pycom17g12300

Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Reverse (-)
10003910 .. 10004332
423 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 264 bp
ATGAGGAAAAATAGTGCAGACAGATTGGGATCTGAGCTGTACGGTGATTTTCTACCCAGTGCAGATGAGTGCCCCAGCCTGCTTCTAGCTAGTGAGGAGGAGCTTTCAGAACTGCAAGATCCCAATCTTGCTTCAACTATGAGGGAACAGCAATGCCGAGCCCTGGAATTTTGGGAAAAAAAACTGGGTATTAATCAGCCTGTATATCTTGTTATCATTATGCGGAAATTTTTTATTTTTTATTTTGATTACCATATGTTTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

10.28

Weight (kDa)

4.72

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 223
AclWI GGATC 2 cut(s) 37, 113
AcsI RAATTY 2 cut(s) 167, 227
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 1 cut(s) 135
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 3 cut(s) 37, 89, 103
AluI AGCT 3 cut(s) 37, 89, 103
AlwI GGATC 2 cut(s) 37, 113
ApoI RAATTY 2 cut(s) 167, 227
AseI ATTAAT 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 164
BfaI CTAG 2 cut(s) 86, 90
Bme1390I CCNGG 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 164
BmrI ACTGGG 2 cut(s) 51, 194
BmuI ACTGGG 2 cut(s) 51, 194
BsaBI GATNNNNATC 2 cut(s) 28, 123
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 57, 189
Bse3DI GCAATG 1 cut(s) 158
Bse8I GATNNNNATC 2 cut(s) 28, 123
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 162
BseJI GATNNNNATC 2 cut(s) 28, 123
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMI GCAATG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 2 cut(s) 57, 189
BseRI GAGGAG 2 cut(s) 110, 113
BseSI GKGCMC 1 cut(s) 74
BseYI CCCAGC 1 cut(s) 74
BsgI GTGCAG 2 cut(s) 36, 81
BslI CCNNNNNNNGG 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 74, 163
Bsp143I GATC 2 cut(s) 29, 118
BspACI CCGC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 25
BspPI GGATC 2 cut(s) 37, 113
BsrDI GCAATG 1 cut(s) 158
BsrI ACTGG 2 cut(s) 57, 189
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 2 cut(s) 29, 118
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 33
BstKTI GATC 2 cut(s) 32, 121
BstMBI GATC 2 cut(s) 29, 118
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 74
BstX2I RGATCY 2 cut(s) 29, 118
BstYI RGATCY 2 cut(s) 29, 118
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 40
CviJI RGCY 6 cut(s) 37, 78, 89, 103, 161, 199
CviKI_1 RGCY 6 cut(s) 37, 78, 89, 103, 161, 199
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 33
DpnI GATC 2 cut(s) 31, 120
DpnII GATC 2 cut(s) 29, 118
Eco24I GRGCYC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 163
FaiI YATR 5 cut(s) 140, 205, 221, 255, 257
FauNDI CATATG 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 163
FspBI CTAG 2 cut(s) 86, 90
GsaI CCCAGC 1 cut(s) 78
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 2 cut(s) 34, 109
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 3 cut(s) 17, 62, 115
HpyF3I CTNAG 1 cut(s) 33
Kzo9I GATC 2 cut(s) 29, 118
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 7 cut(s) 70, 88, 92, 149, 170, 176, 213
MaeI CTAG 2 cut(s) 86, 90
MalI GATC 2 cut(s) 31, 120
MboI GATC 2 cut(s) 29, 118
MflI RGATCY 2 cut(s) 29, 118
MhlI GDGCHC 2 cut(s) 74, 163
MluCI AATT 2 cut(s) 167, 227
MnlI CCTC 3 cut(s) 88, 91, 135
MseI TTAA 2 cut(s) 192, 262
MspR9I CCNGG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 164
NdeI CATATG 1 cut(s) 255
NdeII GATC 2 cut(s) 29, 118
NmeAIII GCCGAG 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 162
PsuI RGATCY 2 cut(s) 29, 118
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SaqAI TTAA 2 cut(s) 192, 262
Sau3AI GATC 2 cut(s) 29, 118
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 2 cut(s) 74, 163
SetI ASST 3 cut(s) 39, 91, 105
Sse9I AATT 2 cut(s) 167, 227
SsiI CCGC 1 cut(s) 223
SspMI CTAG 2 cut(s) 86, 90
StyD4I CCNGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 44
TasI AATT 2 cut(s) 167, 227
Tru1I TTAA 2 cut(s) 192, 262
Tru9I TTAA 2 cut(s) 192, 262
TscAI CASTG 1 cut(s) 64
TspRI CASTG 1 cut(s) 64
VspI ATTAAT 1 cut(s) 192
XapI RAATTY 2 cut(s) 167, 227
XspI CTAG 2 cut(s) 86, 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.