pycom17g12260

36.4 kDa proline-rich

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
9976296 .. 9976788
493 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 384 bp
ATGCAAACTACCCCCAAGCCCCCAACTGTAAAACCACCACCACCATCTCCACCAAAGGACACGTGTCCCATCGACACCCTTAAATTGGGAGCTTGTGTAGATGTGTTGGGTGGTCTTATCCACGTTGGAATTGGAAGCAGTGCCAAAGATACATGTTGTCCGGTGCTTCAGGGACTGGTGGACTTGGATGCTGCTATTTGCCTTTGTGCTCATTGCTTGTGGGAAGACTCCTCCCTCCGGATTCCAGTGTCCTGCATAGATGATCGATCATATCTTATTCCTAGATCTCACTTAGTAGTTGTTAATCATGTCATCATTAGGGATATGTGGCGCCAGCTAGCTGATAATAAAGCATGTCAAAGCTTGAAAGTAAAAACTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

128

Amino Acids

13.72

Weight (kDa)

7.54

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 21 - 72 8.1e-16 Hydrophobic seed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 330
AccIII TCCGGA 1 cut(s) 237
AcuI CTGAAG 1 cut(s) 152
AcvI CACGTG 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 331
AfiI CCNNNNNNNGG 2 cut(s) 85, 237
AflIII ACRYGT 3 cut(s) 60, 62, 152
AgsI TTSAA 1 cut(s) 367
AluBI AGCT 4 cut(s) 92, 337, 341, 363
AluI AGCT 4 cut(s) 92, 337, 341, 363
Alw21I GWGCWC 1 cut(s) 211
AlwNI CAGNNNCTG 1 cut(s) 175
Aor13HI TCCGGA 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 333
AsuNHI GCTAGC 1 cut(s) 337
BanI GGYRCC 1 cut(s) 330
BbrPI CACGTG 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 178
BccI CCATC 2 cut(s) 52, 77
BfaI CTAG 2 cut(s) 282, 338
BfoI RGCGCY 1 cut(s) 334
BglII AGATCT 1 cut(s) 284
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 332
BmsI GCATC 1 cut(s) 178
BmtI GCTAGC 1 cut(s) 341
BoxI GACNNNNGTC 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 231
Bsa29I ATCGAT 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 331
BsaWI WCCGGW 2 cut(s) 160, 237
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 237
Bse1I ACTGG 2 cut(s) 180, 245
Bse3DI GCAATG 1 cut(s) 211
BseAI TCCGGA 1 cut(s) 237
BseCI ATCGAT 1 cut(s) 265
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 2 cut(s) 85, 237
BseMI GCAATG 1 cut(s) 211
BseNI ACTGG 2 cut(s) 180, 245
BseRI GAGGAG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 330
BshVI ATCGAT 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 211
BsiSI CCGG 2 cut(s) 161, 238
BslFI GGGAC 2 cut(s) 51, 186
BslI CCNNNNNNNGG 2 cut(s) 85, 237
BsmFI GGGAC 2 cut(s) 51, 186
Bsp1286I GDGCHC 1 cut(s) 211
Bsp13I TCCGGA 1 cut(s) 237
Bsp143I GATC 3 cut(s) 262, 266, 284
BspDI ATCGAT 1 cut(s) 265
BspEI TCCGGA 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 332
BspOI GCTAGC 1 cut(s) 341
BspT107I GGYRCC 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 211
BsrI ACTGG 2 cut(s) 180, 245
BssMI GATC 3 cut(s) 262, 266, 284
BssNI GRCGYC 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 331
BstBAI YACGTR 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 335, 339
BstDEI CTNAG 1 cut(s) 292
BstF5I GGATG 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 3 cut(s) 265, 269, 287
BstMBI GATC 3 cut(s) 262, 266, 284
BstNSI RCATGY 2 cut(s) 156, 357
BstPAI GACNNNNGTC 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 265
BsuTUI ATCGAT 1 cut(s) 265
BtsCI GGATG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 145, 252
Cac8I GCNNGC 2 cut(s) 335, 339
CaiI CAGNNNCTG 1 cut(s) 175
CfoI GCGC 1 cut(s) 333
ClaI ATCGAT 1 cut(s) 265
CviAII CATG 3 cut(s) 153, 308, 354
CviJI RGCY 5 cut(s) 19, 92, 337, 341, 363
CviKI_1 RGCY 5 cut(s) 19, 92, 337, 341, 363
DdeI CTNAG 1 cut(s) 292
DinI GGCGCC 1 cut(s) 332
DpnI GATC 3 cut(s) 264, 268, 286
DpnII GATC 3 cut(s) 262, 266, 284
Eco57I CTGAAG 1 cut(s) 152
Eco72I CACGTG 1 cut(s) 63
EgeI GGCGCC 1 cut(s) 332
EheI GGCGCC 1 cut(s) 332
FaeI CATG 3 cut(s) 156, 311, 357
FaiI YATR 6 cut(s) 154, 257, 271, 309, 326, 355
FaqI GGGAC 2 cut(s) 51, 186
FatI CATG 3 cut(s) 152, 307, 353
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 2 cut(s) 282, 338
GlaI GCGC 1 cut(s) 332
GluI GCNGC 1 cut(s) 192
HaeII RGCGCY 1 cut(s) 334
HapII CCGG 2 cut(s) 161, 238
HhaI GCGC 1 cut(s) 333
Hin1I GRCGYC 1 cut(s) 331
Hin1II CATG 3 cut(s) 156, 311, 357
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HindIII AAGCTT 1 cut(s) 361
HinfI GANTC 2 cut(s) 227, 241
HpaII CCGG 2 cut(s) 161, 238
Hpy166II GTNNAC 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 2 cut(s) 62, 123
HpyCH4V TGCA 2 cut(s) 4, 255
HpyF3I CTNAG 1 cut(s) 292
HpySE526I ACGT 2 cut(s) 62, 123
Hsp92I GRCGYC 1 cut(s) 331
Hsp92II CATG 3 cut(s) 156, 311, 357
HspAI GCGC 1 cut(s) 331
KasI GGCGCC 1 cut(s) 330
Kpn2I TCCGGA 1 cut(s) 237
Kzo9I GATC 3 cut(s) 262, 266, 284
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 7 cut(s) 155, 161, 174, 251, 258, 265, 347
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 178
MaeI CTAG 2 cut(s) 282, 338
MaeII ACGT 2 cut(s) 62, 123
MalI GATC 3 cut(s) 264, 268, 286
MboI GATC 3 cut(s) 262, 266, 284
MboII GAAGA 1 cut(s) 236
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 2 cut(s) 83, 129
Mly113I GGCGCC 1 cut(s) 331
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 2 cut(s) 241, 245
MroI TCCGGA 1 cut(s) 237
MseI TTAA 2 cut(s) 81, 303
MspI CCGG 2 cut(s) 161, 238
NarI GGCGCC 1 cut(s) 331
NdeII GATC 3 cut(s) 262, 266, 284
NheI GCTAGC 1 cut(s) 337
NlaIII CATG 3 cut(s) 156, 311, 357
NlaIV GGNNCC 1 cut(s) 332
NspI RCATGY 2 cut(s) 156, 357
PciI ACATGT 1 cut(s) 152
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 221
PluTI GGCGCC 1 cut(s) 334
PmaCI CACGTG 1 cut(s) 63
PmlI CACGTG 1 cut(s) 63
PpsI GAGTC 1 cut(s) 221
Ppu21I YACGTR 1 cut(s) 63
PscI ACATGT 1 cut(s) 152
PshAI GACNNNNGTC 1 cut(s) 63
PspCI CACGTG 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 332
PstNI CAGNNNCTG 1 cut(s) 175
PsuI RGATCY 1 cut(s) 284
SaqAI TTAA 2 cut(s) 81, 303
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 3 cut(s) 262, 266, 284
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 1 cut(s) 211
SetI ASST 6 cut(s) 65, 94, 126, 339, 343, 365
SfaNI GCATC 1 cut(s) 178
SfoI GGCGCC 1 cut(s) 332
Sse9I AATT 2 cut(s) 83, 129
SspDI GGCGCC 1 cut(s) 330
SspMI CTAG 2 cut(s) 282, 338
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 2 cut(s) 65, 126
TaqI TCGA 2 cut(s) 72, 265
TasI AATT 2 cut(s) 83, 129
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 2 cut(s) 81, 303
Tru9I TTAA 2 cut(s) 81, 303
TscAI CASTG 2 cut(s) 145, 252
TseI GCWGC 1 cut(s) 191
TspRI CASTG 2 cut(s) 145, 252
XceI RCATGY 2 cut(s) 156, 357
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XspI CTAG 2 cut(s) 282, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.