pycom17g12120

Protein FAR1-RELATED SEQUENCE 2 isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
9890237 .. 9890725
489 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 489 bp
ATGGAGATAGATCTTGAACTGCCCTCATGTGAGCAGGACAAGTTAGACGTTAGGGCAGATAAAGATGTTAACATTGTAGATGTCACTGATGAGATAAATGTTGTGGAGGAGCGTGTTAGTTACCCGGTAATGAGTGATCGTGTTAAGGAAGTTGATGGATTGAATGCAGAACAAAGTATTGGGTCGGATAAAGATGTCGACATTGTAGATATTTCCGATGAGGTAAATGTTAAGGAAGTTGATGGGTTGAATGCAGAACAAAGTGTAGGGTTGGATAAAGATGTTGACATTTTAAATGTCGCGGATGAGATAAATGTTGCGGAGGAGCATGTTAGTGCTCCGACAACGAGTGAACATGTTAGGGGAGCTGATGGGTTGAGTGCAGAAGAAAGTGTTAGGTCAGGTAAACATGTTAACGTTGTAGATGTCCCATATGAGATAAATGTTGAGGCGAATGTTAGTTCTCCAACAACGACTGATCGATGTTAA

Protein Analysis

163

Amino Acids

17.62

Weight (kDa)

4.05

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029360)

Species Orthologous Gene IDs
pyrus_communis pycom09g06060 pycom17g12120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AccII CGCG 1 cut(s) 302
AciI CCGC 2 cut(s) 302, 320
AclI AACGTT 1 cut(s) 417
AflIII ACRYGT 2 cut(s) 355, 409
AgsI TTSAA 3 cut(s) 17, 163, 250
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 1 cut(s) 368
AluI AGCT 1 cut(s) 368
Alw21I GWGCWC 1 cut(s) 340
AsuC2I CCSGG 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 340
BccI CCATC 3 cut(s) 149, 236, 365
BcnI CCSGG 1 cut(s) 125
BglII AGATCT 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 481
BseCI ATCGAT 1 cut(s) 481
BseGI GGATG 1 cut(s) 310
BseRI GAGGAG 2 cut(s) 122, 338
BsgI GTGCAG 1 cut(s) 402
Bsh1236I CGCG 1 cut(s) 302
BshVI ATCGAT 1 cut(s) 481
BsiHKAI GWGCWC 1 cut(s) 340
BsiSI CCGG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 413
BsmI GAATGC 2 cut(s) 169, 256
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 3 cut(s) 10, 136, 478
BspACI CCGC 2 cut(s) 302, 320
BspDI ATCGAT 1 cut(s) 481
BspFNI CGCG 1 cut(s) 302
BssMI GATC 3 cut(s) 10, 136, 478
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 302
BstKTI GATC 3 cut(s) 13, 139, 481
BstMBI GATC 3 cut(s) 10, 136, 478
BstNSI RCATGY 3 cut(s) 332, 359, 413
BstSCI CCNGG 1 cut(s) 123
BstUI CGCG 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
Bsu15I ATCGAT 1 cut(s) 481
BsuTUI ATCGAT 1 cut(s) 481
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 84
ClaI ATCGAT 1 cut(s) 481
CviAII CATG 4 cut(s) 27, 329, 356, 410
CviJI RGCY 1 cut(s) 368
CviKI_1 RGCY 1 cut(s) 368
DpnI GATC 3 cut(s) 12, 138, 480
DpnII GATC 3 cut(s) 10, 136, 478
DraI TTTAAA 1 cut(s) 294
FaeI CATG 4 cut(s) 30, 332, 359, 413
FaiI YATR 6 cut(s) 28, 330, 357, 411, 433, 435
FaqI GGGAC 1 cut(s) 413
FatI CATG 4 cut(s) 26, 328, 355, 409
FauNDI CATATG 1 cut(s) 433
FblI GTMKAC 1 cut(s) 198
FokI GGATG 1 cut(s) 317
HapII CCGG 1 cut(s) 125
Hin1II CATG 4 cut(s) 30, 332, 359, 413
HincII GTYRAC 4 cut(s) 70, 199, 286, 415
HindII GTYRAC 4 cut(s) 70, 199, 286, 415
HpaI GTTAAC 2 cut(s) 70, 415
HpaII CCGG 1 cut(s) 125
Hpy166II GTNNAC 6 cut(s) 70, 199, 286, 353, 407, 415
Hpy188I TCNGA 3 cut(s) 187, 217, 342
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 6 cut(s) 70, 199, 286, 353, 407, 415
HpyCH4IV ACGT 2 cut(s) 48, 417
HpyCH4V TGCA 3 cut(s) 167, 254, 383
HpySE526I ACGT 2 cut(s) 48, 417
Hsp92II CATG 4 cut(s) 30, 332, 359, 413
KspAI GTTAAC 2 cut(s) 70, 415
Kzo9I GATC 3 cut(s) 10, 136, 478
LmnI GCTCC 4 cut(s) 109, 325, 343, 365
LpnPI CCDG 3 cut(s) 20, 138, 387
MaeII ACGT 2 cut(s) 48, 417
MaeIII GTNAC 2 cut(s) 82, 119
MalI GATC 3 cut(s) 12, 138, 480
MboI GATC 3 cut(s) 10, 136, 478
MboII GAAGA 1 cut(s) 398
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 340
MmeI TCCRAC 3 cut(s) 165, 252, 365
MnlI CCTC 5 cut(s) 34, 100, 214, 316, 442
MseI TTAA 6 cut(s) 69, 144, 231, 293, 414, 487
MslI CAYNNNNRTG 1 cut(s) 333
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 125
Mva1269I GAATGC 2 cut(s) 169, 256
MvnI CGCG 1 cut(s) 302
NciI CCSGG 1 cut(s) 125
NdeI CATATG 1 cut(s) 433
NdeII GATC 3 cut(s) 10, 136, 478
NlaIII CATG 4 cut(s) 30, 332, 359, 413
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 3 cut(s) 332, 359, 413
PciI ACATGT 2 cut(s) 355, 409
PctI GAATGC 2 cut(s) 169, 256
PscI ACATGT 2 cut(s) 355, 409
Psp1406I AACGTT 1 cut(s) 417
PsuI RGATCY 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 333
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 6 cut(s) 69, 144, 231, 293, 414, 487
Sau3AI GATC 3 cut(s) 10, 136, 478
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 340
SetI ASST 6 cut(s) 51, 225, 370, 401, 406, 420
SmiMI CAYNNNNRTG 1 cut(s) 333
SsiI CCGC 2 cut(s) 302, 320
StyD4I CCNGG 1 cut(s) 123
TaiI ACGT 2 cut(s) 51, 420
TaqI TCGA 2 cut(s) 198, 481
Tru1I TTAA 6 cut(s) 69, 144, 231, 293, 414, 487
Tru9I TTAA 6 cut(s) 69, 144, 231, 293, 414, 487
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspRI CASTG 1 cut(s) 91
XceI RCATGY 3 cut(s) 332, 359, 413
XmiI GTMKAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.