pycom17g13110

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
10786590 .. 10794025
7436 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 5379 bp
ATGGGTTTTACGGGAGAAGACGATAGCTGTTTGGATGAAGACGAATCGGGGTTTGGTATGAAGACGAATCTAGGTATAACTAAAATTAAAATAAATTATCATATTATATTTAATATCATAAAAGTTTACCAAACACTTAATTGCTTTATCTTACAGCTGTTTATTTTCACAGTACAGCAGAAGGAGTTTTTTTTTTTAAAACACAACAATACCAAACTAAGAAACAAAAGGATCTGTGGTACTAATGATGGATCCCCAAATCCAACACCTAATACCGATATTAAATTAAATATTTTTTTAATTTTACGTTTTATGATTGGGGTTCGGTTTCGAACACAAACCGTTTCAAAACCACGAAAATCAAATAGTTCGATGCAGTCAGGTTTGGTCCGTATTTCGGTTCGGTTCCAAGTGCCCATCTCTTACGATATATGTGAGGAATCCCAAATCAAAACCCTTATTACATTTCCATCCCAAATTGAGACCCTAATTCTATTTAAGAATTCCCAAATCACAACCCTAATCTCCATTTCAGAATCCCAAATTGAAACCCTAATCAAATTTGAAGAATTAGGGCGAAATTTTTTACTTTCTGTATTGATTTGTGTTTATTTTGTGTTGATTTGTGAAAAGTTTACAGTAAATTTAACCTCTCTATCCAAGAAACTCAAGAGGTCAATACTCTCATTGAAGATGGAACATATGTCCAACCATCTGGAATTGAAGACGTCTCCCACCACAAAGAGCAATGAGCAATTCAGTTGGCTAAAGCTCAAAGCGTATAATATCCAAAATGTTATAAATATTAAAGTGGGTGCAAAATATCATTCTAAGAATGGAGGGATACTTATATTATTGCTTTCACTACTTTTTTTTTTTTGCCACATCCTTGACAAACTAAAAAGTGAAATAATTGCCCATTTGCAAACATCACACAACAACAGTTACACTACTATTCTCAAGTCTTCCTCACTTAAAGTATATTTTCTTTCTGTTTTTGGAAGTAAACTAGTGGAGCATATCAAGCCCACAGGAAATCATCAAATCTCCAATGGAACAAAATCGATCGTGAAAATCCTTGGAACATCAAGCACCGCATGCACCAAAATAGTATATATTCCCACCTACGTCTCTGACCAAACAACAACAACAACATTGTTCAGACTAACTAAGAGTAATATACTCAGTAGTCATACACTATATTTCATCTTTTCTGAAATGGCTTCTTCAACAATGGCTCTCTCCTCTCCTTCTCTTGCTGGCCAAGCTGTCAAGCTTAATCCTTCTTCATCTAACCTTCGTGGAATTGGGATCCAACCTAACCCTACCATCTCCACATTTGAGTGGACCATTATTTATTTAATAAATAATATACAATGTGTAAAGACCTGTAGAGAAAAAGGGTATCAAACAGAGACCTTAATTGTACAACTCATGCCAACATCCCCTCTCAAATTGGTTGAATGCATATATATTTTCTATGCCCAACTTGCCAATTGGGTTGTAAAATATACTTTACAAACGAATGTAAATTGTATGAGTTATGCAACTGAAAATAAAAATGCAAACACATGTTACCATCACAGATATAGTTATGTAAAGAGAAAAAAGAAAAGTCTGCAAAATGCTAAAACTTTCCAGGTGTGGCACTACGGCTTCAATTTTCAGTTTCAGCAGTTAAATTGTAGGAATTTTAACGAAAAGTTTTCGCCTGATACTATTCACTTACCCTTTATTTTACTCTTATCATTAAAACTCAAAGTTTTCAAAAAAATTCCATTAGTTTTCCTTTCAATTTTCCTTTTACCATTAAGAAAAAATTGCAAATCTCCATCCTTAGTGCTAGATTGGATCCAAAAGAACAATCCTGATTCCTTACTCTTCCTCTCATTATCCAGAAAAATCTTCAAATGTCATTACTCTCATCCAAAGTGTATGTATGTGGCCAAATTTTATTGGCTAGATGTCTCTGACCACAAAGACATCCAAAAACAACTTTTCCTTCTTTCTGTTTTTGGAACTAAAAGTAGCGGAGCATATCAAGCCAACTGGAAATTATCAAAGAAGATATCACAATTCACAAAGATAAGGACTCCATTGCCCACACCAAACCCTATAAATATACCTACCAACGTCTTTAGCTACCAGAACAACAACAAGAAGAAGAAGAAGCACTCGAGTTTCCCTTGTCCGAGAGCTAAAACTCAATACACTTTCATTTTTCTGAAATGGCTTCTTCAACAATGGCACTCTCCTCTCCTTCTCTTTCTGGCCAAGCTGTCAATCACCATGCGCAAAACCGCAGCAAAGTCCAAGAAAGTGTCATCTGGCAGCCCGTGGTATGGGCCAGACCGTGCTAAATACTTGGGACCATTCTCTGGGGAGTCTCCTTCTTACCTAACCGGAGAATTCCCTGGCGATTACGGTTGGGACACTGCTGGACTTTCAGCCGACCCAGAAACCTTTGCCAAGAACCGGGAGCTCGAAGTCATTCACTCAAGATGGGCAATGCTTGGCGCTCTGGGCTGCATTTTCCCAGAACTTCTATCCCGCAACGGAGTCAAGTTCGGTGAGGCTGCTTGGTTCAAGGCGGGAGCCCAAATATTCAGTCAAGGTGGACTAGACTACTTGGGAAACCCAAGCTTAGTCCATGCCCAAACAGTGGAGGGCTACAGGGTTGCCGGCGGACCTCTCAGTGAGATAACCGACCCGTTGTACCCTGGCGGGAGCTTTGACCCATTAGGGCTTGCAGAGGATCCAGAAGCTTTTGCTGAGCTTAAGGTGAAGGAGCTCAAGAATGGAAGATTGGCCATGTTTTCTATGTTTGGATTTTTTGTACAAGCCATTGTTACTGGAAAAGGTCCAATAGAAAACCTAGCTGACCACTTGGCTGACCCCGTTAACAACAACGCTTGGTCATATGCCACCAACTTTAGAAGCACTTCTACTAATTGCTTTTACTTGTTAATTGTTTTGGCAAATCAACGGGAAGGAATATATCAACAATTGGTTTCAGTAAAAATTTGCATTGCCCTTGAATATTTCATCGCACTAATTAATAATTTTATACAAACACTGAATTTTTCTTGGTCAGACAACTTATTGAATCAGCATCATGCCTTCAAAGAAACGGAAAAGCCTCATTTGGTATCTTTATTAACAACCTATTCAGCCAGAATCTTCTCATGGAAAATAAAGAATCAATTCATCGAGGAATTCAAAATTTCCGATATTGGTTGCCTCTTATATGTAATTTCCTGTCAGGCCAGATATAATTTTATATGTTCTAATGAAATATTATCAAAGATATTGATGCATGATTTACAGCAGTTCCTTAGTGCCCACCATGGCAAGGAAACAGACATTAGTGCAAAAGGTTCACTCATTCCAAAATGCTATAAATCGATGGATAATCCGTTAAAATTGAAGAACTTTGTAACATGTATTCTTATTTCTTTAGAGACCATATTTAATAGACCATATGATGTGGTGGGAGATGTTATAAATTTAGTTCAAAAAATTGTTCTGTTTATGTGTAAAGACTTGTCAAGAAGAAAAGAAACAAAGACTTTAATTACACAATTCATGCCAACATTGCCTCTCAAGTTTGTTGCATGCATACATATCCTCAATGCGCCAACTTGCCAATCGAGTTGTAATGTCAAAATAACTGGCATTCTCTTTAATACAATGTCTATTCACTTCAGCATGATTCGTACGACCATATTGAATTGGATTATAAGCAATATAGATAACAACCTTTCTATCACAATGCAAGCCTCCACCACATCCGGAGCTCGACTCCACCGTAACACGATATTGTCCGCTTTGGACCCCAATCACGCCCTCACGGTTTTGTTTTTGGGAACTCACATGAGATCTTCTCAGTGGGTCACCAATCCTGGGATTGTTCTCGCGCGAACTCGCTTAACTTCGGAGTTCCGATGGAATCCGAAGCCAATGAGCTCCCAAAAGGATCCACTTCCCTGGACGATGTGGGATCTAACATTTAATCCCAAGTTTCAGTCAACAGTTTCTATAGTAAGAGGATCATTAGCATCTTGTCATTTCTTGATTGCATGTAAAGAGAAAAAAGAAAAGTGTGCAAAATGCTACAAATTTCTGGGTGTGGCACTGTGTTCAGTCTCTACCATTCATTTTTTGCGCCACTTACCACTAAAGAAAAATTGCAAATTTCCATCCTTGGATAAAAATAAAAATAAAAAAAAAAAAAAATCATCCTTATTCTTAAATTCTTCCTCTCATTATCCAAAAAAATCTTCAGGTGTCATTACTCTCATCCAAAGTGTATGTATTATTGAGCAAATTCAATTGGCTACAATTGAAGGCACAGGTAATATCCAAAATAGCTTTTCCTTCTCTTTCTGTGTTTGGAACTTAAAGTACGTAGTGGAGCATATCAAGCCAACTGGAAATTATCAAATTACACCAATGAGAAATCAGATGAAGATATCACATTTCACAAAGATAAAGACTCCATTGCCCCACCAAACCCTATACATATACCTAGCCACCAACGTCTCTAGCTACCAGAACAACAACAACAACAACAAGCACTCGGCTTTCCCTCATTGTCCGAGAGCTAAAACTCAATACACTTCATTTAATTTTCTCAAATGGCTTCTTCCGCAATGGGCCGAATTACCATGTGCAAAACCGCAGCCAAGTCCAAAAATGTATCATCTGGCAGCCCATGGTATGGTCCAGACCGTGTCCAGTACTTGGGTCCTTTCTCTGGTGAGTCCCCATCTTACATCACCGGAGAATTCCCTGGTGATTACGGTTGGGACACTGCCGGACTCTCAGCCTGAGGCATTTGCTAAGAACCGTGAGCTTGAAGTCATCCATTCTAGATGGGCAGTGCTCGGGGCTCTGGGCTGCATTTTCCCAGAACTCCTATCTCGCAACGGAGTCAAGTTCGGCGAGGCTGTTTGGTTCAAGGCGGGAGCCCAGATTTTCAGTCAAGGCGGGCTATACTACTTGGGGAACCCAAGCTTAGTCCATGCTCAAAGCATTTTGGCAATTTGGGCCACACAAGTTATCTTGATGGGTGCAGTGGAGGGATACAGAATTGCCGGTGGACCTGCCATAGTTACTGGAAAAGGACCAATAGAGAACTTGGCCGACCACTTGTCTGACCCTGTGAACAACAATGCTTGGTCATATACCACAAACTTTTTTGCAGGTCATTGTTCTTGTGAAATGGGGTTTCAGTTAATATGCTTATTTTGGAGTAAAAGTTTGCATGTGAAATTTGCCTCTTTACCTATAAACCTCTATTTGGTTACAATATTTTACTTGAATCAGAATTGTTGTGCACTGCAAGAAATGGTAAATATGTTAAGGCCAGTTACATAA

Protein Analysis

1793

Amino Acids

202.92

Weight (kDa)

9.52

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 797 - 949 5.1e-45 Chlorophyll A-B binding protein
Chloroa_b-bind PF00504 1609 - 1706 2.5e-14 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 800, 3503, 3740
AatII GACGTC 1 cut(s) 731
Acc16I TGCGCA 1 cut(s) 2294
Acc36I ACCTGC 2 cut(s) 5113, 5195
AccB7I CCANNNNNTGG 4 cut(s) 2378, 2662, 4720, 4743
AccII CGCG 2 cut(s) 3917, 3919
AccIII TCCGGA 1 cut(s) 3791
AcoI YGGCCR 5 cut(s) 1261, 1944, 2271, 2808, 5142
AcuI CTGAAG 2 cut(s) 3688, 4266
AcyI GRCGYC 1 cut(s) 728
AfaI GTAC 8 cut(s) 174, 241, 1428, 2717, 2838, 3718, 4406, 4741
AflII CTTAAG 1 cut(s) 2777
AflIII ACRYGT 2 cut(s) 1571, 3440
AhdI GACNNNNNGTC 1 cut(s) 5152
AhlI ACTAGT 1 cut(s) 1009
AjnI CCWGG 6 cut(s) 1638, 2413, 2719, 3901, 3986, 4791
AjuI GAANNNNNNNTTGG 6 cut(s) 36, 68, 2789, 2821, 4264, 4296
Alw21I GWGCWC 6 cut(s) 2484, 2793, 3799, 3968, 4887, 5341
Alw26I GTCTC 9 cut(s) 476, 735, 1135, 1409, 1972, 2391, 3455, 4150, 4546
Alw44I GTGCAC 1 cut(s) 5337
Ama87I CYCGRG 2 cut(s) 2176, 4886
Aor13HI TCCGGA 1 cut(s) 3791
ApaLI GTGCAC 1 cut(s) 5337
ApeKI GCWGC 7 cut(s) 2303, 2331, 2526, 2576, 4681, 4709, 4899
ArsI GACNNNNNNTTYG 2 cut(s) 2593, 2625
AseI ATTAAT 1 cut(s) 3057
Asp700I GAANNNNTTC 3 cut(s) 2490, 2941, 3203
AspLEI GCGC 5 cut(s) 2295, 2519, 3637, 3919, 4167
AsuC2I CCSGG 1 cut(s) 2477
AsuHPI GGTGA 7 cut(s) 2278, 2582, 2794, 3886, 4770, 4771, 4807
AsuII TTCGAA 1 cut(s) 331
AvaI CYCGRG 2 cut(s) 2176, 4886
AxyI CCTNAGG 1 cut(s) 4830
BaeGI GKGCMC 3 cut(s) 417, 3343, 5341
BalI TGGCCA 4 cut(s) 1263, 1946, 2273, 2810
BamHI GGATCC 5 cut(s) 251, 1311, 1851, 2755, 3976
BanII GRGCYC 7 cut(s) 2484, 2599, 2793, 3799, 3968, 4894, 4972
BarI GAAGNNNNNNTAC 2 cut(s) 2929, 2961
BbsI GAAGAC 5 cut(s) 24, 45, 68, 731, 957
Bbv12I GWGCWC 6 cut(s) 2484, 2793, 3799, 3968, 4887, 5341
BbvI GCAGC 7 cut(s) 2315, 2343, 2513, 2563, 4693, 4721, 4886
BceAI ACGGC 1 cut(s) 1669
BciT130I CCWGG 6 cut(s) 1640, 2415, 2721, 3903, 3988, 4793
BciVI GTATCC 2 cut(s) 837, 5078
BcnI CCSGG 1 cut(s) 2477
BcoDI GTCTC 9 cut(s) 476, 735, 1135, 1409, 1972, 2391, 3455, 4150, 4546
BcuI ACTAGT 1 cut(s) 1009
BfaI CTAG 9 cut(s) 71, 1010, 1844, 1961, 2621, 2876, 4529, 4545, 4872
BfmI CTRYAG 3 cut(s) 1390, 2671, 4038
BfoI RGCGCY 1 cut(s) 2520
BfrI CTTAAG 1 cut(s) 2777
BfuAI ACCTGC 2 cut(s) 5113, 5195
BfuI GTATCC 2 cut(s) 837, 5078
BglII AGATCT 1 cut(s) 3878
BisI GCNGC 7 cut(s) 2304, 2332, 2527, 2577, 4682, 4710, 4900
BlpI GCTNAGC 1 cut(s) 2772
BlsI GCNGC 7 cut(s) 2305, 2333, 2528, 2578, 4683, 4711, 4901
BmcAI AGTACT 1 cut(s) 4741
Bme1390I CCNGG 7 cut(s) 1640, 2415, 2477, 2721, 3903, 3988, 4793
BmeRI GACNNNNNGTC 1 cut(s) 5152
BmeT110I CYCGRG 2 cut(s) 2176, 4886
BmrFI CCNGG 7 cut(s) 1640, 2415, 2477, 2721, 3903, 3988, 4793
BmsI GCATC 4 cut(s) 363, 3121, 3303, 4067
BpiI GAAGAC 5 cut(s) 24, 45, 68, 731, 957
BplI GAGNNNNNCTC 4 cut(s) 3786, 3818, 3868, 3900
Bpu1102I GCTNAGC 1 cut(s) 2772
Bpu14I TTCGAA 1 cut(s) 331
BpuEI CTTGAG 5 cut(s) 653, 944, 2482, 2777, 3587
BpuMI CCSGG 1 cut(s) 2477
Bsa29I ATCGAT 2 cut(s) 1064, 3404
BsaAI YACGTR 1 cut(s) 4408
BsaHI GRCGYC 1 cut(s) 728
BsaI GGTCTC 3 cut(s) 476, 1409, 3455
BsaWI WCCGGW 3 cut(s) 2402, 3791, 4780
BsaXI ACNNNNNCTCC 2 cut(s) 5245, 5275
Bse118I RCCGGY 2 cut(s) 2681, 5096
Bse1I ACTGG 7 cut(s) 2054, 2857, 3676, 4435, 4737, 5122, 5369
Bse21I CCTNAGG 1 cut(s) 4830
Bse3DI GCAATG 7 cut(s) 754, 2096, 2514, 3027, 3593, 4499, 4658
BseAI TCCGGA 1 cut(s) 3791
BseBI CCWGG 6 cut(s) 1640, 2415, 2721, 3903, 3988, 4793
BseCI ATCGAT 2 cut(s) 1064, 3404
BseMI GCAATG 7 cut(s) 754, 2096, 2514, 3027, 3593, 4499, 4658
BseMII CTCAG 6 cut(s) 1198, 2707, 2763, 3899, 4821, 4838
BseNI ACTGG 7 cut(s) 2054, 2857, 3676, 4435, 4737, 5122, 5369
BseRI GAGGAG 2 cut(s) 1234, 2244
BseSI GKGCMC 3 cut(s) 417, 3343, 5341
BseXI GCAGC 7 cut(s) 2315, 2343, 2513, 2563, 4693, 4721, 4886
BsgI GTGCAG 1 cut(s) 5094
Bsh1236I CGCG 2 cut(s) 3917, 3919
Bsh1285I CGRYCG 1 cut(s) 1068
BshVI ATCGAT 2 cut(s) 1064, 3404
BsiEI CGRYCG 1 cut(s) 1068
BsiHKAI GWGCWC 6 cut(s) 2484, 2793, 3799, 3968, 4887, 5341
BsiHKCI CYCGRG 2 cut(s) 2176, 4886
BsiSI CCGG 7 cut(s) 2403, 2476, 2682, 3792, 4781, 4817, 5097
BsiWI CGTACG 1 cut(s) 3716
BslFI GGGAC 4 cut(s) 2382, 2444, 4749, 4822
BsmAI GTCTC 9 cut(s) 476, 735, 1135, 1409, 1972, 2391, 3455, 4150, 4546
BsmBI CGTCTC 3 cut(s) 735, 1135, 4546
BsmFI GGGAC 4 cut(s) 2382, 2444, 4749, 4822
BsmI GAATGC 2 cut(s) 1469, 3675
Bso31I GGTCTC 3 cut(s) 476, 1409, 3455
BsoBI CYCGRG 2 cut(s) 2176, 4886
Bsp119I TTCGAA 1 cut(s) 331
Bsp13I TCCGGA 1 cut(s) 3791
Bsp1407I TGTACA 2 cut(s) 1426, 2836
Bsp1720I GCTNAGC 1 cut(s) 2772
Bsp19I CCATGG 2 cut(s) 3346, 4714
BspCNI CTCAG 6 cut(s) 1197, 2706, 2764, 3898, 4822, 4837
BspDI ATCGAT 2 cut(s) 1064, 3404
BspEI TCCGGA 1 cut(s) 3791
BspFNI CGCG 2 cut(s) 3917, 3919
BspMI ACCTGC 2 cut(s) 5113, 5195
BspT104I TTCGAA 1 cut(s) 331
BspTI CTTAAG 1 cut(s) 2777
BspTNI GGTCTC 3 cut(s) 476, 1409, 3455
BsrDI GCAATG 7 cut(s) 754, 2096, 2514, 3027, 3593, 4499, 4658
BsrFI RCCGGY 2 cut(s) 2681, 5096
BsrGI TGTACA 2 cut(s) 1426, 2836
BsrI ACTGG 7 cut(s) 2054, 2857, 3676, 4435, 4737, 5122, 5369
BssAI RCCGGY 2 cut(s) 2681, 5096
BssNI GRCGYC 1 cut(s) 728
BssT1I CCWWGG 4 cut(s) 1078, 3346, 4203, 4714
Bst2UI CCWGG 6 cut(s) 1640, 2415, 2721, 3903, 3988, 4793
Bst6I CTCTTC 1 cut(s) 1886
BstACI GRCGYC 1 cut(s) 728
BstAFI CTTAAG 1 cut(s) 2777
BstAPI GCANNNNNTGC 1 cut(s) 1098
BstAUI TGTACA 2 cut(s) 1426, 2836
BstBAI YACGTR 1 cut(s) 4408
BstBI TTCGAA 1 cut(s) 331
BstC8I GCNNGC 7 cut(s) 1099, 1261, 2683, 2748, 3616, 3777, 4991
BstDSI CCRYGG 3 cut(s) 2336, 3346, 4714
BstEII GGTNACC 1 cut(s) 3892
BstFNI CGCG 2 cut(s) 3917, 3919
BstH2I RGCGCY 1 cut(s) 2520
BstHHI GCGC 5 cut(s) 2295, 2519, 3637, 3919, 4167
BstMAI GTCTC 9 cut(s) 476, 735, 1135, 1409, 1972, 2391, 3455, 4150, 4546
BstMCI CGRYCG 1 cut(s) 1068
BstNI CCWGG 6 cut(s) 1640, 2415, 2721, 3903, 3988, 4793
BstNSI RCATGY 6 cut(s) 1101, 1575, 3444, 3618, 4083, 5270
BstPI GGTNACC 1 cut(s) 3892
BstSCI CCNGG 7 cut(s) 1638, 2413, 2475, 2719, 3901, 3986, 4791
BstSFI CTRYAG 3 cut(s) 1390, 2671, 4038
BstSLI GKGCMC 3 cut(s) 417, 3343, 5341
BstSNI TACGTA 1 cut(s) 4408
BstUI CGCG 2 cut(s) 3917, 3919
BstV1I GCAGC 7 cut(s) 2315, 2343, 2513, 2563, 4693, 4721, 4886
BstV2I GAAGAC 5 cut(s) 24, 45, 68, 731, 957
BstX2I RGATCY 8 cut(s) 231, 251, 1311, 1851, 2755, 3878, 3976, 4000
BstXI CCANNNNNNTGG 2 cut(s) 715, 3987
BstYI RGATCY 8 cut(s) 231, 251, 1311, 1851, 2755, 3878, 3976, 4000
Bsu15I ATCGAT 2 cut(s) 1064, 3404
Bsu36I CCTNAGG 1 cut(s) 4830
BsuI GTATCC 2 cut(s) 837, 5078
BsuTUI ATCGAT 2 cut(s) 1064, 3404
BtgI CCRYGG 3 cut(s) 2336, 3346, 4714
BtgZI GCGATG 1 cut(s) 3031
BtsI GCAGTG 5 cut(s) 2433, 4811, 4887, 5082, 5339
BveI ACCTGC 2 cut(s) 5113, 5195
Cac8I GCNNGC 7 cut(s) 1099, 1261, 2683, 2748, 3616, 3777, 4991
CfoI GCGC 5 cut(s) 2295, 2519, 3637, 3919, 4167
Cfr10I RCCGGY 2 cut(s) 2681, 5096
ClaI ATCGAT 2 cut(s) 1064, 3404
Csp6I GTAC 8 cut(s) 173, 240, 1427, 2716, 2837, 3717, 4405, 4740
CviQI GTAC 8 cut(s) 173, 240, 1427, 2716, 2837, 3717, 4405, 4740
DraI TTTAAA 1 cut(s) 198
DriI GACNNNNNGTC 1 cut(s) 5152
EaeI YGGCCR 5 cut(s) 1261, 1944, 2271, 2808, 5142
Eam1104I CTCTTC 1 cut(s) 1886
Eam1105I GACNNNNNGTC 1 cut(s) 5152
EarI CTCTTC 1 cut(s) 1886
EciI GGCGGA 1 cut(s) 2700
Ecl136II GAGCTC 4 cut(s) 2482, 2791, 3797, 3966
Eco105I TACGTA 1 cut(s) 4408
Eco130I CCWWGG 4 cut(s) 1078, 3346, 4203, 4714
Eco24I GRGCYC 7 cut(s) 2484, 2599, 2793, 3799, 3968, 4894, 4972
Eco31I GGTCTC 3 cut(s) 476, 1409, 3455
Eco32I GATATC 2 cut(s) 2070, 4473
Eco53kI GAGCTC 4 cut(s) 2482, 2791, 3797, 3966
Eco57I CTGAAG 2 cut(s) 3688, 4266
Eco81I CCTNAGG 1 cut(s) 4830
Eco88I CYCGRG 2 cut(s) 2176, 4886
Eco91I GGTNACC 1 cut(s) 3892
EcoICRI GAGCTC 4 cut(s) 2482, 2791, 3797, 3966
EcoO109I RGGNCCY 1 cut(s) 4747
EcoO65I GGTNACC 1 cut(s) 3892
EcoRI GAATTC 4 cut(s) 502, 2408, 3215, 4786
EcoRII CCWGG 6 cut(s) 1638, 2413, 2719, 3901, 3986, 4791
EcoRV GATATC 2 cut(s) 2070, 4473
EcoT14I CCWWGG 4 cut(s) 1078, 3346, 4203, 4714
EcoT22I ATGCAT 3 cut(s) 1469, 3318, 3620
EcoT38I GRGCYC 7 cut(s) 2484, 2599, 2793, 3799, 3968, 4894, 4972
ErhI CCWWGG 4 cut(s) 1078, 3346, 4203, 4714
Esp3I CGTCTC 3 cut(s) 735, 1135, 4546
FaqI GGGAC 4 cut(s) 2382, 2444, 4749, 4822
FauI CCCGC 5 cut(s) 2558, 2584, 2717, 4957, 4982
FauNDI CATATG 3 cut(s) 702, 2920, 3481
Fnu4HI GCNGC 7 cut(s) 2304, 2332, 2527, 2577, 4682, 4710, 4900
FriOI GRGCYC 7 cut(s) 2484, 2599, 2793, 3799, 3968, 4894, 4972
Fsp4HI GCNGC 7 cut(s) 2304, 2332, 2527, 2577, 4682, 4710, 4900
FspBI CTAG 9 cut(s) 71, 1010, 1844, 1961, 2621, 2876, 4529, 4545, 4872
FspI TGCGCA 1 cut(s) 2294
GlaI GCGC 5 cut(s) 2294, 2518, 3636, 3918, 4166
GluI GCNGC 7 cut(s) 2304, 2332, 2527, 2577, 4682, 4710, 4900
HaeII RGCGCY 1 cut(s) 2520
HapII CCGG 7 cut(s) 2403, 2476, 2682, 3792, 4781, 4817, 5097
HhaI GCGC 5 cut(s) 2295, 2519, 3637, 3919, 4167
Hin1I GRCGYC 1 cut(s) 728
Hin6I GCGC 5 cut(s) 2293, 2517, 3635, 3917, 4165
HinP1I GCGC 5 cut(s) 2293, 2517, 3635, 3917, 4165
HincII GTYRAC 2 cut(s) 2902, 4029
HindII GTYRAC 2 cut(s) 2902, 4029
HindIII AAGCTT 4 cut(s) 1274, 2641, 2763, 5014
HpaI GTTAAC 1 cut(s) 2902
HpaII CCGG 7 cut(s) 2403, 2476, 2682, 3792, 4781, 4817, 5097
HphI GGTGA 7 cut(s) 2278, 2582, 2794, 3886, 4770, 4771, 4807
HpyCH4IV ACGT 6 cut(s) 307, 728, 1128, 2133, 4407, 4539
HpySE526I ACGT 6 cut(s) 307, 728, 1128, 2133, 4407, 4539
Hsp92I GRCGYC 1 cut(s) 728
HspAI GCGC 5 cut(s) 2293, 2517, 3635, 3917, 4165
Kpn2I TCCGGA 1 cut(s) 3791
KroI GCCGGC 1 cut(s) 2681
KroNI GCCGGC 1 cut(s) 2683
KspAI GTTAAC 1 cut(s) 2902
Lsp1109I GCAGC 7 cut(s) 2315, 2343, 2513, 2563, 4693, 4721, 4886
LweI GCATC 4 cut(s) 363, 3121, 3303, 4067
MaeI CTAG 9 cut(s) 71, 1010, 1844, 1961, 2621, 2876, 4529, 4545, 4872
MaeII ACGT 6 cut(s) 307, 728, 1128, 2133, 4407, 4539
MaeIII GTNAC 9 cut(s) 944, 1574, 2848, 3436, 3809, 3892, 5113, 5305, 5371
MfeI CAATTG 4 cut(s) 1495, 3005, 4331, 4341
MflI RGATCY 8 cut(s) 231, 251, 1311, 1851, 2755, 3878, 3976, 4000
MlsI TGGCCA 4 cut(s) 1263, 1946, 2273, 2810
MluNI TGGCCA 4 cut(s) 1263, 1946, 2273, 2810
MlyI GAGTC 8 cut(s) 2086, 2393, 2568, 3795, 4489, 4771, 4814, 4941
MmeI TCCRAC 3 cut(s) 287, 732, 1339
Mox20I TGGCCA 4 cut(s) 1263, 1946, 2273, 2810
Mph1103I ATGCAT 3 cut(s) 1469, 3318, 3620
MroI TCCGGA 1 cut(s) 3791
MroNI GCCGGC 1 cut(s) 2681
MroXI GAANNNNTTC 3 cut(s) 2490, 2941, 3203
MscI TGGCCA 4 cut(s) 1263, 1946, 2273, 2810
MslI CAYNNNNRTG 1 cut(s) 1342
Msp20I TGGCCA 4 cut(s) 1263, 1946, 2273, 2810
MspA1I CMGCKG 1 cut(s) 157
MspCI CTTAAG 1 cut(s) 2777
MspI CCGG 7 cut(s) 2403, 2476, 2682, 3792, 4781, 4817, 5097
MspR9I CCNGG 7 cut(s) 1640, 2415, 2477, 2721, 3903, 3988, 4793
MunI CAATTG 4 cut(s) 1495, 3005, 4331, 4341
Mva1269I GAATGC 2 cut(s) 1469, 3675
MvaI CCWGG 6 cut(s) 1640, 2415, 2721, 3903, 3988, 4793
MvnI CGCG 2 cut(s) 3917, 3919
NaeI GCCGGC 1 cut(s) 2683
NciI CCSGG 1 cut(s) 2477
NcoI CCATGG 2 cut(s) 3346, 4714
NdeI CATATG 3 cut(s) 702, 2920, 3481
NgoMIV GCCGGC 1 cut(s) 2681
NmeAIII GCCGAG 1 cut(s) 4559
NmuCI GTSAC 1 cut(s) 3892
NsbI TGCGCA 1 cut(s) 2294
NsiI ATGCAT 3 cut(s) 1469, 3318, 3620
NspI RCATGY 6 cut(s) 1101, 1575, 3444, 3618, 4083, 5270
NspV TTCGAA 1 cut(s) 331
PaeI GCATGC 2 cut(s) 1101, 3618
PaeR7I CTCGAG 1 cut(s) 2176
PciI ACATGT 2 cut(s) 1571, 3440
PcsI WCGNNNNNNNCGW 1 cut(s) 3805
PctI GAATGC 2 cut(s) 1469, 3675
PdiI GCCGGC 1 cut(s) 2683
PdmI GAANNNNTTC 3 cut(s) 2490, 2941, 3203
Pfl23II CGTACG 1 cut(s) 3716
PflFI GACNNNGTC 1 cut(s) 4732
PflMI CCANNNNNTGG 4 cut(s) 2378, 2662, 4720, 4743
PkrI GCNGC 7 cut(s) 2305, 2333, 2528, 2578, 4683, 4711, 4901
Ple19I CGATCG 1 cut(s) 1068
PleI GAGTC 8 cut(s) 2086, 2392, 2567, 3795, 4489, 4770, 4814, 4940
PpsI GAGTC 8 cut(s) 2086, 2392, 2567, 3795, 4489, 4770, 4814, 4940
Ppu21I YACGTR 1 cut(s) 4408
PpuMI RGGWCCY 1 cut(s) 4747
PscI ACATGT 2 cut(s) 1571, 3440
PshBI ATTAAT 1 cut(s) 3057
PsiI TTATAA 3 cut(s) 800, 3503, 3740
Psp124BI GAGCTC 4 cut(s) 2484, 2793, 3799, 3968
Psp5II RGGWCCY 1 cut(s) 4747
Psp6I CCWGG 6 cut(s) 1638, 2413, 2719, 3901, 3986, 4791
PspEI GGTNACC 1 cut(s) 3892
PspGI CCWGG 6 cut(s) 1638, 2413, 2719, 3901, 3986, 4791
PspLI CGTACG 1 cut(s) 3716
PspPPI RGGWCCY 1 cut(s) 4747
PspXI VCTCGAGB 1 cut(s) 2176
PsrI GAACNNNNNNTAC 2 cut(s) 4388, 4420
PsuI RGATCY 8 cut(s) 231, 251, 1311, 1851, 2755, 3878, 3976, 4000
PsyI GACNNNGTC 1 cut(s) 4732
PvuI CGATCG 1 cut(s) 1068
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 8 cut(s) 174, 241, 1428, 2717, 2838, 3718, 4406, 4741
RsaNI GTAC 8 cut(s) 173, 240, 1427, 2716, 2837, 3717, 4405, 4740
RseI CAYNNNNRTG 1 cut(s) 1342
SacI GAGCTC 4 cut(s) 2484, 2793, 3799, 3968
SatI GCNGC 7 cut(s) 2304, 2332, 2527, 2577, 4682, 4710, 4900
ScaI AGTACT 1 cut(s) 4741
SchI GAGTC 8 cut(s) 2086, 2393, 2568, 3795, 4489, 4771, 4814, 4941
ScrFI CCNGG 7 cut(s) 1640, 2415, 2477, 2721, 3903, 3988, 4793
SfaNI GCATC 4 cut(s) 363, 3121, 3303, 4067
SfcI CTRYAG 3 cut(s) 1390, 2671, 4038
Sfr274I CTCGAG 1 cut(s) 2176
SfuI TTCGAA 1 cut(s) 331
SlaI CTCGAG 1 cut(s) 2176
SmiMI CAYNNNNRTG 1 cut(s) 1342
SmlI CTYRAG 7 cut(s) 668, 959, 2176, 2497, 2777, 2792, 3602
SmoI CTYRAG 7 cut(s) 668, 959, 2176, 2497, 2777, 2792, 3602
SnaBI TACGTA 1 cut(s) 4408
SpeI ACTAGT 1 cut(s) 1009
SphI GCATGC 2 cut(s) 1101, 3618
SspI AATATT 6 cut(s) 292, 805, 2604, 3041, 3297, 5313
SspMI CTAG 9 cut(s) 71, 1010, 1844, 1961, 2621, 2876, 4529, 4545, 4872
SstI GAGCTC 4 cut(s) 2484, 2793, 3799, 3968
StyD4I CCNGG 7 cut(s) 1638, 2413, 2475, 2719, 3901, 3986, 4791
StyI CCWWGG 4 cut(s) 1078, 3346, 4203, 4714
TaiI ACGT 6 cut(s) 310, 731, 1131, 2136, 4410, 4542
TaqI TCGA 9 cut(s) 331, 371, 1064, 2177, 2484, 3210, 3404, 3650, 3799
TatI WGTACW 4 cut(s) 172, 1426, 2836, 4739
TseFI GTSAC 1 cut(s) 3892
TseI GCWGC 7 cut(s) 2303, 2331, 2526, 2576, 4681, 4709, 4899
Tsp45I GTSAC 1 cut(s) 3892
TspGWI ACGGA 5 cut(s) 380, 2571, 3146, 3405, 4944
Tth111I GACNNNGTC 1 cut(s) 4732
Van91I CCANNNNNTGG 4 cut(s) 2378, 2662, 4720, 4743
Vha464I CTTAAG 1 cut(s) 2777
VneI GTGCAC 1 cut(s) 5337
VspI ATTAAT 1 cut(s) 3057
XbaI TCTAGA 1 cut(s) 4871
XceI RCATGY 6 cut(s) 1101, 1575, 3444, 3618, 4083, 5270
XhoI CTCGAG 1 cut(s) 2176
XmnI GAANNNNTTC 3 cut(s) 2490, 2941, 3203
XspI CTAG 9 cut(s) 71, 1010, 1844, 1961, 2621, 2876, 4529, 4545, 4872
ZraI GACGTC 1 cut(s) 729
ZrmI AGTACT 1 cut(s) 4741
Zsp2I ATGCAT 3 cut(s) 1469, 3318, 3620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.