Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10816360 .. 10818240

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAAAATAAACAGCCAAAATTAGGGTCTGATGGATCGATCATGAAGACAAGTCAAAGAAAGGACATATATGTAATTGATATATGTGGTGAACTCACACAAGTTTTCAATTACTACTTGCTTAAATTTTTCAGGAGTTATTACAGATGCACTACACAAAAATGCATTGTAAAGAAGCGTGTCGAGAGATCATTCCAAGATCCATCAATCGTGATCACAACATATGAAGGTCAGCACAACCACCAGTGTCCAGCAACACTTCGTGGTAATCTCAATCTCAACGCTGTCGGAATGCTGTCACCTAATTCGCTGTTGGCAGCGGCACCTTTGAACGGATCAGCAAGATATTCACATGAATTCTTAGCTCAATTTCTCCCAGTGAACAACCAGGTGGAATTGCCAAATCATTACCATGATCATCCACCAAGTTCAATGTTATACTCAAACCTCATGAATCCTCATCGTCATCACCATCATCAGCAGCCGCAGCAACAGCTGCATGCTCCTGACTATGGTTTGTTGCAAGATTTAGTTCACTCGTTTAGTCACAAGCAAGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010453 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042659 GO:0043565 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

188

Amino Acids

21.56

Weight (kDa)

9.03

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	322
AciI	CCGC	2 cut(s)	320, 485
AclWI	GGATC	3 cut(s)	43, 194, 343
AcsI	RAATTY	2 cut(s)	125, 356
AdeI	CACNNNGTG	1 cut(s)	263
AfiI	CCNNNNNNNGG	3 cut(s)	23, 332, 512
AgsI	TTSAA	3 cut(s)	109, 331, 432
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	2 cut(s)	365, 496
AluI	AGCT	2 cut(s)	365, 496
AlwI	GGATC	3 cut(s)	43, 194, 343
ApeKI	GCWGC	4 cut(s)	317, 481, 487, 496
ApoI	RAATTY	2 cut(s)	125, 356
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AsuHPI	GGTGA	3 cut(s)	101, 291, 461
BanI	GGYRCC	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	4 cut(s)	329, 483, 493, 499
BccI	CCATC	3 cut(s)	26, 211, 480
BciT130I	CCWGG	1 cut(s)	389
BclI	TGATCA	2 cut(s)	213, 415
BisI	GCNGC	6 cut(s)	318, 321, 482, 485, 488, 497
BlsI	GCNGC	6 cut(s)	319, 322, 483, 486, 489, 498
Bme1390I	CCNGG	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	137
BmuI	ACTGGG	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 332, 512
Bse1I	ACTGG	2 cut(s)	244, 377
BseBI	CCWGG	1 cut(s)	389
BseCI	ATCGAT	1 cut(s)	38
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	3 cut(s)	23, 332, 512
BseNI	ACTGG	2 cut(s)	244, 377
BseXI	GCAGC	4 cut(s)	329, 483, 493, 499
BshNI	GGYRCC	1 cut(s)	322
BshVI	ATCGAT	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	23, 332, 512
BsmI	GAATGC	1 cut(s)	297
Bsp143I	GATC	7 cut(s)	35, 39, 188, 199, 213, 335, 415
BspACI	CCGC	2 cut(s)	320, 485
BspDI	ATCGAT	1 cut(s)	38
BspHI	TCATGA	2 cut(s)	42, 450
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	3 cut(s)	43, 194, 343
BspT107I	GGYRCC	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	244, 377
BssMI	GATC	7 cut(s)	35, 39, 188, 199, 213, 335, 415
Bst2UI	CCWGG	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	7 cut(s)	38, 42, 191, 202, 216, 338, 418
BstMBI	GATC	7 cut(s)	35, 39, 188, 199, 213, 335, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	487, 493, 496
BstNI	CCWGG	1 cut(s)	389
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	387
BstV1I	GCAGC	4 cut(s)	329, 483, 493, 499
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	38
BsuTUI	ATCGAT	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	251, 384
Cac8I	GCNNGC	1 cut(s)	501
CciI	TCATGA	2 cut(s)	42, 450
ClaI	ATCGAT	1 cut(s)	38
CsiI	ACCWGGT	1 cut(s)	387
CviAII	CATG	6 cut(s)	43, 353, 413, 451, 500, 561
CviJI	RGCY	5 cut(s)	16, 365, 484, 496, 559
CviKI_1	RGCY	5 cut(s)	16, 365, 484, 496, 559
DdeI	CTNAG	1 cut(s)	361
DpnI	GATC	7 cut(s)	37, 41, 190, 201, 215, 337, 417
DpnII	GATC	7 cut(s)	35, 39, 188, 199, 213, 335, 415
DraIII	CACNNNGTG	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	167
FaeI	CATG	6 cut(s)	46, 356, 416, 454, 503, 564
FatI	CATG	6 cut(s)	42, 352, 412, 450, 499, 560
FauNDI	CATATG	1 cut(s)	223
FbaI	TGATCA	2 cut(s)	213, 415
Fnu4HI	GCNGC	6 cut(s)	318, 321, 482, 485, 488, 497
FokI	GGATG	1 cut(s)	405
Fsp4HI	GCNGC	6 cut(s)	318, 321, 482, 485, 488, 497
GluI	GCNGC	6 cut(s)	318, 321, 482, 485, 488, 497
Hin1II	CATG	6 cut(s)	46, 356, 416, 454, 503, 564
HinfI	GANTC	1 cut(s)	454
HphI	GGTGA	3 cut(s)	101, 291, 461
Hpy166II	GTNNAC	3 cut(s)	92, 382, 535
Hpy188I	TCNGA	2 cut(s)	31, 290
Hpy188III	TCNNGA	6 cut(s)	43, 133, 184, 211, 451, 506
Hpy8I	GTNNAC	3 cut(s)	92, 382, 535
HpyAV	CCTTC	1 cut(s)	221
HpyCH4V	TGCA	4 cut(s)	150, 165, 499, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	487, 493, 496
HpyF3I	CTNAG	1 cut(s)	361
Hsp92II	CATG	6 cut(s)	46, 356, 416, 454, 503, 564
Ksp22I	TGATCA	2 cut(s)	213, 415
Kzo9I	GATC	7 cut(s)	35, 39, 188, 199, 213, 335, 415
LmnI	GCTCC	1 cut(s)	508
LpnPI	CCDG	7 cut(s)	118, 257, 264, 374, 390, 401, 519
Lsp1109I	GCAGC	4 cut(s)	329, 483, 493, 499
LweI	GCATC	1 cut(s)	137
MabI	ACCWGGT	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	297, 545
MalI	GATC	7 cut(s)	37, 41, 190, 201, 215, 337, 417
MboI	GATC	7 cut(s)	35, 39, 188, 199, 213, 335, 415
MboII	GAAGA	1 cut(s)	58
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	8 cut(s)	20, 75, 109, 125, 304, 356, 368, 395
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	2 cut(s)	458, 468
Mph1103I	ATGCAT	1 cut(s)	167
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	2 cut(s)	160, 411
MspA1I	CMGCKG	2 cut(s)	320, 496
MspR9I	CCNGG	1 cut(s)	389
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	3 cut(s)	487, 493, 496
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	7 cut(s)	35, 39, 188, 199, 213, 335, 415
NlaIII	CATG	6 cut(s)	46, 356, 416, 454, 503, 564
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	2 cut(s)	297, 545
NsiI	ATGCAT	1 cut(s)	167
NspI	RCATGY	1 cut(s)	503
PaeI	GCATGC	1 cut(s)	503
PagI	TCATGA	2 cut(s)	42, 450
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	6 cut(s)	319, 322, 483, 486, 489, 498
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	496
RseI	CAYNNNNRTG	2 cut(s)	160, 411
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	6 cut(s)	318, 321, 482, 485, 488, 497
Sau3AI	GATC	7 cut(s)	35, 39, 188, 199, 213, 335, 415
ScrFI	CCNGG	1 cut(s)	389
SetI	ASST	7 cut(s)	232, 304, 328, 367, 393, 450, 498
SexAI	ACCWGGT	1 cut(s)	387
SfaNI	GCATC	1 cut(s)	137
SmiMI	CAYNNNNRTG	2 cut(s)	160, 411
SphI	GCATGC	1 cut(s)	503
Sse9I	AATT	8 cut(s)	20, 75, 109, 125, 304, 356, 368, 395
SsiI	CCGC	2 cut(s)	320, 485
StyD4I	CCNGG	1 cut(s)	387
TaqI	TCGA	2 cut(s)	38, 183
TasI	AATT	8 cut(s)	20, 75, 109, 125, 304, 356, 368, 395
TauI	GCSGC	2 cut(s)	323, 487
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	251, 384
TseFI	GTSAC	2 cut(s)	297, 545
TseI	GCWGC	4 cut(s)	317, 481, 487, 496
Tsp45I	GTSAC	2 cut(s)	297, 545
TspDTI	ATGAA	5 cut(s)	17, 59, 240, 369, 467
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	2 cut(s)	251, 384
XapI	RAATTY	2 cut(s)	125, 356
XceI	RCATGY	1 cut(s)	503
Zsp2I	ATGCAT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.