cut(s) 35
Eco91I GGTNACC 1 cut(s) 139
EcoO65I GGTNACC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 35
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 1 cut(s) 221
FaiI YATR 4 cut(s) 116, 198, 219, 237
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 2 cut(s) 98, 156
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 98, 156
GlaI GCGC 1 cut(s) 173
GluI GCNGC 2 cut(s) 98, 156
HaeIII GGCC 2 cut(s) 74, 120
HhaI GCGC 1 cut(s) 174
Hin1II CATG 1 cut(s) 221
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HinfI GANTC 2 cut(s) 16, 90
HphI GGTGA 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 64, 130
Hpy188III TCNNGA 4 cut(s) 13, 23, 134, 224
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 1 cut(s) 177
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 51, 100, 255
HpyF3I CTNAG 1 cut(s) 61
Hsp92II CATG 1 cut(s) 221
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 110, 130
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 7 cut(s) 26, 61, 79, 146, 158, 173, 222
Lsp1109I GCAGC 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 139, 179
MalI GATC 2 cut(s) 112, 132
MbiI CCGCTC 1 cut(s) 108
MboI GATC 2 cut(s) 110, 130
MflI RGATCY 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 1 cut(s) 227
MnlI CCTC 3 cut(s) 20, 130, 136
MseI TTAA 2 cut(s) 213, 268
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
MvnI CGCG 1 cut(s) 172
NdeII GATC 2 cut(s) 110, 130
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 2 cut(s) 112, 165
NmuCI GTSAC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 16, 90
PkrI GCNGC 2 cut(s) 99, 157
Psp6I CCWGG 1 cut(s) 159
PspEI GGTNACC 1 cut(s) 139
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 112, 165
PspPI GGNCC 1 cut(s) 72
PsuI RGATCY 1 cut(s) 110
SaqAI TTAA 2 cut(s) 213, 268
SatI GCNGC 2 cut(s) 98, 156
Sau3AI GATC 2 cut(s) 110, 130
Sau96I GGNCC 1 cut(s) 72
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 35
SetI ASST 3 cut(s) 128, 141, 169
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 227
SsiI CCGC 3 cut(s) 7, 108, 156
StyD4I CCNGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 22
TasI AATT 1 cut(s) 227
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 2 cut(s) 16, 90
Tru1I TTAA 2 cut(s) 213, 268
Tru9I TTAA 2 cut(s) 213, 268
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 249
TspRI CASTG 1 cut(s) 157
XapI RAATTY 1 cut(s) 227
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.