pycom17g13420

General transcription factor 3C polypeptide

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
N/A
Physical Location & Seq
Forward (+)
11048837 .. 11049142
306 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 306 bp
ATGCCTCTGGCAATGATAATTAAAGCAGGAATATGCCATGCTTACCTTGGAAATATGGAGAAGGCAGAAGGTATTTTTAGCGCTCTTGTTGAGAAGAGTGTAGCTAATGCTGACTTGATTGCTAAAGTTGCAAAGTCATATATGAGTCTTGGGCATCATAGTTCTGCGTTGAAGTATTATTTGATGTTGAAAGGAAATGTTGAATTTAATAATGGCTTTATAATTATGAAAATCGCTCAATGTCATTTGTCCTTGAATGACAGTACAGGCGATTTTGTGCTTCTACAAAGCTTTGAAGACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.04

Weight (kDa)

6.39

Isoelectric Point (pI)

29.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 1 cut(s) 265
AfeI AGCGCT 1 cut(s) 82
AgsI TTSAA 5 cut(s) 172, 190, 203, 256, 296
AluBI AGCT 2 cut(s) 104, 291
AluI AGCT 2 cut(s) 104, 291
Aor51HI AGCGCT 1 cut(s) 82
ApoI RAATTY 1 cut(s) 203
AspLEI GCGC 1 cut(s) 83
BfoI RGCGCY 1 cut(s) 84
BmsI GCATC 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 128
CfoI GCGC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 264
CviAII CATG 1 cut(s) 38
CviJI RGCY 3 cut(s) 104, 216, 291
CviKI_1 RGCY 3 cut(s) 104, 216, 291
CviQI GTAC 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 46
Eco47III AGCGCT 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 1 cut(s) 41
FaiI YATR 9 cut(s) 34, 39, 56, 139, 141, 143, 159, 221, 227
FatI CATG 1 cut(s) 37
GlaI GCGC 1 cut(s) 82
HaeII RGCGCY 1 cut(s) 84
HhaI GCGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 41
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 289
HinfI GANTC 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 55, 62
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
Hsp92II CATG 1 cut(s) 41
HspAI GCGC 1 cut(s) 81
LpnPI CCDG 2 cut(s) 12, 252
LweI GCATC 1 cut(s) 163
MboII GAAGA 1 cut(s) 106
MluCI AATT 3 cut(s) 18, 203, 222
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 1 cut(s) 15
MseI TTAA 2 cut(s) 21, 207
MwoI GCNNNNNNNGC 1 cut(s) 128
NlaIII CATG 1 cut(s) 41
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PsiI TTATAA 1 cut(s) 221
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SaqAI TTAA 2 cut(s) 21, 207
SchI GAGTC 1 cut(s) 154
SetI ASST 4 cut(s) 48, 73, 106, 293
SfaNI GCATC 1 cut(s) 163
SgeI CNNG 9 cut(s) 20, 39, 50, 59, 98, 127, 161, 265, 279
Sse9I AATT 3 cut(s) 18, 203, 222
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 263
TasI AATT 3 cut(s) 18, 203, 222
TatI WGTACW 1 cut(s) 263
Tru1I TTAA 2 cut(s) 21, 207
Tru9I TTAA 2 cut(s) 21, 207
TspDTI ATGAA 1 cut(s) 242
XapI RAATTY 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.